RLG00000007617

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013202
Physical Location & Seq
Reverse (-)
19055353 .. 19056918
1566 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007617

Sequence Viewer

Length: 558 bp
ATGTGGTTTGGTTTGATGAGTCCCGATTGGGGGAGAAAATTGAAGAGATTAGAGCAATGGCGGAAAGCGCGAAAGATTGAGAAGAATGAGTCGGAGGGAAGTGTTGGAAATGAGGATGATGCATTTTCGAAATCTAGGAACAAAATTGGGATTGAAAAGGAGGTTGGGAAGGTTAACTTGCAGAATAGGTTGGGTTCCAAAATGGAGAAGTTGTCGGGTTCATTTGTGAATTATCTGGAAATGTTTGGGAAGTTTGAAGATGGGGTGAGGAAGAATAATGAGAATGGGAAGGAGGGGCACGGGGCATTGATAGGTTCTGATGGGCAAGGAGGGCTTTCTAGCATAGAGCTCAATTCTCAGACCCAAAACGAGTGTGATGCTTCCTACACTGTTGCTTTTGAGGACCGTGGTGATGTCAATAACTTCTGTTTCCTATTGGAATCTTCTATTGATGATCAAGATGATTTCAGGGCCAATGCTGCTCCTTTACCAAATAAAGAACTTCATAAAGCAGTAAAATCGGATGACATGAAGGTAATTGTTATGAAGAAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3110

Protein Analysis

186

Amino Acids

20.8

Weight (kDa)

