RchiOBHm_Chr4g0422351

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0013202
Physical Location & Seq
Forward (+)
47980314 .. 47983049
2736 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39191

Sequence Viewer

Length: 1725 bp
ATGGCGGGTGCGCGTCTTTGCGCCACCTTCCCCAATCTCGCACACCCAATCTTACCCGCCACCACCTCGCCCAAAATTCCTGTATCAGCCTCCGTTTCCGTACCGTCAAAAATCACTCGCCGGAAGAACTATTTGCGCCCCAAAATTCTCAAAACCCTAAACCCTAAACCCGACCCGCAAACCGCACAGCCCGTAGTTCCCGTCGAATCTCCAGTAACCCCATCCCAAGATAACCATGAGCTCGAGCATAGCTCCGACCGAGGCGACGTCGTTTTGGGAGGAGGAGGAGGAGCTGAAGTCGAAGAATTAAGAGTGTCTGAGACGACGGCGGAGCTCAGTGGCATTTCTGGTAAATTTTCTGCGAGGACTGTGCTAAAATATGGGGGCTATTTTATTGGGCTTTTTGTGCTACAGACTGTTGTTTCTGTTTTGTTATTGGGAGATAGTGATCCTGATGAAAATAGCAAGTCTAGGAGTTCAGTATTAGGCAAATCCAATATGAAGACGAGTTCTGGGTCTGAATTGGGCAATGTGGTTCGGTTTGATGAGTCCCGATTGGGAGAGAAAATTGAAGAGATTAGGGCAATGGCAAGGAAAGCGCGAAAGATTGAGAAGAATGAGTCCAAGGGAAGTATTGGAAATGAGGATGATGCATTTTCGAAATCTAAAATTAAGATTGGGATTGAAAAGGAGGTTGGGAATCGGTTGGTTAACTTGCAGAAGAAGTTGGGTTCCAAAAGGGAGAAGTTGCCGGGTTCGTTTGTGAATTATCTGGAAATGTTTGGGAAGTTTGAAGACGGGGTGAGGAAGAATAATGAGAATGTGAAGGAGGGGGATGGGGCGTTGATGTTTAAGAAGAAGCTGAAGTTTAAGACTCCTACTGCTGAGGTGAATAGGAATCCGAAGGGTTTTGGAGGTGTCAAAGAGGAAGGTGGTTCTAGTAAGAATAAGACAGGTTCAGGTGGTGTAGATGAAATTGGGAGAAATGCAAGTGTTGGTACTGATGGTATGGAATTGCTGGAAGCTGATGCTAAGGAGAAACCGCGAGAGACTTTGGAGAAAGGAACAGGGAGATTAGATGAAGGACAGGACAGAGAAGCTGGAAATATGGTACCGCAGAATGGTACTGTCCACAGGACTATACAAGGGAGGTCATCTGCTGAAGATGTAGAGTCAATCAAACCAAGAGGCTTTGGGAAGAAAAACCCTGAAAGCTTGAAGAAAGAAATTCAGGGAAGGACAGTAGAATCAGATGGTCCTACTGTGCAGAGTGTGAGTAGCGGTTCAACACAGAAAAAAGCCAAAAAACAAGCACTGGCTAACAAAGTCAGTAGTAAGCAGTCAGACAATGAGACTGATCCATGGTGGTTGCATCTTCCTTATGTTCTAGTTATTTTTATGCGTAGAGGTTCTGATGGGCAAGGAGGGCTTTTTAGCATAGAGCTCAATTCTCAGTCCCAAAACGAGAGTGATGCTTCCTATAGTGTTGCTTTTGAGGACCGTGGTGATGCCAATAACTTCTGTTTCCTATTGGAGTCTTGTTTTGAAGATCAAGATGATTTCAGGGCCACTGCTGCTCCCTTACCAAATAAAGAACTTCATAAAGCAGTAAAATCAGATGACATGAAGGTAATTGTTGTGAAGAAGGGGCAGCTTCAGCTGTATGCTGGGCAACCTTTTGCTGAAGTTGAAATGGCTTTGCGCTCTTTAGTTTTACAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3110

Protein Analysis

574

Amino Acids

62.39

Weight (kDa)

