Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005463

Physical Location & Seq

Genomic Coordinates Forward (+)

6975768 .. 6978575

Gene Structure 2808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCGTGCAGGACTGCGCTACGATCCGCTCTGCTAATAGAAGCGTGGCGACCCGTTCATCTCGCTCAGAGCTCCGCCTCCGCCTCGTTCAAGACCCGCGGGTTCTCCTCCCCCAGGCTGACCCGCCACTTCAGGACCCGGGACGTCCACTTCGCGCGACGGACTCACCTCAACCGCGCCCACAACGAAAATTCGTCGGATTTGCCGGAGGACGACCAGGGCCCGCCGCAAGAGGCCATCTTGAAAGCAATTTCAGAGGTTTCGAAGACAGAAGGGAGAGTTGGGCAGACGACGAATGTGGTTATCGGAGGCACAGTGGCGGATGATTCTACGAATGAATGGGTCGACTTAGATCAGAAGGTAAATTCGTATCCAACTGTTAGAGGGTTCACAGCAATTGGAACTGGAGGGGATGATTTTGTTCAAGCTATGGTTGTTGCTGTCGAATCCGTAATTCAACAACCTGTCCCCGAGGGTCATGTGAGGCAGAAGGTGTCATCAAGGGGAAAATATGTATCTGTAAACATTGGACCTGTTCAAGTAATTTCAAGTGAACAGGTCCAAGCTGTATACAACGCCATGAGAAGAGATGATCGGATGAAATACTTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF493

Protein Analysis

205

Amino Acids

22.56

Weight (kDa)

