Rmu_sc0013245.1_g000011

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013245.1
OG0013202
Physical Location & Seq
Reverse (-)
34442 .. 36610
2169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013245.1_g000011.1.cds

Sequence Viewer

Length: 1731 bp
atggcgggtgcgcgtctttgcgccaccttccccaatctcgcacacccaatcttacccgccaccaccccgcccaaaattcctgtatcagcctccgtttccgtaccgtcaaaaatcactcgccggaagaactatttgcgccccaaaattctcaaaaccctaaaccctaaacccgacccgcaacccgcacagcccgtagttcctgtcgaatctccagtaaccccatcccaagataaccatgagctcgagcatggctccgaccgaggcgacgtcgctttgggaggaggaggaggagctgaagtcgaagaattaagagtgtccgagacgacggcggagctcagtggcatttctggtaaattttctgcgaggaatgtgctaaagtatgggggttattttattgggctttttgtgctacagactgttgtttctgttttgttattgggagatagtgatcctgatgaaaatagcaagtctaggagttcagtattaggcaaatccaatttgaagacgagttctgggtctgaattaggcaatgtggttcggtttgatgagtcccaattgggagagaaaattgaagagattagggcaatggcaaggaaagcgcgaaagattgagaagaatgagtccaagggaagtattggaaatgaggatgatgcattttcgaagtctaagaacaagattgggattgaaaaggaggttgggaaccggttggttaatttgcagaagaggttgggttccaaaagggagaagttgcctggttcgtttgtgaattttctggaaatgtttgggaagtttgaagacggggtgaggaagaataatgagaatgtgaaggagggggatggggcgttgatgtttaagaagaagctgaagtttaagactcctactgctgaggtgaataggaatccgaagggttttggaggtgtcaaagaggaaggtggttctagtaagagtaagagaggttcaggtggtgtagatgaaattgggagaaatgcaagtgttggtactgatggtatggaattgctggaagctgatgctaaggagaagccgcgagagactttggagaaaggaacagggagattagatgaaggacaggacagagaagctggaaatatggtaccgcagaatggtactgtccacaggactatacaggggagatcatctgctgaagatgtaaagtcaatcaaaccaagaggcttcgggaagaaaaacccaaaccctgaaagcttgaaaaaagaaattcagggaaggacagtagaatcagatggtcctactgggcagagtgtgaatagcagttcaacacagaataaagccaaaaaacaagcactggctaacaaagtcagtagtaagcagtcagataatgagactgatccatggtggttgcatcttccttatgttctagttatttttatgcgtagaggttctgatgggcaaggagggctttttagcatagagctcaattctcagtcccaaaacgagagtgatgcttcctatactgttgcttttgaggaccgtggtgatgccaataacttctgtttcctattggagtcttgttttgaagatcaagatgatttcagggccactgctgctcccttgccaaataaagaacttcataaagcagtaaaatcagatgacatgaaggtaattgttgtgaagaaggggcagcttcagctgtatgctgggcaaccttttgctgaagttgaaatggctttgcgctctttagttttacaaaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3110

Protein Analysis

576

Amino Acids

62.57

Weight (kDa)

