Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005463

Physical Location & Seq

Genomic Coordinates Reverse (-)

23897677 .. 23901349

Gene Structure 3673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G225400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCGTGCAGGACTGCGTTGCGTTCCGCTCTGTTAATAGAAGCGTGTCGGCCCGTTCATCTCACTCGGAGCTCCGCCTCCGCTTCATTCAGGACCCGCGGGTTCCCCTCTCCCAGGCTGAATGGGCAGTTCAGGACCCGGGGTTTCCACTTCGCCAAACGGACGCACCTCAACTGCTCCCACAACGAAAACGCGTCGTCTTTGTCTGAGGACGAACAAGGCCCGCCCCAAGAGGCCGTTTTGAAAGCAATTTCAGAGGTGTCTAAAACGGAAGGGAGAGTTGGGCAAACCACGAATGTGGTGATTGGAGGTACGGTGACAGATGATTCTACGAATGAATGGCTCGCCTTGGACCAGAAGGTAAATTCGTACCCGACTGTTAGAGGGTTTACAGCGATTGGAACTGGAGGGGATGATTTTGTGCAAGCTATGGTTGTTGCTGTCGAATCCGTAATTCAACAACCTGTTCCTGAGGGTCATGTGAGGCAGAAGGTATCATCAAGGGGCAAATATGTATCTGTAAACATTGGACCTGTTCAAGTCATTTCTAGTGAACAGGTCCAAGCTGTGTACAACGCCATGAGAAGAGATGATCGGATGAAATACTTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF493

Protein Analysis

205

Amino Acids

22.35

Weight (kDa)

