Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005463

Physical Location & Seq

Genomic Coordinates Reverse (-)

26120226 .. 26122728

Gene Structure 2503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23720.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCTTGCAGAACTGCGTTGCGCTCCGCTATGCTAATAGAAGCGTGGCGACCCGTTCATCTAACTCGGAGCTCCGTTTCCGCTTCCTTCCGAACCCGAACCGGATTCTCCTCTCCGCGGCTGACCCGAGACTTCCACTTCCCCAGACGAACTCTCCTCCATTCCTCCCACAACGAAAACCAACCCTCTCTCTCCGAAGACGAACAAGGCCCCCCTCAGGAGGCCATTCTCAAAGCAATTTCAGAGGTTTCTAGAACTGAAGGAAGAGTTGGGCAGACGACGAATGTGGTGATTGGAGGCACGGTGGCGGATGATTCCACCACTGAATGGCTCGACTTGGATCAGAAGGTAAATTCGTACCCAACTGTTAGAGGGTTCACGGCGATTGGAAGCGGAGGGGATGATTTTGTGCAAGCTATGGTTGTTGCTGTTGAATCCGTGCTTCAACAATCTGTTCCTGAGGATCGTGTCAAGCAGAAGTTATCTTCAGGAGGCAAATATGTGTCTGTAAACATTGGTCCCGTTCAAGTCATTTCTAGTGAACAGGTCCAAGCTGTATACAATGCAATGAGAAGAGATGACCGGATGAAATACTTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF493

Protein Analysis

201

Amino Acids

22.12

Weight (kDa)

7.92

Isoelectric Point (pI)