5.61

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15820
fragaria_vesca FvH4_4g18220
malus_domestica MD13G1168100.v1.1
prunus_persica Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1
pyrus_communis pycom13g14390
rosa_chinensis RchiOBHm_Chr4g0422351
rosa_laevigata RLG00000007617
rosa_multiflora Rmu_sc0013245.1_g000011
rosa_roxburghii Rroxscaffold_5G00364460 Rroxscaffold_5G00364470
rosa_rugosa Rorug04G0179300
rosa_samantha Rh4AG238700 Rh4BG242300 Rh4CG253800 Rh4DG237700
rosa_wichuraiana Rw4G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 70
AciI CCGC 1 cut(s) 61
AfiI CCNNNNNNNGG 2 cut(s) 29, 30
AgsI TTSAA 3 cut(s) 43, 155, 257
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AluBI AGCT 1 cut(s) 349
AluI AGCT 1 cut(s) 349
Alw21I GWGCWC 1 cut(s) 351
AoxI GGCC 1 cut(s) 471
ApeKI GCWGC 1 cut(s) 479
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 2 cut(s) 403, 471
AsuHPI GGTGA 2 cut(s) 277, 422
AsuII TTCGAA 1 cut(s) 128
AvaII GGWCC 1 cut(s) 403
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 466
BccI CCATC 2 cut(s) 254, 314
BcgI CGANNNNNNTGC 4 cut(s) 359, 393, 501, 535
BclI TGATCA 1 cut(s) 454
BfaI CTAG 2 cut(s) 135, 339
BisI GCNGC 1 cut(s) 480
BlsI GCNGC 1 cut(s) 481
Bme18I GGWCC 1 cut(s) 403
BmgT120I GGNCC 2 cut(s) 403, 471
BmiI GGNNCC 1 cut(s) 196
BmsI GCATC 2 cut(s) 109, 367
Bpu14I TTCGAA 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 30
Bse3DI GCAATG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 2 cut(s) 121, 529
BseLI CCNNNNNNNGG 2 cut(s) 29, 30
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 371
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 466
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 473
BsiHKAI GWGCWC 1 cut(s) 351
BslFI GGGAC 1 cut(s) 6
BslI CCNNNNNNNGG 2 cut(s) 29, 30
BsmFI GGGAC 1 cut(s) 6
BsnI GGCC 1 cut(s) 473
Bsp119I TTCGAA 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 300, 351
Bsp143I GATC 1 cut(s) 454
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 473
BspCNI CTCAG 1 cut(s) 370
BspFNI CGCG 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 196
BspT104I TTCGAA 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 1 cut(s) 454
Bst4CI ACNGT 2 cut(s) 391, 407
Bst6I CTCTTC 1 cut(s) 38
BstBI TTCGAA 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 357
BstDSI CCRYGG 1 cut(s) 406
BstF5I GGATG 2 cut(s) 121, 529
BstFNI CGCG 1 cut(s) 70
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 1 cut(s) 457
BstMBI GATC 1 cut(s) 454
BstMWI GCNNNNNNNGC 3 cut(s) 67, 331, 479
BstSLI GKGCMC 1 cut(s) 300
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 466
BsuRI GGCC 1 cut(s) 473
BtgI CCRYGG 1 cut(s) 406
BtsCI GGATG 2 cut(s) 121, 529
BtsIMutI CAGTG 1 cut(s) 387
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 403, 471
CviAII CATG 1 cut(s) 529
CviJI RGCY 3 cut(s) 334, 349, 473
CviKI_1 RGCY 3 cut(s) 334, 349, 473
DdeI CTNAG 1 cut(s) 357
DpnI GATC 1 cut(s) 456
DpnII GATC 1 cut(s) 454
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 1 cut(s) 76
Ecl136II GAGCTC 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 403
Eco53kI GAGCTC 1 cut(s) 349
EcoICRI GAGCTC 1 cut(s) 349
EcoT22I ATGCAT 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 351
FaeI CATG 1 cut(s) 532
FaiI YATR 4 cut(s) 344, 507, 530, 545
FalI AAGNNNNNCTT 4 cut(s) 161, 193, 318, 350
FaqI GGGAC 1 cut(s) 6
FatI CATG 1 cut(s) 528
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 1 cut(s) 480
FokI GGATG 2 cut(s) 128, 536
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 1 cut(s) 480
FspBI CTAG 2 cut(s) 135, 339
GlaI GCGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 480
HaeIII GGCC 1 cut(s) 473
HhaI GCGC 1 cut(s) 70
Hin1II CATG 1 cut(s) 532
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 3 cut(s) 19, 89, 440
HpaI GTTAAC 1 cut(s) 175
HphI GGTGA 2 cut(s) 277, 422
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 4 cut(s) 94, 319, 360, 523
Hpy188III TCNNGA 3 cut(s) 23, 236, 458
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 4 cut(s) 163, 283, 526, 544
HpyCH4III ACNGT 2 cut(s) 391, 407
HpyCH4V TGCA 2 cut(s) 122, 181
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 331, 479
HpyF3I CTNAG 1 cut(s) 357
Hsp92II CATG 1 cut(s) 532
HspAI GCGC 1 cut(s) 68
Ksp22I TGATCA 1 cut(s) 454
KspAI GTTAAC 1 cut(s) 175
Kzo9I GATC 1 cut(s) 454
LmnI GCTCC 1 cut(s) 487
LpnPI CCDG 2 cut(s) 221, 454
Lsp1109I GCAGC 1 cut(s) 466
LweI GCATC 2 cut(s) 109, 367
MaeI CTAG 2 cut(s) 135, 339
MalI GATC 1 cut(s) 456
MboI GATC 1 cut(s) 454
MboII GAAGA 5 cut(s) 55, 94, 269, 283, 435
MhlI GDGCHC 2 cut(s) 300, 351
MluCI AATT 5 cut(s) 38, 144, 229, 352, 537
MlyI GAGTC 2 cut(s) 28, 98
MmeI TCCRAC 2 cut(s) 72, 85
MnlI CCTC 7 cut(s) 88, 106, 154, 261, 286, 323, 394
Mph1103I ATGCAT 1 cut(s) 124
MseI TTAA 1 cut(s) 174
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 3 cut(s) 67, 331, 479
NdeII GATC 1 cut(s) 454
NlaIII CATG 1 cut(s) 532
NlaIV GGNNCC 1 cut(s) 196
NsiI ATGCAT 1 cut(s) 124
NspV TTCGAA 1 cut(s) 128
PfeI GAWTC 1 cut(s) 440
PkrI GCNGC 1 cut(s) 481
PleI GAGTC 2 cut(s) 27, 97
PpsI GAGTC 2 cut(s) 27, 97
Psp124BI GAGCTC 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 2 cut(s) 403, 471
SacI GAGCTC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 480
Sau3AI GATC 1 cut(s) 454
Sau96I GGNCC 2 cut(s) 403, 471
SchI GAGTC 2 cut(s) 28, 98
SduI GDGCHC 2 cut(s) 300, 351
SetI ASST 6 cut(s) 165, 174, 191, 316, 351, 537
SfaNI GCATC 2 cut(s) 109, 367
SfuI TTCGAA 1 cut(s) 128
SinI GGWCC 1 cut(s) 403
Sse9I AATT 5 cut(s) 38, 144, 229, 352, 537
SsiI CCGC 1 cut(s) 61
SspMI CTAG 2 cut(s) 135, 339
SstI GAGCTC 1 cut(s) 351
TaaI ACNGT 2 cut(s) 391, 407
TaqI TCGA 1 cut(s) 128
TasI AATT 5 cut(s) 38, 144, 229, 352, 537
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 394
TseI GCWGC 1 cut(s) 479
TspDTI ATGAA 3 cut(s) 210, 494, 545
TspRI CASTG 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 403
XspI CTAG 2 cut(s) 135, 339
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.