8.9

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3110 PF11360 473 - 552 9.7e-06 Protein of unknown function (DUF3110)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15820
fragaria_vesca FvH4_4g18220
malus_domestica MD13G1168100.v1.1
prunus_persica Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1
pyrus_communis pycom13g14390
rosa_chinensis RchiOBHm_Chr4g0422351
rosa_laevigata RLG00000007617
rosa_multiflora Rmu_sc0013245.1_g000011
rosa_roxburghii Rroxscaffold_5G00364460 Rroxscaffold_5G00364470
rosa_rugosa Rorug04G0179300
rosa_samantha Rh4AG238700 Rh4BG242300 Rh4CG253800 Rh4DG237700
rosa_wichuraiana Rw4G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 270
Acc65I GGTACC 1 cut(s) 1111
AccB1I GGYRCC 1 cut(s) 1111
AccII CGCG 3 cut(s) 13, 601, 1045
AciI CCGC 8 cut(s) 5, 57, 176, 183, 329, 1043, 1115, 1281
AclWI GGATC 2 cut(s) 443, 1352
AcsI RAATTY 4 cut(s) 75, 144, 353, 1227
AcuI CTGAAG 5 cut(s) 315, 884, 1182, 1640, 1704
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 4 cut(s) 102, 1000, 1113, 1126
AfiI CCNNNNNNNGG 1 cut(s) 1121
AgsI TTSAA 7 cut(s) 572, 686, 794, 1219, 1287, 1547, 1691
AjuI GAANNNNNNNTTGG 2 cut(s) 678, 710
Alw21I GWGCWC 3 cut(s) 243, 336, 1446
Alw26I GTCTC 3 cut(s) 314, 1043, 1346
AlwI GGATC 2 cut(s) 443, 1352
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 1 cut(s) 1566
ApeKI GCWGC 2 cut(s) 1574, 1651
ApoI RAATTY 4 cut(s) 75, 144, 353, 1227
Asp718I GGTACC 1 cut(s) 1111
AspLEI GCGC 5 cut(s) 13, 23, 138, 601, 1704
AspS9I GGNCC 3 cut(s) 1256, 1498, 1566
AsuC2I CCSGG 1 cut(s) 753
AsuHPI GGTGA 3 cut(s) 814, 901, 1517
AsuII TTCGAA 1 cut(s) 659
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 2 cut(s) 1256, 1498
BanI GGYRCC 1 cut(s) 1111
BanII GRGCYC 3 cut(s) 243, 336, 1446
BbsI GAAGAC 2 cut(s) 509, 801
Bbv12I GWGCWC 3 cut(s) 243, 336, 1446
BbvCI CCTCAGC 1 cut(s) 885
BbvI GCAGC 2 cut(s) 1561, 1663
BccI CCATC 5 cut(s) 229, 830, 998, 1247, 1409
BceAI ACGGC 1 cut(s) 342
BcgI CGANNNNNNTGC 4 cut(s) 352, 386, 1454, 1488
BcnI CCSGG 1 cut(s) 753
BcoDI GTCTC 3 cut(s) 314, 1043, 1346
BfaI CTAG 3 cut(s) 471, 939, 1388
BfmI CTRYAG 2 cut(s) 410, 1480
BisI GCNGC 2 cut(s) 1575, 1652
BlsI GCNGC 2 cut(s) 1576, 1653
Bme1390I CCNGG 1 cut(s) 753
Bme18I GGWCC 2 cut(s) 1256, 1498
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 3 cut(s) 1256, 1498, 1566
BmiI GGNNCC 2 cut(s) 733, 1113
BmrFI CCNGG 1 cut(s) 753
BmsI GCATC 5 cut(s) 640, 1018, 1381, 1462, 1498
BpiI GAAGAC 2 cut(s) 509, 801
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpmI CTGGAG 1 cut(s) 195
Bpu10I CCTNAGC 2 cut(s) 885, 1032
Bpu14I TTCGAA 1 cut(s) 659
BpuMI CCSGG 1 cut(s) 753