9.16

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27385 AT1G27385 AT1G27385 AT1G27385
fragaria_vesca	FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720
malus_domestica	MD13G1119600.v1.1 MD16G1119800.v1.1
prunus_persica	Prupe.1G225400_v2.0.a1 Prupe.1G225400_v2.0.a1
pyrus_communis	pycom13g10420
rosa_chinensis	RchiOBHm_Chr4g0430191 RchiOBHm_Chr4g0430201
rosa_laevigata	RLG00000006994 RLG00000006995
rosa_multiflora	Rmu_sc0001089.1_g000005
rosa_roxburghii	Rroxscaffold_5G00372000
rosa_rugosa	Rorug04G0241500 Rorug04G0241600 Rorug04G0241600
rosa_samantha	Rh4AG298000 Rh4BG304500 Rh4CG319900 Rh4DG301900
rosa_wichuraiana	Rw4G025840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
AccBSI	CCGCTC	1 cut(s)	29
AccI	GTMKAC	2 cut(s)	345, 570
AccII	CGCG	4 cut(s)	99, 155, 157, 177
AclWI	GGATC	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	190, 364
AcuI	CTGAAG	1 cut(s)	115
AcyI	GRCGYC	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	6 cut(s)	91, 244, 425, 458, 539, 549
AjnI	CCWGG	2 cut(s)	113, 216
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AluBI	AGCT	3 cut(s)	72, 428, 566
AluI	AGCT	3 cut(s)	72, 428, 566
Alw21I	GWGCWC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	18
Ama87I	CYCGRG	2 cut(s)	138, 470
AoxI	GGCC	2 cut(s)	220, 234
ApaI	GGGCCC	1 cut(s)	224
ApoI	RAATTY	2 cut(s)	190, 364
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AspLEI	GCGC	3 cut(s)	19, 157, 179
AspS9I	GGNCC	5 cut(s)	135, 220, 221, 530, 559
AsuC2I	CCSGG	2 cut(s)	139, 140
AsuHPI	GGTGA	1 cut(s)	158
AsuII	TTCGAA	1 cut(s)	263
AvaI	CYCGRG	2 cut(s)	138, 470
AvaII	GGWCC	3 cut(s)	135, 530, 559
BaeGI	GKGCMC	1 cut(s)	224
BanII	GRGCYC	2 cut(s)	74, 224
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	74
BccI	CCATC	1 cut(s)	245
BciT130I	CCWGG	2 cut(s)	115, 218
BciVI	GTATCC	1 cut(s)	381
BcnI	CCSGG	2 cut(s)	139, 140
BfuI	GTATCC	1 cut(s)	381
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	4 cut(s)	115, 139, 140, 218
Bme18I	GGWCC	3 cut(s)	135, 530, 559
BmeT110I	CYCGRG	2 cut(s)	138, 470
BmgT120I	GGNCC	5 cut(s)	135, 220, 221, 530, 559
BmiI	GGNNCC	2 cut(s)	137, 222
BmrFI	CCNGG	4 cut(s)	115, 139, 140, 218
BpiI	GAAGAC	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	263
BpuMI	CCSGG	2 cut(s)	139, 140
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	5 cut(s)	97, 113, 138, 217, 471
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	409
BseBI	CCWGG	2 cut(s)	115, 218
BseDI	CCNNGG	5 cut(s)	97, 113, 138, 217, 471
BseGI	GGATG	3 cut(s)	328, 418, 603
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	409
BseRI	GAGGAG	1 cut(s)	97
BseSI	GKGCMC	1 cut(s)	224
BsgI	GTGCAG	1 cut(s)	28
Bsh1236I	CGCG	4 cut(s)	99, 155, 157, 177
BshFI	GGCC	2 cut(s)	222, 236
BsiHKAI	GWGCWC	1 cut(s)	74
BsiHKCI	CYCGRG	2 cut(s)	138, 470
BsiSI	CCGG	2 cut(s)	139, 206
BslFI	GGGAC	2 cut(s)	155, 452
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmFI	GGGAC	2 cut(s)	155, 452
BsnI	GGCC	2 cut(s)	222, 236
BsoBI	CYCGRG	2 cut(s)	138, 470
Bsp119I	TTCGAA	1 cut(s)	263
Bsp120I	GGGCCC	1 cut(s)	220
Bsp1286I	GDGCHC	2 cut(s)	74, 224
Bsp143I	GATC	3 cut(s)	23, 352, 592
BspANI	GGCC	2 cut(s)	222, 236
BspCNI	CTCAG	1 cut(s)	79
BspFNI	CGCG	4 cut(s)	99, 155, 157, 177
BspLI	GGNNCC	2 cut(s)	137, 222
BspPI	GGATC	1 cut(s)	18
BspT104I	TTCGAA	1 cut(s)	263
BsrBI	CCGCTC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	5 cut(s)	97, 113, 138, 217, 471
BssMI	GATC	3 cut(s)	23, 352, 592
BssNAI	GTATAC	1 cut(s)	571
BssNI	GRCGYC	1 cut(s)	144
Bst1107I	GTATAC	1 cut(s)	571
Bst2UI	CCWGG	2 cut(s)	115, 218
Bst4CI	ACNGT	2 cut(s)	316, 379
Bst6I	CTCTTC	1 cut(s)	580
BstACI	GRCGYC	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	7, 224
BstDEI	CTNAG	2 cut(s)	66, 349
BstDSI	CCRYGG	1 cut(s)	97
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstF5I	GGATG	3 cut(s)	328, 418, 603
BstFNI	CGCG	4 cut(s)	99, 155, 157, 177
BstHHI	GCGC	3 cut(s)	19, 157, 179
BstKTI	GATC	3 cut(s)	26, 355, 595
BstMBI	GATC	3 cut(s)	23, 352, 592
BstNI	CCWGG	2 cut(s)	115, 218
BstSCI	CCNGG	4 cut(s)	113, 137, 138, 216
BstSLI	GKGCMC	1 cut(s)	224
BstUI	CGCG	4 cut(s)	99, 155, 157, 177
BstV2I	GAAGAC	1 cut(s)	272
BstZ17I	GTATAC	1 cut(s)	571
BsuI	GTATCC	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	222, 236
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	3 cut(s)	328, 418, 603
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	2 cut(s)	7, 224
CfoI	GCGC	3 cut(s)	19, 157, 179