9.0

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15820
fragaria_vesca FvH4_4g18220
malus_domestica MD13G1168100.v1.1
prunus_persica Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1 Prupe.1G135700_v2.0.a1
pyrus_communis pycom13g14390
rosa_chinensis RchiOBHm_Chr4g0422351
rosa_laevigata RLG00000007617
rosa_multiflora Rmu_sc0013245.1_g000011
rosa_roxburghii Rroxscaffold_5G00364460 Rroxscaffold_5G00364470
rosa_rugosa Rorug04G0179300
rosa_samantha Rh4AG238700 Rh4BG242300 Rh4CG253800 Rh4DG237700
rosa_wichuraiana Rw4G020640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 270
Acc65I GGTACC 1 cut(s) 1111
AccB1I GGYRCC 1 cut(s) 1111
AccII CGCG 3 cut(s) 13, 601, 1045
AciI CCGC 8 cut(s) 5, 57, 68, 176, 183, 329, 1043, 1115
AclWI GGATC 2 cut(s) 443, 1358
AcsI RAATTY 5 cut(s) 75, 144, 353, 766, 1233
AcuI CTGAAG 5 cut(s) 315, 884, 1182, 1646, 1710
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 4 cut(s) 102, 1000, 1113, 1126
AfiI CCNNNNNNNGG 1 cut(s) 1121
AgeI ACCGGT 1 cut(s) 702
AgsI TTSAA 8 cut(s) 502, 572, 686, 794, 1225, 1293, 1553, 1697
AjnI CCWGG 1 cut(s) 751
AjuI GAANNNNNNNTTGG 2 cut(s) 678, 710
Alw21I GWGCWC 3 cut(s) 243, 336, 1452
Alw26I GTCTC 3 cut(s) 314, 1043, 1352
AlwI GGATC 2 cut(s) 443, 1358
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 1 cut(s) 1572
ApeKI GCWGC 2 cut(s) 1580, 1657
ApoI RAATTY 5 cut(s) 75, 144, 353, 766, 1233
AsiGI ACCGGT 1 cut(s) 702
Asp718I GGTACC 1 cut(s) 1111
AspLEI GCGC 5 cut(s) 13, 23, 138, 601, 1710
AspS9I GGNCC 3 cut(s) 1262, 1504, 1572
AsuHPI GGTGA 3 cut(s) 814, 901, 1523
AsuII TTCGAA 1 cut(s) 659
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 2 cut(s) 1262, 1504
BanI GGYRCC 1 cut(s) 1111
BanII GRGCYC 3 cut(s) 243, 336, 1452
BbsI GAAGAC 2 cut(s) 509, 801
Bbv12I GWGCWC 3 cut(s) 243, 336, 1452
BbvCI CCTCAGC 1 cut(s) 885
BbvI GCAGC 2 cut(s) 1567, 1669
BccI CCATC 5 cut(s) 229, 830, 998, 1253, 1415
BceAI ACGGC 1 cut(s) 342
BcgI CGANNNNNNTGC 4 cut(s) 352, 386, 1460, 1494
BciT130I CCWGG 1 cut(s) 753
BcoDI GTCTC 3 cut(s) 314, 1043, 1352
BfaI CTAG 3 cut(s) 471, 939, 1394
BfmI CTRYAG 1 cut(s) 410
BisI GCNGC 3 cut(s) 1043, 1581, 1658
BlsI GCNGC 3 cut(s) 1044, 1582, 1659
Bme1390I CCNGG 1 cut(s) 753
Bme18I GGWCC 2 cut(s) 1262, 1504
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 3 cut(s) 1262, 1504, 1572
BmiI GGNNCC 4 cut(s) 253, 701, 733, 1113
BmrFI CCNGG 1 cut(s) 753
BmrI ACTGGG 1 cut(s) 1278
BmsI GCATC 5 cut(s) 640, 1018, 1387, 1468, 1504
BmuI ACTGGG 1 cut(s) 1278
BpiI GAAGAC 2 cut(s) 509, 801
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpmI CTGGAG 1 cut(s) 195
Bpu10I CCTNAGC 2 cut(s) 885, 1032
Bpu14I TTCGAA 1 cut(s) 659
BsaBI GATNNNNATC 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 4 cut(s) 259, 624, 1367, 1507