58.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27385 AT1G27385 AT1G27385 AT1G27385
fragaria_vesca	FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720
malus_domestica	MD13G1119600.v1.1 MD16G1119800.v1.1
prunus_persica	Prupe.1G225400_v2.0.a1 Prupe.1G225400_v2.0.a1
pyrus_communis	pycom13g10420
rosa_chinensis	RchiOBHm_Chr4g0430191 RchiOBHm_Chr4g0430201
rosa_laevigata	RLG00000006994 RLG00000006995
rosa_multiflora	Rmu_sc0001089.1_g000005
rosa_roxburghii	Rroxscaffold_5G00372000
rosa_rugosa	Rorug04G0241500 Rorug04G0241600 Rorug04G0241600
rosa_samantha	Rh4AG298000 Rh4BG304500 Rh4CG319900 Rh4DG301900
rosa_wichuraiana	Rw4G025840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	558
AccII	CGCG	1 cut(s)	118
AciI	CCGC	6 cut(s)	27, 81, 116, 118, 308, 393
AclWI	GGATC	2 cut(s)	348, 471
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	2 cut(s)	279, 471
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	4 cut(s)	117, 217, 220, 327
AgsI	TTSAA	3 cut(s)	434, 446, 527
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	3 cut(s)	72, 416, 554
AluI	AGCT	3 cut(s)	72, 416, 554
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	2 cut(s)	348, 471
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	2 cut(s)	208, 222
ApoI	RAATTY	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	3 cut(s)	209, 518, 547
AsuHPI	GGTGA	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	2 cut(s)	518, 547
AxyI	CCTNAGG	2 cut(s)	216, 459
BanII	GRGCYC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	2 cut(s)	252, 537
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
Bme18I	GGWCC	2 cut(s)	518, 547
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	3 cut(s)	209, 518, 547
BmiI	GGNNCC	2 cut(s)	211, 520
BpiI	GAAGAC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	116
BsaWI	WCCGGW	2 cut(s)	101, 582
BsaXI	ACNNNNNCTCC	4 cut(s)	138, 168, 288, 318
Bsc4I	CCNNNNNNNGG	4 cut(s)	117, 217, 220, 327
Bse21I	CCTNAGG	2 cut(s)	216, 459
Bse3DI	GCAATG	1 cut(s)	573
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	3 cut(s)	316, 406, 591
BseLI	CCNNNNNNNGG	4 cut(s)	117, 217, 220, 327
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	2 cut(s)	230, 450
BseRI	GAGGAG	2 cut(s)	100, 146
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	2 cut(s)	210, 224
BsiHKAI	GWGCWC	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	102, 583
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	4 cut(s)	117, 217, 220, 327
BsmAI	GTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	2 cut(s)	210, 224
BsoBI	CYCGRG	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	340, 463
BspACI	CCGC	6 cut(s)	27, 81, 116, 118, 308, 393
BspANI	GGCC	2 cut(s)	210, 224
BspCNI	CTCAG	2 cut(s)	229, 451
BspFNI	CGCG	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	211, 520
BspPI	GGATC	2 cut(s)	348, 471
BsrDI	GCAATG	1 cut(s)	573
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	2 cut(s)	340, 463
BssNAI	GTATAC	1 cut(s)	559
Bst1107I	GTATAC	1 cut(s)	559
Bst4CI	ACNGT	2 cut(s)	304, 367
Bst6I	CTCTTC	2 cut(s)	259, 568
BstC8I	GCNNGC	2 cut(s)	7, 414
BstDEI	CTNAG	2 cut(s)	216, 459
BstDSI	CCRYGG	1 cut(s)	116
BstF5I	GGATG	3 cut(s)	316, 406, 591
BstFNI	CGCG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	2 cut(s)	343, 466
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	2 cut(s)	340, 463
BstUI	CGCG	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	204
BstZ17I	GTATAC	1 cut(s)	559
Bsu36I	CCTNAGG	2 cut(s)	216, 459
BsuRI	GGCC	2 cut(s)	210, 224
BtgI	CCRYGG	1 cut(s)	116
BtsCI	GGATG	3 cut(s)	316, 406, 591
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	2 cut(s)	7, 414
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	3 cut(s)	209, 518, 547
Cfr42I	CCGCGG	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	358
CviJI	RGCY	8 cut(s)	5, 72, 121, 210, 224, 331, 416, 554
CviKI_1	RGCY	8 cut(s)	5, 72, 121, 210, 224, 331, 416, 554
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	2 cut(s)	216, 459
DpnI	GATC	2 cut(s)	342, 465
DpnII	GATC	2 cut(s)	340, 463
Eam1104I	CTCTTC	2 cut(s)	259, 568
EarI	CTCTTC	2 cut(s)	259, 568
EciI	GGCGGA	1 cut(s)	323
Ecl136II	GAGCTC	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	74
Eco47I	GGWCC	2 cut(s)	518, 547
Eco53kI	GAGCTC	1 cut(s)	72
Eco57I	CTGAAG	2 cut(s)	279, 471
Eco81I	CCTNAGG	2 cut(s)	216, 459
Eco88I	CYCGRG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	74
FaiI	YATR	4 cut(s)	32, 419, 501, 559
FaqI	GGGAC	1 cut(s)	504
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	3 cut(s)	323, 413, 598
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	2 cut(s)	252, 537
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	210, 224
HapII	CCGG	2 cut(s)	102, 583
HhaI	GCGC	1 cut(s)	24
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	3 cut(s)	105, 314, 434
HpaII	CCGG	2 cut(s)	102, 583
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	4 cut(s)	378, 511, 542, 559
Hpy188I	TCNGA	5 cut(s)	69, 92, 196, 244, 345
Hpy188III	TCNNGA	4 cut(s)	218, 252, 458, 489
Hpy8I	GTNNAC	4 cut(s)	378, 511, 542, 559
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	3 cut(s)	97, 254, 340
HpyCH4III	ACNGT	2 cut(s)	304, 367
HpyCH4V	TGCA	3 cut(s)	9, 412, 566
HpyF3I	CTNAG	2 cut(s)	216, 459
HspAI	GCGC	1 cut(s)	22
KspI	CCGCGG	1 cut(s)	119
Kzo9I	GATC	2 cut(s)	340, 463
LmnI	GCTCC	3 cut(s)	29, 69, 77
LpnPI	CCDG	7 cut(s)	115, 157, 203, 471, 474, 530, 596
MaeI	CTAG	2 cut(s)	252, 537
MalI	GATC	2 cut(s)	342, 465
MboI	GATC	2 cut(s)	340, 463
MboII	GAAGA	4 cut(s)	209, 276, 477, 585
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	2 cut(s)	237, 352
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	2 cut(s)	102, 583
MvnI	CGCG	1 cut(s)	118
NdeII	GATC	2 cut(s)	340, 463
NlaIV	GGNNCC	2 cut(s)	211, 520
PfeI	GAWTC	3 cut(s)	105, 314, 434
PflMI	CCANNNNNTGG	1 cut(s)	327
PkrI	GCNGC	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	211, 520
PspPI	GGNCC	3 cut(s)	209, 518, 547
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SacI	GAGCTC	1 cut(s)	74
SacII	CCGCGG	1 cut(s)	119
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	2 cut(s)	340, 463
Sau96I	GGNCC	3 cut(s)	209, 518, 547
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	6 cut(s)	74, 249, 351, 418, 549, 556
Sfr303I	CCGCGG	1 cut(s)	119
SgrBI	CCGCGG	1 cut(s)	119
SinI	GGWCC	2 cut(s)	518, 547
Sse9I	AATT	2 cut(s)	237, 352
SsiI	CCGC	6 cut(s)	27, 81, 116, 118, 308, 393
SspMI	CTAG	2 cut(s)	252, 537
SstI	GAGCTC	1 cut(s)	74
TaaI	ACNGT	2 cut(s)	304, 367
TaqI	TCGA	1 cut(s)	333
TasI	AATT	2 cut(s)	237, 352
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	3 cut(s)	105, 314, 434
TscAI	CASTG	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	47, 602
TspGWI	ACGGA	2 cut(s)	64, 427
TspRI	CASTG	1 cut(s)	328
Van91I	CCANNNNNTGG	1 cut(s)	327
VpaK11BI	GGWCC	2 cut(s)	518, 547
XapI	RAATTY	1 cut(s)	352
XbaI	TCTAGA	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	558
XspI	CTAG	2 cut(s)	252, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.