Cfr13I	GGNCC	5 cut(s)	135, 220, 221, 530, 559
Cfr42I	CCGCGG	1 cut(s)	100
Cfr9I	CCCGGG	1 cut(s)	138
CviAII	CATG	2 cut(s)	479, 580
CviJI	RGCY	6 cut(s)	72, 118, 222, 236, 428, 566
CviKI_1	RGCY	6 cut(s)	72, 118, 222, 236, 428, 566
DdeI	CTNAG	2 cut(s)	66, 349
DpnI	GATC	3 cut(s)	25, 354, 594
DpnII	GATC	3 cut(s)	23, 352, 592
Eam1104I	CTCTTC	1 cut(s)	580
EarI	CTCTTC	1 cut(s)	580
EciI	GGCGGA	3 cut(s)	64, 70, 335
Ecl136II	GAGCTC	1 cut(s)	72
Eco24I	GRGCYC	2 cut(s)	74, 224
Eco47I	GGWCC	3 cut(s)	135, 530, 559
Eco53kI	GAGCTC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	115
Eco88I	CYCGRG	2 cut(s)	138, 470
EcoICRI	GAGCTC	1 cut(s)	72
EcoNI	CCTNNNNNAGG	1 cut(s)	112
EcoO109I	RGGNCCY	2 cut(s)	135, 220
EcoRII	CCWGG	2 cut(s)	113, 216
EcoT38I	GRGCYC	2 cut(s)	74, 224
FaeI	CATG	2 cut(s)	482, 583
FaiI	YATR	5 cut(s)	431, 480, 513, 571, 581
FaqI	GGGAC	2 cut(s)	155, 452
FatI	CATG	2 cut(s)	478, 579
FauI	CCCGC	4 cut(s)	92, 104, 131, 231
FblI	GTMKAC	2 cut(s)	345, 570
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	3 cut(s)	335, 425, 610
FriOI	GRGCYC	2 cut(s)	74, 224
Fsp4HI	GCNGC	1 cut(s)	227
GlaI	GCGC	3 cut(s)	18, 156, 178
GluI	GCNGC	1 cut(s)	227
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	222, 236
HapII	CCGG	2 cut(s)	139, 206
HhaI	GCGC	3 cut(s)	19, 157, 179
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	2 cut(s)	482, 583
Hin6I	GCGC	3 cut(s)	17, 155, 177
HinP1I	GCGC	3 cut(s)	17, 155, 177
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	3 cut(s)	163, 326, 446
HpaII	CCGG	2 cut(s)	139, 206
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	6 cut(s)	148, 346, 390, 523, 554, 571
Hpy188I	TCNGA	6 cut(s)	69, 199, 256, 308, 357, 597
Hpy188III	TCNNGA	3 cut(s)	91, 133, 241
Hpy8I	GTNNAC	6 cut(s)	148, 346, 390, 523, 554, 571
Hpy99I	CGWCG	3 cut(s)	162, 199, 295
HpyAV	CCTTC	3 cut(s)	266, 352, 484
HpyCH4III	ACNGT	2 cut(s)	316, 379
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	1 cut(s)	9
HpyF3I	CTNAG	2 cut(s)	66, 349
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	482, 583
HspAI	GCGC	3 cut(s)	17, 155, 177
KspI	CCGCGG	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	23, 352, 592
LmnI	GCTCC	1 cut(s)	77
MaeII	ACGT	1 cut(s)	144
MalI	GATC	3 cut(s)	25, 354, 594
MbiI	CCGCTC	1 cut(s)	29
MboI	GATC	3 cut(s)	23, 352, 592
MboII	GAAGA	2 cut(s)	277, 597
MfeI	CAATTG	1 cut(s)	396
MhlI	GDGCHC	2 cut(s)	74, 224
MluCI	AATT	6 cut(s)	190, 249, 364, 396, 453, 543
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	2 cut(s)	177, 398
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	2 cut(s)	139, 206
MspR9I	CCNGG	4 cut(s)	115, 139, 140, 218
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	2 cut(s)	115, 218
MvnI	CGCG	4 cut(s)	99, 155, 157, 177
NciI	CCSGG	2 cut(s)	139, 140
NdeII	GATC	3 cut(s)	23, 352, 592
NlaIII	CATG	2 cut(s)	482, 583
NlaIV	GGNNCC	2 cut(s)	137, 222
NspV	TTCGAA	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	326, 446
PkrI	GCNGC	1 cut(s)	228
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PpuMI	RGGWCCY	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	135
Psp6I	CCWGG	2 cut(s)	113, 216
PspGI	CCWGG	2 cut(s)	113, 216
PspN4I	GGNNCC	2 cut(s)	137, 222
PspOMI	GGGCCC	1 cut(s)	220
PspPI	GGNCC	5 cut(s)	135, 220, 221, 530, 559
PspPPI	RGGWCCY	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	74
SacII	CCGCGG	1 cut(s)	100
SalI	GTCGAC	1 cut(s)	344
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	3 cut(s)	23, 352, 592
Sau96I	GGNCC	5 cut(s)	135, 220, 221, 530, 559
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	4 cut(s)	115, 139, 140, 218
SduI	GDGCHC	2 cut(s)	74, 224
Sfr303I	CCGCGG	1 cut(s)	100
SfuI	TTCGAA	1 cut(s)	263
SgrBI	CCGCGG	1 cut(s)	100
SinI	GGWCC	3 cut(s)	135, 530, 559
SmaI	CCCGGG	1 cut(s)	140
Sse9I	AATT	6 cut(s)	190, 249, 364, 396, 453, 543
SstI	GAGCTC	1 cut(s)	74
StyD4I	CCNGG	4 cut(s)	113, 137, 138, 216
TaaI	ACNGT	2 cut(s)	316, 379
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	3 cut(s)	263, 345, 444
TasI	AATT	6 cut(s)	190, 249, 364, 396, 453, 543
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	2 cut(s)	326, 446
TscAI	CASTG	1 cut(s)	321
TspDTI	ATGAA	3 cut(s)	47, 351, 614
TspGWI	ACGGA	2 cut(s)	175, 439
TspMI	CCCGGG	1 cut(s)	138
TspRI	CASTG	1 cut(s)	321
VpaK11BI	GGWCC	3 cut(s)	135, 530, 559
XagI	CCTNNNNNAGG	1 cut(s)	112
XapI	RAATTY	2 cut(s)	190, 364
XmaI	CCCGGG	1 cut(s)	138
XmiI	GTMKAC	2 cut(s)	345, 570
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.