BsaWI WCCGGW 1 cut(s) 702
BsaXI ACNNNNNCTCC 4 cut(s) 282, 312, 1567, 1597
Bsc4I CCNNNNNNNGG 1 cut(s) 1121
Bse118I RCCGGY 1 cut(s) 702
Bse1I ACTGG 3 cut(s) 212, 1273, 1326
Bse3DI GCAATG 2 cut(s) 535, 591
Bse8I GATNNNNATC 1 cut(s) 447
BseBI CCWGG 1 cut(s) 753
BseDI CCNNGG 4 cut(s) 259, 624, 1367, 1507
BseGI GGATG 3 cut(s) 221, 652, 841
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 1 cut(s) 1121
BseMI GCAATG 2 cut(s) 535, 591
BseMII CTCAG 3 cut(s) 349, 876, 1472
BseNI ACTGG 3 cut(s) 212, 1273, 1326
BseRI GAGGAG 4 cut(s) 294, 297, 300, 303
BseXI GCAGC 2 cut(s) 1567, 1669
BseYI CCCAGC 1 cut(s) 1673
Bsh1236I CGCG 3 cut(s) 13, 601, 1045
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 1 cut(s) 1574
BshNI GGYRCC 1 cut(s) 1111
BshTI ACCGGT 1 cut(s) 702
BsiEI CGRYCG 1 cut(s) 259
BsiHKAI GWGCWC 3 cut(s) 243, 336, 1452
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 2 cut(s) 121, 703
BslFI GGGAC 2 cut(s) 535, 1447
BslI CCNNNNNNNGG 1 cut(s) 1121
BsmAI GTCTC 3 cut(s) 314, 1043, 1352
BsmBI CGTCTC 1 cut(s) 314
BsmFI GGGAC 2 cut(s) 535, 1447
BsnI GGCC 1 cut(s) 1574
BsoBI CYCGRG 1 cut(s) 242
Bsp119I TTCGAA 1 cut(s) 659
Bsp1286I GDGCHC 3 cut(s) 243, 336, 1452
Bsp143I GATC 4 cut(s) 448, 1151, 1363, 1555
Bsp19I CCATGG 1 cut(s) 1367
BspACI CCGC 8 cut(s) 5, 57, 68, 176, 183, 329, 1043, 1115
BspANI GGCC 1 cut(s) 1574
BspCNI CTCAG 3 cut(s) 348, 877, 1471
BspFNI CGCG 3 cut(s) 13, 601, 1045
BspLI GGNNCC 4 cut(s) 253, 701, 733, 1113
BspPI GGATC 2 cut(s) 443, 1358
BspT104I TTCGAA 1 cut(s) 659
BspT107I GGYRCC 1 cut(s) 1111
BsrDI GCAATG 2 cut(s) 535, 591
BsrFI RCCGGY 1 cut(s) 702
BsrI ACTGG 3 cut(s) 212, 1273, 1326
BssAI RCCGGY 1 cut(s) 702
BssECI CCNNGG 4 cut(s) 259, 624, 1367, 1507
BssMI GATC 4 cut(s) 448, 1151, 1363, 1555
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 2 cut(s) 624, 1367
Bst2UI CCWGG 1 cut(s) 753
Bst4CI ACNGT 6 cut(s) 105, 418, 1129, 1249, 1492, 1508
Bst6I CTCTTC 2 cut(s) 567, 716
BstACI GRCGYC 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 659
BstDEI CTNAG 5 cut(s) 335, 666, 885, 1032, 1458
BstDSI CCRYGG 2 cut(s) 1367, 1507
BstF5I GGATG 3 cut(s) 221, 652, 841
BstFNI CGCG 3 cut(s) 13, 601, 1045
BstHHI GCGC 5 cut(s) 13, 23, 138, 601, 1710
BstKTI GATC 4 cut(s) 451, 1154, 1366, 1558
BstMAI GTCTC 3 cut(s) 314, 1043, 1352
BstMBI GATC 4 cut(s) 448, 1151, 1363, 1555
BstMCI CGRYCG 1 cut(s) 259
BstMWI GCNNNNNNNGC 5 cut(s) 406, 596, 1432, 1580, 1663
BstNI CCWGG 1 cut(s) 753
BstSCI CCNGG 1 cut(s) 751
BstSFI CTRYAG 1 cut(s) 410
BstUI CGCG 3 cut(s) 13, 601, 1045
BstV1I GCAGC 2 cut(s) 1567, 1669
BstV2I GAAGAC 2 cut(s) 509, 801
BsuRI GGCC 1 cut(s) 1574
BtgI CCRYGG 2 cut(s) 1367, 1507
BtsCI GGATG 3 cut(s) 221, 652, 841
BtsI GCAGTG 1 cut(s) 1575
BtsIMutI CAGTG 3 cut(s) 343, 1319, 1575
CfoI GCGC 5 cut(s) 13, 23, 138, 601, 1710
