Rroxscaffold_5G00364470

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013202
Physical Location & Seq
Forward (+)
45686491 .. 45688881
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364470.1

Sequence Viewer

Length: 1686 bp
ATGGCGGGTGCGCGTGTTTGCGCCACCTTCCCCAATCTCGCACACCCAATCTTACCCGCCACTATCCCGCCCAAAATTCCGGTATCAGCCTCCGTTTCCGTACCGTCAAAAATCACTCGCCGGAAGAACTATTTGCGCCCCAAAATTCTCAAAACCCTAAACCCTAAACCCTACCCGCAACCCGTAGTTCCCGTCGAATCTCCAGTAACCCCATCCCAAGACAACCATGAGCTCGAGTATAGCTCCGACCGAGGCGACGTCGTTTTGGGAGGAGGAGGAGGAGGAGCTGAAGTCGAAGAATTAAGAGTGTCTGAGACGACGACGGCGGAGCTCAGTGGCATTTCTGGTAAATTTTCTGCGAGGACTGTGCTAAAATATGGGGGTTATTTTATTGGGCTTTTTGTGCTACAGACTGTTGTTTCTGTTTTGTTATTGGGAGACAGTGATCCTGATGAAAGTAGGAAGTCTAGGAGTTCAGTATTAGGCAAATCCAATTTGAAGGCGAGTTCTGGGTCTGAATTGGGCAATGTGGTTCCGTTTGATGAGTCCCGATTGGGAGAGAAAATTGAAGAGATTAGGGCAATGGCAAGGAAAGCGCGAAAGATTGAGAAGAATGAGTCCAAGGGAAGTATTGGAAATGAGGATGATGCATTTTCGAAGTCTAAGAATAAGATTGGGATTGAAAAGGAGGTTGGGAATCGGTTGGTTAACTTGCAGAAGAAGTTGGGTTCCAAAAGGGAGAAGTTGCGGTTTGAAGATGGGGTGAGGAAGAATAATGAGAATGTGAAGGAGGGGGATGGGGCGTTGATGTTTAAGAAGAAGCTGAAGTTTAAGACTCCTACTGCTGAGGTGAATAGGAATCCGAAGGGTTTTGGAGGTGTCAAAGAGGAAGGTGGTTCTAGTAAGAGTAAGAGAGGTTCAGGTGGTGTAGATGAAATTGGGAGAAATGCAAGTGTTGGTACTGATGGTATGGAATTGCTAGAAGCTGATGATAAGGAGAAGCCGCAAGAGACTTTGCAGAAAGGAACAGGGAGATTAGATGATAGACAGGAAAGAGAAGCTGGAAATATGGAACCGCAGAATGGTACTGTCCACAGGACTATACAGGGGAGGTCATCTGCTGAAGATGTAGAGTCAATCAAACCAAGAGGCTTCGGGAAGAAAAACCCTGAAAGCTTGAAGAAAGAAATTCAGGGAAGGACAGTAGAATCAGATGGTCCTACTGTGCAGAGTGTGAATAGCGGTTCAACACAGAAAAAAGCCCAAAAACAAGCACTGGCTAACAAAGTCAGTAGCAAGCAATCAGACAATGAGACTGATCCATGGTGGTTGCATCTTCCTTATGTTCTAGTTATTTTTATGCGTAGAGGTTCTGATGGGCAAGGAGGGCTTTTTAGCATAGAGCTCAATTCTCAGTCCCAAAACGAGAGTGATGCTTCCTATACTGTTGCTTTTGAGGACCGTGGTGATGCCAATAACTTCTGTTTCCTATTGGAGTCTTGTTTTGAAGATCAAGATGATTTCAGGGCCACTGCTGCTCCCTTACCAAATAAAGAACTTCATAAAGCAGTAAAATCAGATGACATGAAGGTAATTGTTGTGAAGAAGGGGCAGCTTCAGCTGTATGCTGGGCAACCTTTTGCTGAAGTTGAAATGGCTTTGCGCTCTTTAGTTTTACAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3110

Protein Analysis

561

Amino Acids

61.16

Weight (kDa)

