Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005463

Physical Location & Seq

Genomic Coordinates Forward (+)

12537276 .. 12538056

Gene Structure 781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006995

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAGTACTGGAGCTCTCGCCGGCGTCGCACCGTCCCACCACCGCAACCACCAGTTGCAATCGCCGGAGAGAGGGATGATGTTGCCGGCGCTGGACCGGCTGCTGATGTCGCTGAGACTTCCACCAACACTCATCATCGTCATCAGAATCTCAACATCAACCCAGCACTATTAATCGTGCCACCGGAGACTACTGCTGATATGATGTTGTTGAGAGTTCCACTACCACTCATCTCGGCGGCGAAGAAGAAGCTGCCATGCTGGCAAGAGTGCGATCTGATCGAGCTTCACCAGAGAGGATTCGACGAGTTGGTCCACGGTGCTGCACCCCATGGTCACCCAGCAGATGGTACGGTGGCGGCGGAGTCGTTGTCTGGTCAAGGCCCAGACCCAGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.37

Weight (kDa)

6.13

Isoelectric Point (pI)

56.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27385 AT1G27385 AT1G27385 AT1G27385
fragaria_vesca	FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720
malus_domestica	MD13G1119600.v1.1 MD16G1119800.v1.1
prunus_persica	Prupe.1G225400_v2.0.a1 Prupe.1G225400_v2.0.a1
pyrus_communis	pycom13g10420
rosa_chinensis	RchiOBHm_Chr4g0430191 RchiOBHm_Chr4g0430201
rosa_laevigata	RLG00000006994 RLG00000006995
rosa_multiflora	Rmu_sc0001089.1_g000005
rosa_roxburghii	Rroxscaffold_5G00372000
rosa_rugosa	Rorug04G0241500 Rorug04G0241600 Rorug04G0241600
rosa_samantha	Rh4AG298000 Rh4BG304500 Rh4CG319900 Rh4DG301900
rosa_wichuraiana	Rw4G025840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
AccB7I	CCANNNNNTGG	1 cut(s)	347
AciI	CCGC	4 cut(s)	44, 239, 359, 362
AcyI	GRCGYC	1 cut(s)	25
AfaI	GTAC	2 cut(s)	8, 352
AfiI	CCNNNNNNNGG	2 cut(s)	72, 347
AluBI	AGCT	3 cut(s)	15, 253, 286
AluI	AGCT	3 cut(s)	15, 253, 286
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	2 cut(s)	110, 182
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	3 cut(s)	101, 253, 323
AseI	ATTAAT	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	3 cut(s)	95, 313, 383
AsuHPI	GGTGA	2 cut(s)	281, 329
AvaII	GGWCC	2 cut(s)	95, 313
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	3 cut(s)	88, 240, 310
BccI	CCATC	1 cut(s)	341
BcoDI	GTCTC	2 cut(s)	110, 182
BfoI	RGCGCY	1 cut(s)	93
BglI	GCCNNNNNGGC	1 cut(s)	262
BisI	GCNGC	5 cut(s)	102, 240, 254, 324, 360
BlsI	GCNGC	5 cut(s)	103, 241, 255, 325, 361
BmcAI	AGTACT	1 cut(s)	8
Bme18I	GGWCC	2 cut(s)	95, 313
BmgT120I	GGNCC	3 cut(s)	95, 313, 383
BpmI	CTGGAG	1 cut(s)	31
Bsa29I	ATCGAT	1 cut(s)	397
BsaHI	GRCGYC	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	316, 331
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 347
Bse118I	RCCGGY	3 cut(s)	21, 86, 97
Bse1I	ACTGG	2 cut(s)	14, 53
BseCI	ATCGAT	1 cut(s)	397
BseDI	CCNNGG	2 cut(s)	316, 331
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	2 cut(s)	72, 347
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	2 cut(s)	14, 53
BseXI	GCAGC	3 cut(s)	88, 240, 310
BseYI	CCCAGC	2 cut(s)	163, 340
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	384
BshVI	ATCGAT	1 cut(s)	397
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	5 cut(s)	22, 66, 87, 98, 185
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	72, 347
BsmAI	GTCTC	2 cut(s)	110, 182
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	3 cut(s)	274, 279, 394
Bsp19I	CCATGG	1 cut(s)	331
BspACI	CCGC	4 cut(s)	44, 239, 359, 362
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	1 cut(s)	106
BspDI	ATCGAT	1 cut(s)	397
BsrFI	RCCGGY	3 cut(s)	21, 86, 97
BsrI	ACTGG	2 cut(s)	14, 53
BssAI	RCCGGY	3 cut(s)	21, 86, 97
BssECI	CCNNGG	2 cut(s)	316, 331
BssMI	GATC	3 cut(s)	274, 279, 394
BssNI	GRCGYC	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	331
Bst4CI	ACNGT	3 cut(s)	34, 320, 355
BstACI	GRCGYC	1 cut(s)	25
BstC8I	GCNNGC	3 cut(s)	23, 88, 263
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	2 cut(s)	316, 331
BstEII	GGTNACC	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	3 cut(s)	277, 282, 397
BstMAI	GTCTC	2 cut(s)	110, 182
BstMBI	GATC	3 cut(s)	274, 279, 394
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 98, 110, 262
BstPI	GGTNACC	1 cut(s)	335
BstV1I	GCAGC	3 cut(s)	88, 240, 310