BsaBI GATNNNNATC 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 4 cut(s) 259, 624, 1361, 1501
BsaXI ACNNNNNCTCC 4 cut(s) 282, 312, 1561, 1591
Bsc4I CCNNNNNNNGG 1 cut(s) 1121
Bse1I ACTGG 2 cut(s) 212, 1320
Bse3DI GCAATG 2 cut(s) 535, 591
Bse8I GATNNNNATC 1 cut(s) 447
BseDI CCNNGG 4 cut(s) 259, 624, 1361, 1501
BseGI GGATG 3 cut(s) 221, 652, 841
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 1 cut(s) 1121
BseMI GCAATG 2 cut(s) 535, 591
BseMII CTCAG 4 cut(s) 309, 349, 876, 1466
BseNI ACTGG 2 cut(s) 212, 1320
BseRI GAGGAG 4 cut(s) 294, 297, 300, 303
BseXI GCAGC 2 cut(s) 1561, 1663
BseYI CCCAGC 1 cut(s) 1667
BsgI GTGCAG 1 cut(s) 1286
Bsh1236I CGCG 3 cut(s) 13, 601, 1045
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 1 cut(s) 1568
BshNI GGYRCC 1 cut(s) 1111
BsiEI CGRYCG 1 cut(s) 259
BsiHKAI GWGCWC 3 cut(s) 243, 336, 1446
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 2 cut(s) 121, 752
BslFI GGGAC 2 cut(s) 535, 1441
BslI CCNNNNNNNGG 1 cut(s) 1121
BsmAI GTCTC 3 cut(s) 314, 1043, 1346
BsmBI CGTCTC 1 cut(s) 314
BsmFI GGGAC 2 cut(s) 535, 1441
BsnI GGCC 1 cut(s) 1568
BsoBI CYCGRG 1 cut(s) 242
Bsp119I TTCGAA 1 cut(s) 659
Bsp1286I GDGCHC 3 cut(s) 243, 336, 1446
Bsp143I GATC 3 cut(s) 448, 1357, 1549
Bsp19I CCATGG 1 cut(s) 1361
BspACI CCGC 8 cut(s) 5, 57, 176, 183, 329, 1043, 1115, 1281
BspANI GGCC 1 cut(s) 1568
BspCNI CTCAG 4 cut(s) 310, 348, 877, 1465
BspFNI CGCG 3 cut(s) 13, 601, 1045
BspLI GGNNCC 2 cut(s) 733, 1113
BspPI GGATC 2 cut(s) 443, 1352
BspT104I TTCGAA 1 cut(s) 659
BspT107I GGYRCC 1 cut(s) 1111
BsrDI GCAATG 2 cut(s) 535, 591
BsrI ACTGG 2 cut(s) 212, 1320
BssECI CCNNGG 4 cut(s) 259, 624, 1361, 1501
BssMI GATC 3 cut(s) 448, 1357, 1549
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 2 cut(s) 624, 1361
Bst4CI ACNGT 7 cut(s) 105, 370, 418, 1129, 1243, 1264, 1502
Bst6I CTCTTC 1 cut(s) 567
BstACI GRCGYC 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 659
BstDEI CTNAG 5 cut(s) 318, 335, 885, 1032, 1452
BstDSI CCRYGG 2 cut(s) 1361, 1501
BstF5I GGATG 3 cut(s) 221, 652, 841
BstFNI CGCG 3 cut(s) 13, 601, 1045
BstHHI GCGC 5 cut(s) 13, 23, 138, 601, 1704
BstKTI GATC 3 cut(s) 451, 1360, 1552
BstMAI GTCTC 3 cut(s) 314, 1043, 1346
BstMBI GATC 3 cut(s) 448, 1357, 1549
BstMCI CGRYCG 1 cut(s) 259
BstMWI GCNNNNNNNGC 5 cut(s) 406, 596, 1426, 1574, 1657
BstSCI CCNGG 1 cut(s) 751
BstSFI CTRYAG 2 cut(s) 410, 1480
BstUI CGCG 3 cut(s) 13, 601, 1045
BstV1I GCAGC 2 cut(s) 1561, 1663
BstV2I GAAGAC 2 cut(s) 509, 801
BsuRI GGCC 1 cut(s) 1568
BtgI CCRYGG 2 cut(s) 1361, 1501
BtsCI GGATG 3 cut(s) 221, 652, 841
BtsI GCAGTG 1 cut(s) 1569
BtsIMutI CAGTG 3 cut(s) 343, 1313, 1569
CfoI GCGC 5 cut(s) 13, 23, 138, 601, 1704