8.99

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3110 PF11360 460 - 539 4.7e-06 Protein of unknown function (DUF3110)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15820
fragaria_vesca FvH4_4g18220
malus_domestica MD13G1168100.v1.1
prunus_persica Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1
pyrus_communis pycom13g14390
rosa_chinensis RchiOBHm_Chr4g0422351
rosa_laevigata RLG00000007617
rosa_multiflora Rmu_sc0013245.1_g000011
rosa_roxburghii Rroxscaffold_5G00364460 Rroxscaffold_5G00364470
rosa_rugosa Rorug04G0179300
rosa_samantha Rh4AG238700 Rh4BG242300 Rh4CG253800 Rh4DG237700
rosa_wichuraiana Rw4G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
AccII CGCG 2 cut(s) 13, 598
AciI CCGC 9 cut(s) 5, 57, 68, 176, 326, 748, 1004, 1076, 1242
AclWI GGATC 2 cut(s) 440, 1313
AcsI RAATTY 4 cut(s) 75, 144, 350, 1188
AcuI CTGAAG 5 cut(s) 309, 845, 1143, 1601, 1665
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 3 cut(s) 102, 961, 1087
AfiI CCNNNNNNNGG 1 cut(s) 1082
AgsI TTSAA 8 cut(s) 499, 569, 683, 755, 1180, 1248, 1508, 1652
AjuI GAANNNNNNNTTGG 2 cut(s) 675, 707
Alw21I GWGCWC 3 cut(s) 234, 333, 1407
Alw26I GTCTC 4 cut(s) 308, 432, 1004, 1307
AlwI GGATC 2 cut(s) 440, 1313
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 1 cut(s) 1527
ApeKI GCWGC 2 cut(s) 1535, 1612
ApoI RAATTY 4 cut(s) 75, 144, 350, 1188
AspLEI GCGC 5 cut(s) 13, 23, 138, 598, 1665
AspS9I GGNCC 3 cut(s) 1217, 1459, 1527
AsuHPI GGTGA 3 cut(s) 775, 862, 1478
AsuII TTCGAA 1 cut(s) 656
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 2 cut(s) 1217, 1459
BanII GRGCYC 3 cut(s) 234, 333, 1407
Bbv12I GWGCWC 3 cut(s) 234, 333, 1407
BbvCI CCTCAGC 1 cut(s) 846
BbvI GCAGC 2 cut(s) 1522, 1624
BccI CCATC 6 cut(s) 220, 752, 791, 959, 1208, 1370
BceAI ACGGC 1 cut(s) 339
BcgI CGANNNNNNTGC 4 cut(s) 349, 383, 1415, 1449
BcoDI GTCTC 4 cut(s) 308, 432, 1004, 1307
BfaI CTAG 4 cut(s) 468, 900, 980, 1349
BfmI CTRYAG 1 cut(s) 407
BisI GCNGC 3 cut(s) 1004, 1536, 1613
BlsI GCNGC 3 cut(s) 1005, 1537, 1614
Bme18I GGWCC 2 cut(s) 1217, 1459
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 3 cut(s) 1217, 1459, 1527
BmiI GGNNCC 3 cut(s) 534, 730, 1074
BmsI GCATC 4 cut(s) 637, 1342, 1423, 1459
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpmI CTGGAG 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 846
Bpu14I TTCGAA 1 cut(s) 656
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 4 cut(s) 250, 621, 1322, 1462
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 4 cut(s) 276, 306, 1522, 1552