Cfr10I RCCGGY 1 cut(s) 702
Cfr13I GGNCC 3 cut(s) 1262, 1504, 1572
CseI GACGC 1 cut(s) 2
Csp6I GTAC 4 cut(s) 101, 999, 1112, 1125
CspAI ACCGGT 1 cut(s) 702
CviAII CATG 4 cut(s) 236, 248, 1368, 1630
CviQI GTAC 4 cut(s) 101, 999, 1112, 1125
DdeI CTNAG 5 cut(s) 335, 666, 885, 1032, 1458
DpnI GATC 4 cut(s) 450, 1153, 1365, 1557
DpnII GATC 4 cut(s) 448, 1151, 1363, 1555
Eam1104I CTCTTC 2 cut(s) 567, 716
EarI CTCTTC 2 cut(s) 567, 716
EciI GGCGGA 1 cut(s) 344
Ecl136II GAGCTC 3 cut(s) 241, 334, 1450
Eco130I CCWWGG 2 cut(s) 624, 1367
Eco24I GRGCYC 3 cut(s) 243, 336, 1452
Eco47I GGWCC 2 cut(s) 1262, 1504
Eco53kI GAGCTC 3 cut(s) 241, 334, 1450
Eco57I CTGAAG 5 cut(s) 315, 884, 1182, 1646, 1710
Eco88I CYCGRG 1 cut(s) 242
EcoICRI GAGCTC 3 cut(s) 241, 334, 1450
EcoRII CCWGG 1 cut(s) 751
EcoT14I CCWWGG 2 cut(s) 624, 1367
EcoT22I ATGCAT 1 cut(s) 655
EcoT38I GRGCYC 3 cut(s) 243, 336, 1452
ErhI CCWWGG 2 cut(s) 624, 1367
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 4 cut(s) 239, 251, 1371, 1633
FalI AAGNNNNNCTT 2 cut(s) 1419, 1451
FaqI GGGAC 2 cut(s) 535, 1447
FatI CATG 4 cut(s) 235, 247, 1367, 1629
FauI CCCGC 4 cut(s) 64, 75, 183, 190
Fnu4HI GCNGC 3 cut(s) 1043, 1581, 1658
FokI GGATG 3 cut(s) 208, 659, 848
FriOI GRGCYC 3 cut(s) 243, 336, 1452
Fsp4HI GCNGC 3 cut(s) 1043, 1581, 1658
FspBI CTAG 3 cut(s) 471, 939, 1394
GlaI GCGC 5 cut(s) 12, 22, 137, 600, 1709
GluI GCNGC 3 cut(s) 1043, 1581, 1658
GsaI CCCAGC 1 cut(s) 1677
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 1 cut(s) 1574
HapII CCGG 2 cut(s) 121, 703
HgaI GACGC 1 cut(s) 2
HhaI GCGC 5 cut(s) 13, 23, 138, 601, 1710
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 4 cut(s) 239, 251, 1371, 1633
Hin6I GCGC 5 cut(s) 11, 21, 136, 599, 1708
HinP1I GCGC 5 cut(s) 11, 21, 136, 599, 1708
HindIII AAGCTT 1 cut(s) 1219
HinfI GANTC 7 cut(s) 206, 548, 620, 874, 898, 1253, 1541
HpaII CCGG 2 cut(s) 121, 703
HphI GGTGA 3 cut(s) 814, 901, 1523
Hpy166II GTNNAC 1 cut(s) 1132
Hpy188I TCNGA 8 cut(s) 256, 319, 520, 903, 1258, 1351, 1420, 1624
Hpy188III TCNNGA 4 cut(s) 452, 773, 1195, 1559
Hpy8I GTNNAC 1 cut(s) 1132
Hpy99I CGWCG 3 cut(s) 269, 272, 328
HpyAV CCTTC 8 cut(s) 37, 820, 898, 923, 1076, 1236, 1627, 1645
HpyCH4III ACNGT 6 cut(s) 105, 418, 1129, 1249, 1492, 1508
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 4 cut(s) 653, 718, 989, 1378
HpyF10VI GCNNNNNNNGC 5 cut(s) 406, 596, 1432, 1580, 1663
HpyF3I CTNAG 5 cut(s) 335, 666, 885, 1032, 1458
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 4 cut(s) 239, 251, 1371, 1633
HspAI GCGC 5 cut(s) 11, 21, 136, 599, 1708
KpnI GGTACC 1 cut(s) 1115
Kzo9I GATC 4 cut(s) 448, 1151, 1363, 1555
LmnI GCTCC 4 cut(s) 257, 290, 331, 1588
Lsp1109I GCAGC 2 cut(s) 1567, 1669
LweI GCATC 5 cut(s) 640, 1018, 1387, 1468, 1504