Cfr13I GGNCC 3 cut(s) 1256, 1498, 1566
CseI GACGC 1 cut(s) 2
Csp6I GTAC 4 cut(s) 101, 999, 1112, 1125
CviAII CATG 3 cut(s) 236, 1362, 1624
CviQI GTAC 4 cut(s) 101, 999, 1112, 1125
DdeI CTNAG 5 cut(s) 318, 335, 885, 1032, 1452
DpnI GATC 3 cut(s) 450, 1359, 1551
DpnII GATC 3 cut(s) 448, 1357, 1549
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
EciI GGCGGA 1 cut(s) 344
Ecl136II GAGCTC 3 cut(s) 241, 334, 1444
Eco130I CCWWGG 2 cut(s) 624, 1361
Eco24I GRGCYC 3 cut(s) 243, 336, 1446
Eco47I GGWCC 2 cut(s) 1256, 1498
Eco53kI GAGCTC 3 cut(s) 241, 334, 1444
Eco57I CTGAAG 5 cut(s) 315, 884, 1182, 1640, 1704
Eco88I CYCGRG 1 cut(s) 242
EcoICRI GAGCTC 3 cut(s) 241, 334, 1444
EcoT14I CCWWGG 2 cut(s) 624, 1361
EcoT22I ATGCAT 1 cut(s) 655
EcoT38I GRGCYC 3 cut(s) 243, 336, 1446
ErhI CCWWGG 2 cut(s) 624, 1361
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 3 cut(s) 239, 1365, 1627
FalI AAGNNNNNCTT 2 cut(s) 1413, 1445
FaqI GGGAC 2 cut(s) 535, 1441
FatI CATG 3 cut(s) 235, 1361, 1623
FauI CCCGC 2 cut(s) 64, 183
Fnu4HI GCNGC 2 cut(s) 1575, 1652
FokI GGATG 3 cut(s) 208, 659, 848
FriOI GRGCYC 3 cut(s) 243, 336, 1446
Fsp4HI GCNGC 2 cut(s) 1575, 1652
FspBI CTAG 3 cut(s) 471, 939, 1388
GlaI GCGC 5 cut(s) 12, 22, 137, 600, 1703
GluI GCNGC 2 cut(s) 1575, 1652
GsaI CCCAGC 1 cut(s) 1671
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 1 cut(s) 1568
HapII CCGG 2 cut(s) 121, 752
HgaI GACGC 1 cut(s) 2
HhaI GCGC 5 cut(s) 13, 23, 138, 601, 1704
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 3 cut(s) 239, 1365, 1627
Hin6I GCGC 5 cut(s) 11, 21, 136, 599, 1702
HinP1I GCGC 5 cut(s) 11, 21, 136, 599, 1702
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HindIII AAGCTT 1 cut(s) 1213
HinfI GANTC 9 cut(s) 206, 548, 620, 700, 874, 898, 1172, 1247, 1535
HpaI GTTAAC 1 cut(s) 712
HpaII CCGG 2 cut(s) 121, 752
HphI GGTGA 3 cut(s) 814, 901, 1517
Hpy166II GTNNAC 2 cut(s) 712, 1132
Hpy188I TCNGA 8 cut(s) 256, 319, 520, 903, 1252, 1345, 1414, 1618
Hpy188III TCNNGA 4 cut(s) 452, 552, 773, 1553
Hpy8I GTNNAC 2 cut(s) 712, 1132
Hpy99I CGWCG 4 cut(s) 206, 269, 272, 328
HpyAV CCTTC 8 cut(s) 37, 820, 898, 923, 1076, 1230, 1621, 1639
HpyCH4III ACNGT 7 cut(s) 105, 370, 418, 1129, 1243, 1264, 1502
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 5 cut(s) 653, 718, 989, 1267, 1372
HpyF10VI GCNNNNNNNGC 5 cut(s) 406, 596, 1426, 1574, 1657
HpyF3I CTNAG 5 cut(s) 318, 335, 885, 1032, 1452
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 3 cut(s) 239, 1365, 1627
HspAI GCGC 5 cut(s) 11, 21, 136, 599, 1702
KpnI GGTACC 1 cut(s) 1115
KspAI GTTAAC 1 cut(s) 712
Kzo9I GATC 3 cut(s) 448, 1357, 1549
LmnI GCTCC 4 cut(s) 257, 290, 331, 1582