Bsc4I CCNNNNNNNGG 1 cut(s) 1082
Bse1I ACTGG 2 cut(s) 203, 1281
Bse3DI GCAATG 2 cut(s) 532, 588
BseDI CCNNGG 4 cut(s) 250, 621, 1322, 1462
BseGI GGATG 3 cut(s) 212, 649, 802
BseLI CCNNNNNNNGG 1 cut(s) 1082
BseMI GCAATG 2 cut(s) 532, 588
BseMII CTCAG 4 cut(s) 303, 346, 837, 1427
BseNI ACTGG 2 cut(s) 203, 1281
BseRI GAGGAG 5 cut(s) 285, 288, 291, 294, 297
BseXI GCAGC 2 cut(s) 1522, 1624
BseYI CCCAGC 1 cut(s) 1628
BsgI GTGCAG 1 cut(s) 1247
Bsh1236I CGCG 2 cut(s) 13, 598
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 1 cut(s) 1529
BsiEI CGRYCG 1 cut(s) 250
BsiHKAI GWGCWC 3 cut(s) 234, 333, 1407
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 2 cut(s) 80, 121
BslFI GGGAC 2 cut(s) 532, 1402
BslI CCNNNNNNNGG 1 cut(s) 1082
BsmAI GTCTC 4 cut(s) 308, 432, 1004, 1307
BsmBI CGTCTC 1 cut(s) 308
BsmFI GGGAC 2 cut(s) 532, 1402
BsnI GGCC 1 cut(s) 1529
BsoBI CYCGRG 1 cut(s) 233
Bsp119I TTCGAA 1 cut(s) 656
Bsp1286I GDGCHC 3 cut(s) 234, 333, 1407
Bsp143I GATC 3 cut(s) 445, 1318, 1510
Bsp19I CCATGG 1 cut(s) 1322
BspACI CCGC 9 cut(s) 5, 57, 68, 176, 326, 748, 1004, 1076, 1242
BspANI GGCC 1 cut(s) 1529
BspCNI CTCAG 4 cut(s) 304, 345, 838, 1426
BspFNI CGCG 2 cut(s) 13, 598
BspLI GGNNCC 3 cut(s) 534, 730, 1074
BspPI GGATC 2 cut(s) 440, 1313
BspT104I TTCGAA 1 cut(s) 656
BsrDI GCAATG 2 cut(s) 532, 588
BsrI ACTGG 2 cut(s) 203, 1281
BssECI CCNNGG 4 cut(s) 250, 621, 1322, 1462
BssMI GATC 3 cut(s) 445, 1318, 1510
BssNI GRCGYC 1 cut(s) 258
BssT1I CCWWGG 2 cut(s) 621, 1322
Bst4CI ACNGT 9 cut(s) 105, 367, 415, 443, 1090, 1204, 1225, 1447, 1463
Bst6I CTCTTC 1 cut(s) 564
BstACI GRCGYC 1 cut(s) 258
BstBI TTCGAA 1 cut(s) 656
BstC8I GCNNGC 1 cut(s) 1298
BstDEI CTNAG 5 cut(s) 312, 332, 663, 846, 1413
BstDSI CCRYGG 2 cut(s) 1322, 1462
BstF5I GGATG 3 cut(s) 212, 649, 802
BstFNI CGCG 2 cut(s) 13, 598
BstHHI GCGC 5 cut(s) 13, 23, 138, 598, 1665
BstKTI GATC 3 cut(s) 448, 1321, 1513
BstMAI GTCTC 4 cut(s) 308, 432, 1004, 1307
BstMBI GATC 3 cut(s) 445, 1318, 1510
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 5 cut(s) 403, 593, 1387, 1535, 1618
BstSFI CTRYAG 1 cut(s) 407
BstUI CGCG 2 cut(s) 13, 598
BstV1I GCAGC 2 cut(s) 1522, 1624
BsuRI GGCC 1 cut(s) 1529
BtgI CCRYGG 2 cut(s) 1322, 1462
BtsCI GGATG 3 cut(s) 212, 649, 802
BtsI GCAGTG 1 cut(s) 1530
BtsIMutI CAGTG 4 cut(s) 340, 448, 1274, 1530
Cac8I GCNNGC 1 cut(s) 1298
CfoI GCGC 5 cut(s) 13, 23, 138, 598, 1665
Cfr13I GGNCC 3 cut(s) 1217, 1459, 1527
Csp6I GTAC 3 cut(s) 101, 960, 1086
CviAII CATG 3 cut(s) 227, 1323, 1585
CviQI GTAC 3 cut(s) 101, 960, 1086