MaeI CTAG 3 cut(s) 471, 939, 1394
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 214
MalI GATC 4 cut(s) 450, 1153, 1365, 1557
MboI GATC 4 cut(s) 448, 1151, 1363, 1555
MfeI CAATTG 1 cut(s) 554
MhlI GDGCHC 3 cut(s) 243, 336, 1452
MlyI GAGTC 4 cut(s) 557, 629, 868, 1550
MmeI TCCRAC 1 cut(s) 279
Mph1103I ATGCAT 1 cut(s) 655
MseI TTAA 4 cut(s) 308, 711, 852, 870
MspA1I CMGCKG 1 cut(s) 1666
MspI CCGG 2 cut(s) 121, 703
MspR9I CCNGG 1 cut(s) 753
MunI CAATTG 1 cut(s) 554
MvaI CCWGG 1 cut(s) 753
MvnI CGCG 3 cut(s) 13, 601, 1045
MwoI GCNNNNNNNGC 5 cut(s) 406, 596, 1432, 1580, 1663
NcoI CCATGG 1 cut(s) 1367
NdeII GATC 4 cut(s) 448, 1151, 1363, 1555
NlaIII CATG 4 cut(s) 239, 251, 1371, 1633
NlaIV GGNNCC 4 cut(s) 253, 701, 733, 1113
NsiI ATGCAT 1 cut(s) 655
NspV TTCGAA 1 cut(s) 659
PaeR7I CTCGAG 1 cut(s) 242
PfeI GAWTC 3 cut(s) 206, 898, 1253
PinAI ACCGGT 1 cut(s) 702
PkrI GCNGC 3 cut(s) 1044, 1582, 1659
PleI GAGTC 4 cut(s) 556, 628, 868, 1549
PpsI GAGTC 4 cut(s) 556, 628, 868, 1549
Psp124BI GAGCTC 3 cut(s) 243, 336, 1452
Psp6I CCWGG 1 cut(s) 751
PspFI CCCAGC 1 cut(s) 1673
PspGI CCWGG 1 cut(s) 751
PspN4I GGNNCC 4 cut(s) 253, 701, 733, 1113
PspPI GGNCC 3 cut(s) 1262, 1504, 1572
PspXI VCTCGAGB 1 cut(s) 242
PsrI GAACNNNNNNTAC 2 cut(s) 940, 972
PvuII CAGCTG 1 cut(s) 1666
RsaI GTAC 4 cut(s) 102, 1000, 1113, 1126
RsaNI GTAC 4 cut(s) 101, 999, 1112, 1125
SacI GAGCTC 3 cut(s) 243, 336, 1452
SaqAI TTAA 4 cut(s) 308, 711, 852, 870
SatI GCNGC 3 cut(s) 1043, 1581, 1658
Sau3AI GATC 4 cut(s) 448, 1151, 1363, 1555
Sau96I GGNCC 3 cut(s) 1262, 1504, 1572
SchI GAGTC 4 cut(s) 557, 629, 868, 1550
ScrFI CCNGG 1 cut(s) 753
SduI GDGCHC 3 cut(s) 243, 336, 1452
SfaNI GCATC 5 cut(s) 640, 1018, 1387, 1468, 1504
SfcI CTRYAG 1 cut(s) 410
Sfr274I CTCGAG 1 cut(s) 242
SfuI TTCGAA 1 cut(s) 659
SinI GGWCC 2 cut(s) 1262, 1504
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SsiI CCGC 8 cut(s) 5, 57, 68, 176, 183, 329, 1043, 1115
SspMI CTAG 3 cut(s) 471, 939, 1394
SstI GAGCTC 3 cut(s) 243, 336, 1452
StyD4I CCNGG 1 cut(s) 751
StyI CCWWGG 2 cut(s) 624, 1367
TaaI ACNGT 6 cut(s) 105, 418, 1129, 1249, 1492, 1508
TaiI ACGT 1 cut(s) 270
TaqI TCGA 4 cut(s) 204, 243, 300, 659
TaqII GACCGA 1 cut(s) 273
TauI GCSGC 1 cut(s) 1045
TfiI GAWTC 3 cut(s) 206, 898, 1253
Tru1I TTAA 4 cut(s) 308, 711, 852, 870
Tru9I TTAA 4 cut(s) 308, 711, 852, 870
TscAI CASTG 3 cut(s) 343, 1326, 1582
TseI GCWGC 2 cut(s) 1580, 1657
TspDTI ATGAA 5 cut(s) 471, 987, 1095, 1595, 1646
TspGWI ACGGA 2 cut(s) 82, 88
TspRI CASTG 3 cut(s) 343, 1326, 1582
VpaK11BI GGWCC 2 cut(s) 1262, 1504
XapI RAATTY 5 cut(s) 75, 144, 353, 766, 1233
XhoI CTCGAG 1 cut(s) 242
XspI CTAG 3 cut(s) 471, 939, 1394
ZraI GACGTC 1 cut(s) 268
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.