Lsp1109I GCAGC 2 cut(s) 1561, 1663
LweI GCATC 5 cut(s) 640, 1018, 1381, 1462, 1498
MaeI CTAG 3 cut(s) 471, 939, 1388
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 214
MalI GATC 3 cut(s) 450, 1359, 1551
MboI GATC 3 cut(s) 448, 1357, 1549
MhlI GDGCHC 3 cut(s) 243, 336, 1446
MlyI GAGTC 5 cut(s) 557, 629, 868, 1181, 1544
MmeI TCCRAC 1 cut(s) 279
Mph1103I ATGCAT 1 cut(s) 655
MseI TTAA 5 cut(s) 308, 672, 711, 852, 870
MspA1I CMGCKG 1 cut(s) 1660
MspI CCGG 2 cut(s) 121, 752
MspR9I CCNGG 1 cut(s) 753
MvnI CGCG 3 cut(s) 13, 601, 1045
MwoI GCNNNNNNNGC 5 cut(s) 406, 596, 1426, 1574, 1657
NciI CCSGG 1 cut(s) 753
NcoI CCATGG 1 cut(s) 1361
NdeII GATC 3 cut(s) 448, 1357, 1549
NlaIII CATG 3 cut(s) 239, 1365, 1627
NlaIV GGNNCC 2 cut(s) 733, 1113
NsiI ATGCAT 1 cut(s) 655
NspV TTCGAA 1 cut(s) 659
PaeR7I CTCGAG 1 cut(s) 242
PfeI GAWTC 4 cut(s) 206, 700, 898, 1247
PkrI GCNGC 2 cut(s) 1576, 1653
PleI GAGTC 5 cut(s) 556, 628, 868, 1180, 1543
PpsI GAGTC 5 cut(s) 556, 628, 868, 1180, 1543
Psp124BI GAGCTC 3 cut(s) 243, 336, 1446
PspFI CCCAGC 1 cut(s) 1667
PspN4I GGNNCC 2 cut(s) 733, 1113
PspPI GGNCC 3 cut(s) 1256, 1498, 1566
PspXI VCTCGAGB 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 1660
RsaI GTAC 4 cut(s) 102, 1000, 1113, 1126
RsaNI GTAC 4 cut(s) 101, 999, 1112, 1125
SacI GAGCTC 3 cut(s) 243, 336, 1446
SaqAI TTAA 5 cut(s) 308, 672, 711, 852, 870
SatI GCNGC 2 cut(s) 1575, 1652
Sau3AI GATC 3 cut(s) 448, 1357, 1549
Sau96I GGNCC 3 cut(s) 1256, 1498, 1566
SchI GAGTC 5 cut(s) 557, 629, 868, 1181, 1544
ScrFI CCNGG 1 cut(s) 753
SduI GDGCHC 3 cut(s) 243, 336, 1446
SfaNI GCATC 5 cut(s) 640, 1018, 1381, 1462, 1498
SfcI CTRYAG 2 cut(s) 410, 1480
Sfr274I CTCGAG 1 cut(s) 242
SfuI TTCGAA 1 cut(s) 659
SinI GGWCC 2 cut(s) 1256, 1498
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SsiI CCGC 8 cut(s) 5, 57, 176, 183, 329, 1043, 1115, 1281
SspMI CTAG 3 cut(s) 471, 939, 1388
SstI GAGCTC 3 cut(s) 243, 336, 1446
StyD4I CCNGG 1 cut(s) 751
StyI CCWWGG 2 cut(s) 624, 1361
TaaI ACNGT 7 cut(s) 105, 370, 418, 1129, 1243, 1264, 1502
TaiI ACGT 1 cut(s) 270
TaqI TCGA 4 cut(s) 204, 243, 300, 659
TaqII GACCGA 1 cut(s) 273
TfiI GAWTC 4 cut(s) 206, 700, 898, 1247
Tru1I TTAA 5 cut(s) 308, 672, 711, 852, 870
Tru9I TTAA 5 cut(s) 308, 672, 711, 852, 870
TscAI CASTG 3 cut(s) 343, 1320, 1576
TseI GCWGC 2 cut(s) 1574, 1651
TspDTI ATGAA 6 cut(s) 471, 515, 987, 1095, 1589, 1640
TspGWI ACGGA 2 cut(s) 82, 88
TspRI CASTG 3 cut(s) 343, 1320, 1576
VpaK11BI GGWCC 2 cut(s) 1256, 1498
XapI RAATTY 4 cut(s) 75, 144, 353, 1227
XhoI CTCGAG 1 cut(s) 242
XspI CTAG 3 cut(s) 471, 939, 1388
ZraI GACGTC 1 cut(s) 268
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.