DdeI CTNAG 5 cut(s) 312, 332, 663, 846, 1413
DpnI GATC 3 cut(s) 447, 1320, 1512
DpnII GATC 3 cut(s) 445, 1318, 1510
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
EciI GGCGGA 1 cut(s) 341
Ecl136II GAGCTC 3 cut(s) 232, 331, 1405
Eco130I CCWWGG 2 cut(s) 621, 1322
Eco24I GRGCYC 3 cut(s) 234, 333, 1407
Eco47I GGWCC 2 cut(s) 1217, 1459
Eco53kI GAGCTC 3 cut(s) 232, 331, 1405
Eco57I CTGAAG 5 cut(s) 309, 845, 1143, 1601, 1665
Eco88I CYCGRG 1 cut(s) 233
EcoICRI GAGCTC 3 cut(s) 232, 331, 1405
EcoT14I CCWWGG 2 cut(s) 621, 1322
EcoT22I ATGCAT 1 cut(s) 652
EcoT38I GRGCYC 3 cut(s) 234, 333, 1407
ErhI CCWWGG 2 cut(s) 621, 1322
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 3 cut(s) 230, 1326, 1588
FalI AAGNNNNNCTT 2 cut(s) 1374, 1406
FaqI GGGAC 2 cut(s) 532, 1402
FatI CATG 3 cut(s) 226, 1322, 1584
FauI CCCGC 3 cut(s) 64, 75, 183
Fnu4HI GCNGC 3 cut(s) 1004, 1536, 1613
FokI GGATG 3 cut(s) 199, 656, 809
FriOI GRGCYC 3 cut(s) 234, 333, 1407
Fsp4HI GCNGC 3 cut(s) 1004, 1536, 1613
FspBI CTAG 4 cut(s) 468, 900, 980, 1349
GlaI GCGC 5 cut(s) 12, 22, 137, 597, 1664
GluI GCNGC 3 cut(s) 1004, 1536, 1613
GsaI CCCAGC 1 cut(s) 1632
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 1529
HapII CCGG 2 cut(s) 80, 121
HhaI GCGC 5 cut(s) 13, 23, 138, 598, 1665
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 3 cut(s) 230, 1326, 1588
Hin6I GCGC 5 cut(s) 11, 21, 136, 596, 1663
HinP1I GCGC 5 cut(s) 11, 21, 136, 596, 1663
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HindIII AAGCTT 1 cut(s) 1174
HinfI GANTC 9 cut(s) 197, 545, 617, 697, 835, 859, 1133, 1208, 1496
HpaI GTTAAC 1 cut(s) 709
HpaII CCGG 2 cut(s) 80, 121
HphI GGTGA 3 cut(s) 775, 862, 1478
Hpy166II GTNNAC 2 cut(s) 709, 1093
Hpy188I TCNGA 8 cut(s) 247, 313, 517, 864, 1213, 1306, 1375, 1579
Hpy188III TCNNGA 4 cut(s) 449, 549, 1156, 1514
Hpy8I GTNNAC 2 cut(s) 709, 1093
Hpy99I CGWCG 5 cut(s) 197, 260, 263, 322, 325
HpyAV CCTTC 8 cut(s) 37, 493, 781, 859, 884, 1191, 1582, 1600
HpyCH4III ACNGT 9 cut(s) 105, 367, 415, 443, 1090, 1204, 1225, 1447, 1463
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 6 cut(s) 650, 715, 950, 1018, 1228, 1333
HpyF10VI GCNNNNNNNGC 5 cut(s) 403, 593, 1387, 1535, 1618
HpyF3I CTNAG 5 cut(s) 312, 332, 663, 846, 1413
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 3 cut(s) 230, 1326, 1588
HspAI GCGC 5 cut(s) 11, 21, 136, 596, 1663
KspAI GTTAAC 1 cut(s) 709
Kzo9I GATC 3 cut(s) 445, 1318, 1510
LmnI GCTCC 4 cut(s) 248, 284, 328, 1543
Lsp1109I GCAGC 2 cut(s) 1522, 1624
LweI GCATC 4 cut(s) 637, 1342, 1423, 1459