Bsu15I	ATCGAT	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	384
BsuTUI	ATCGAT	1 cut(s)	397
BtgI	CCRYGG	2 cut(s)	316, 331
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	3 cut(s)	23, 88, 263
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	3 cut(s)	21, 86, 97
Cfr13I	GGNCC	3 cut(s)	95, 313, 383
ClaI	ATCGAT	1 cut(s)	397
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	7, 351
CviAII	CATG	2 cut(s)	258, 332
CviJI	RGCY	5 cut(s)	15, 101, 253, 286, 384
CviKI_1	RGCY	5 cut(s)	15, 101, 253, 286, 384
CviQI	GTAC	2 cut(s)	7, 351
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	3 cut(s)	276, 281, 396
DpnII	GATC	3 cut(s)	274, 279, 394
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
EciI	GGCGGA	1 cut(s)	377
Ecl136II	GAGCTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	17
Eco47I	GGWCC	2 cut(s)	95, 313
Eco53kI	GAGCTC	1 cut(s)	15
Eco91I	GGTNACC	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	15
EcoO65I	GGTNACC	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	2 cut(s)	261, 335
FaiI	YATR	3 cut(s)	203, 259, 333
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	2 cut(s)	257, 331
Fnu4HI	GCNGC	5 cut(s)	102, 240, 254, 324, 360
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	5 cut(s)	102, 240, 254, 324, 360
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	5 cut(s)	102, 240, 254, 324, 360
GsaI	CCCAGC	2 cut(s)	167, 344
GsuI	CTGGAG	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	5 cut(s)	22, 66, 87, 98, 185
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	25
Hin1II	CATG	2 cut(s)	261, 335
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	3 cut(s)	148, 300, 365
HpaII	CCGG	5 cut(s)	22, 66, 87, 98, 185
HphI	GGTGA	2 cut(s)	281, 329
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	2 cut(s)	147, 279
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	2 cut(s)	30, 308
HpyCH4III	ACNGT	3 cut(s)	34, 320, 355
HpyCH4V	TGCA	2 cut(s)	59, 326
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 98, 110, 262
HpyF3I	CTNAG	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	25
Hsp92II	CATG	2 cut(s)	261, 335
HspAI	GCGC	1 cut(s)	90
KroI	GCCGGC	2 cut(s)	21, 86
KroNI	GCCGGC	2 cut(s)	23, 88
Kzo9I	GATC	3 cut(s)	274, 279, 394
LmnI	GCTCC	1 cut(s)	12
Lsp1109I	GCAGC	3 cut(s)	88, 240, 310
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	3 cut(s)	276, 281, 396
MboI	GATC	3 cut(s)	274, 279, 394
MboII	GAAGA	2 cut(s)	256, 259
MhlI	GDGCHC	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	2 cut(s)	66, 290
MreI	CGCCGGCG	1 cut(s)	21
MroNI	GCCGGC	2 cut(s)	21, 86
MseI	TTAA	1 cut(s)	173
MspI	CCGG	5 cut(s)	22, 66, 87, 98, 185
MwoI	GCNNNNNNNGC	4 cut(s)	27, 98, 110, 262
NaeI	GCCGGC	2 cut(s)	23, 88
NcoI	CCATGG	1 cut(s)	331
NdeII	GATC	3 cut(s)	274, 279, 394
NgoMIV	GCCGGC	2 cut(s)	21, 86
NlaIII	CATG	2 cut(s)	261, 335
NmeAIII	GCCGAG	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	335
PdiI	GCCGGC	2 cut(s)	23, 88
PfeI	GAWTC	2 cut(s)	148, 300
PflMI	CCANNNNNTGG	1 cut(s)	347
PkrI	GCNGC	5 cut(s)	103, 241, 255, 325, 361
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PshBI	ATTAAT	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	17
PspEI	GGTNACC	1 cut(s)	335
PspFI	CCCAGC	2 cut(s)	163, 340
PspPI	GGNCC	3 cut(s)	95, 313, 383
RsaI	GTAC	2 cut(s)	8, 352
RsaNI	GTAC	2 cut(s)	7, 351
SacI	GAGCTC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	5 cut(s)	102, 240, 254, 324, 360
Sau3AI	GATC	3 cut(s)	274, 279, 394
Sau96I	GGNCC	3 cut(s)	95, 313, 383
ScaI	AGTACT	1 cut(s)	8
SchI	GAGTC	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	3 cut(s)	17, 255, 288
SgrAI	CRCCGGYG	1 cut(s)	21
SinI	GGWCC	2 cut(s)	95, 313
SsiI	CCGC	4 cut(s)	44, 239, 359, 362
SstI	GAGCTC	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	3 cut(s)	34, 320, 355
TaqI	TCGA	3 cut(s)	282, 303, 397
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	2 cut(s)	242, 362
TfiI	GAWTC	2 cut(s)	148, 300
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	3 cut(s)	101, 253, 323
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	347
VpaK11BI	GGWCC	2 cut(s)	95, 313
VspI	ATTAAT	1 cut(s)	173
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.