MaeI CTAG 4 cut(s) 468, 900, 980, 1349
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 205
MalI GATC 3 cut(s) 447, 1320, 1512
MboI GATC 3 cut(s) 445, 1318, 1510
MhlI GDGCHC 3 cut(s) 234, 333, 1407
MlyI GAGTC 5 cut(s) 554, 626, 829, 1142, 1505
MmeI TCCRAC 1 cut(s) 270
Mph1103I ATGCAT 1 cut(s) 652
MseI TTAA 4 cut(s) 302, 708, 813, 831
MspA1I CMGCKG 1 cut(s) 1621
MspI CCGG 2 cut(s) 80, 121
MvnI CGCG 2 cut(s) 13, 598
MwoI GCNNNNNNNGC 5 cut(s) 403, 593, 1387, 1535, 1618
NcoI CCATGG 1 cut(s) 1322
NdeII GATC 3 cut(s) 445, 1318, 1510
NlaIII CATG 3 cut(s) 230, 1326, 1588
NlaIV GGNNCC 3 cut(s) 534, 730, 1074
NsiI ATGCAT 1 cut(s) 652
NspV TTCGAA 1 cut(s) 656
PaeR7I CTCGAG 1 cut(s) 233
PfeI GAWTC 4 cut(s) 197, 697, 859, 1208
PkrI GCNGC 3 cut(s) 1005, 1537, 1614
PleI GAGTC 5 cut(s) 553, 625, 829, 1141, 1504
PpsI GAGTC 5 cut(s) 553, 625, 829, 1141, 1504
Psp124BI GAGCTC 3 cut(s) 234, 333, 1407
PspFI CCCAGC 1 cut(s) 1628
PspN4I GGNNCC 3 cut(s) 534, 730, 1074
PspPI GGNCC 3 cut(s) 1217, 1459, 1527
PspXI VCTCGAGB 1 cut(s) 233
PsrI GAACNNNNNNTAC 2 cut(s) 901, 933
PvuII CAGCTG 1 cut(s) 1621
RsaI GTAC 3 cut(s) 102, 961, 1087
RsaNI GTAC 3 cut(s) 101, 960, 1086
SacI GAGCTC 3 cut(s) 234, 333, 1407
SaqAI TTAA 4 cut(s) 302, 708, 813, 831
SatI GCNGC 3 cut(s) 1004, 1536, 1613
Sau3AI GATC 3 cut(s) 445, 1318, 1510
Sau96I GGNCC 3 cut(s) 1217, 1459, 1527
SchI GAGTC 5 cut(s) 554, 626, 829, 1142, 1505
SduI GDGCHC 3 cut(s) 234, 333, 1407
SfaNI GCATC 4 cut(s) 637, 1342, 1423, 1459
SfcI CTRYAG 1 cut(s) 407
Sfr274I CTCGAG 1 cut(s) 233
SfuI TTCGAA 1 cut(s) 656
SinI GGWCC 2 cut(s) 1217, 1459
SlaI CTCGAG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SsiI CCGC 9 cut(s) 5, 57, 68, 176, 326, 748, 1004, 1076, 1242
SspMI CTAG 4 cut(s) 468, 900, 980, 1349
SstI GAGCTC 3 cut(s) 234, 333, 1407
StyI CCWWGG 2 cut(s) 621, 1322
TaaI ACNGT 9 cut(s) 105, 367, 415, 443, 1090, 1204, 1225, 1447, 1463
TaiI ACGT 1 cut(s) 261
TaqI TCGA 4 cut(s) 195, 234, 294, 656
TaqII GACCGA 1 cut(s) 264
TauI GCSGC 1 cut(s) 1006
TfiI GAWTC 4 cut(s) 197, 697, 859, 1208
Tru1I TTAA 4 cut(s) 302, 708, 813, 831
Tru9I TTAA 4 cut(s) 302, 708, 813, 831
TscAI CASTG 4 cut(s) 340, 448, 1281, 1537
TseI GCWGC 2 cut(s) 1535, 1612
TspDTI ATGAA 4 cut(s) 468, 948, 1550, 1601
TspGWI ACGGA 3 cut(s) 82, 88, 525
TspRI CASTG 4 cut(s) 340, 448, 1281, 1537
VpaK11BI GGWCC 2 cut(s) 1217, 1459
XapI RAATTY 4 cut(s) 75, 144, 350, 1188
XhoI CTCGAG 1 cut(s) 233
XspI CTAG 4 cut(s) 468, 900, 980, 1349
ZraI GACGTC 1 cut(s) 259
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.