9.33

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27385 AT1G27385 AT1G27385 AT1G27385
fragaria_vesca	FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720
malus_domestica	MD13G1119600.v1.1 MD16G1119800.v1.1
prunus_persica	Prupe.1G225400_v2.0.a1 Prupe.1G225400_v2.0.a1
pyrus_communis	pycom13g10420
rosa_chinensis	RchiOBHm_Chr4g0430191 RchiOBHm_Chr4g0430201
rosa_laevigata	RLG00000006994 RLG00000006995
rosa_multiflora	Rmu_sc0001089.1_g000005
rosa_roxburghii	Rroxscaffold_5G00372000
rosa_rugosa	Rorug04G0241500 Rorug04G0241600 Rorug04G0241600
rosa_samantha	Rh4AG298000 Rh4BG304500 Rh4CG319900 Rh4DG301900
rosa_wichuraiana	Rw4G025840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	29
AccII	CGCG	2 cut(s)	99, 194
AciI	CCGC	6 cut(s)	27, 75, 81, 97, 99, 224
AcsI	RAATTY	1 cut(s)	364
AfaI	GTAC	3 cut(s)	313, 371, 572
AfiI	CCNNNNNNNGG	1 cut(s)	114
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	3 cut(s)	244, 458, 539
AjnI	CCWGG	1 cut(s)	113
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AleI	CACNNNNGTG	1 cut(s)	296
AluBI	AGCT	3 cut(s)	72, 428, 566
AluI	AGCT	3 cut(s)	72, 428, 566
Alw21I	GWGCWC	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	3 cut(s)	50, 220, 234
ApoI	RAATTY	1 cut(s)	364
AspS9I	GGNCC	7 cut(s)	51, 93, 135, 221, 352, 530, 559
AsuC2I	CCSGG	2 cut(s)	139, 140
AsuHPI	GGTGA	2 cut(s)	313, 328
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	5 cut(s)	93, 135, 352, 530, 559
AxyI	CCTNAGG	1 cut(s)	471
BanII	GRGCYC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	115
BcnI	CCSGG	2 cut(s)	139, 140
BfaI	CTAG	1 cut(s)	549
Bme1390I	CCNGG	3 cut(s)	115, 139, 140
Bme18I	GGWCC	5 cut(s)	93, 135, 352, 530, 559
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	7 cut(s)	51, 93, 135, 221, 352, 530, 559
BmiI	GGNNCC	3 cut(s)	95, 104, 137
BmrFI	CCNGG	3 cut(s)	115, 139, 140
BpmI	CTGGAG	1 cut(s)	426
BpuMI	CCSGG	2 cut(s)	139, 140
BsaJI	CCNNGG	5 cut(s)	97, 113, 138, 139, 348
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	409
Bse21I	CCTNAGG	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	5 cut(s)	97, 113, 138, 139, 348
BseGI	GGATG	2 cut(s)	418, 603
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	198, 462
BseNI	ACTGG	1 cut(s)	409
BsgI	GTGCAG	1 cut(s)	28
Bsh1236I	CGCG	2 cut(s)	99, 194
BshFI	GGCC	3 cut(s)	52, 222, 236
BsiHKAI	GWGCWC	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	114
BsnI	GGCC	3 cut(s)	52, 222, 236
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp1407I	TGTACA	1 cut(s)	570
Bsp143I	GATC	1 cut(s)	592
BspACI	CCGC	6 cut(s)	27, 75, 81, 97, 99, 224
BspANI	GGCC	3 cut(s)	52, 222, 236
BspCNI	CTCAG	2 cut(s)	199, 463
BspFNI	CGCG	2 cut(s)	99, 194
BspLI	GGNNCC	3 cut(s)	95, 104, 137
BsrBI	CCGCTC	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	570
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	5 cut(s)	97, 113, 138, 139, 348
BssMI	GATC	1 cut(s)	592
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	2 cut(s)	316, 379
Bst6I	CTCTTC	1 cut(s)	580
BstAUI	TGTACA	1 cut(s)	570
BstC8I	GCNNGC	4 cut(s)	7, 224, 345, 426
BstDEI	CTNAG	2 cut(s)	207, 471
BstDSI	CCRYGG	1 cut(s)	97
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	418, 603
BstFNI	CGCG	2 cut(s)	99, 194
BstKTI	GATC	1 cut(s)	595
BstMBI	GATC	1 cut(s)	592
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNI	CCWGG	1 cut(s)	115
BstSCI	CCNGG	3 cut(s)	113, 137, 138
BstUI	CGCG	2 cut(s)	99, 194
BstXI	CCANNNNNNTGG	1 cut(s)	298
Bsu36I	CCTNAGG	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	52, 222, 236
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	418, 603
Cac8I	GCNNGC	4 cut(s)	7, 224, 345, 426
Cfr13I	GGNCC	7 cut(s)	51, 93, 135, 221, 352, 530, 559
Cfr42I	CCGCGG	1 cut(s)	100
Cfr9I	CCCGGG	1 cut(s)	138
CseI	GACGC	2 cut(s)	172, 183
Csp6I	GTAC	3 cut(s)	312, 370, 571
CviAII	CATG	2 cut(s)	479, 580
CviJI	RGCY	8 cut(s)	52, 72, 118, 222, 236, 343, 428, 566
CviKI_1	RGCY	8 cut(s)	52, 72, 118, 222, 236, 343, 428, 566
CviQI	GTAC	3 cut(s)	312, 370, 571
DdeI	CTNAG	2 cut(s)	207, 471
DpnI	GATC	1 cut(s)	594
DpnII	GATC	1 cut(s)	592
Eam1104I	CTCTTC	1 cut(s)	580
EarI	CTCTTC	1 cut(s)	580
EciI	GGCGGA	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	74
Eco47I	GGWCC	5 cut(s)	93, 135, 352, 530, 559
Eco53kI	GAGCTC	1 cut(s)	72
Eco81I	CCTNAGG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	72
EcoNI	CCTNNNNNAGG	1 cut(s)	112
EcoO109I	RGGNCCY	2 cut(s)	93, 135
EcoRII	CCWGG	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	2 cut(s)	482, 583
FaiI	YATR	4 cut(s)	431, 480, 513, 581
FatI	CATG	2 cut(s)	478, 579
FauI	CCCGC	3 cut(s)	92, 104, 231
FokI	GGATG	2 cut(s)	425, 610
FriOI	GRGCYC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	549
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	3 cut(s)	52, 222, 236
HapII	CCGG	1 cut(s)	139
HgaI	GACGC	2 cut(s)	172, 183
Hin1II	CATG	2 cut(s)	482, 583
HinfI	GANTC	2 cut(s)	326, 446
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	2 cut(s)	313, 328
Hpy166II	GTNNAC	4 cut(s)	390, 523, 554, 571
Hpy188I	TCNGA	4 cut(s)	69, 208, 256, 597
Hpy188III	TCNNGA	3 cut(s)	91, 133, 470
Hpy8I	GTNNAC	4 cut(s)	390, 523, 554, 571
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	3 cut(s)	266, 352, 484
HpyCH4III	ACNGT	2 cut(s)	316, 379
HpyCH4V	TGCA	2 cut(s)	9, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	2 cut(s)	207, 471
Hsp92II	CATG	2 cut(s)	482, 583
KspI	CCGCGG	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	592
LmnI	GCTCC	3 cut(s)	69, 77, 182
MaeI	CTAG	1 cut(s)	549
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	1 cut(s)	594
MbiI	CCGCTC	1 cut(s)	29
MboI	GATC	1 cut(s)	592
MboII	GAAGA	1 cut(s)	597
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	3 cut(s)	249, 364, 453
MluI	ACGCGT	1 cut(s)	192
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	3 cut(s)	115, 139, 140
MvaI	CCWGG	1 cut(s)	115
MvnI	CGCG	2 cut(s)	99, 194
MwoI	GCNNNNNNNGC	1 cut(s)	124
NciI	CCSGG	2 cut(s)	139, 140
NdeII	GATC	1 cut(s)	592
NlaIII	CATG	2 cut(s)	482, 583
NlaIV	GGNNCC	3 cut(s)	95, 104, 137
NmuCI	GTSAC	1 cut(s)	316
OliI	CACNNNNGTG	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	326, 446
PpuMI	RGGWCCY	2 cut(s)	93, 135
Psp124BI	GAGCTC	1 cut(s)	74
Psp5II	RGGWCCY	2 cut(s)	93, 135
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	3 cut(s)	95, 104, 137
PspPI	GGNCC	7 cut(s)	51, 93, 135, 221, 352, 530, 559
PspPPI	RGGWCCY	2 cut(s)	93, 135
RsaI	GTAC	3 cut(s)	313, 371, 572
RsaNI	GTAC	3 cut(s)	312, 370, 571
RseI	CAYNNNNRTG	1 cut(s)	296
SacI	GAGCTC	1 cut(s)	74
SacII	CCGCGG	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	35
Sau3AI	GATC	1 cut(s)	592
Sau96I	GGNCC	7 cut(s)	51, 93, 135, 221, 352, 530, 559
ScrFI	CCNGG	3 cut(s)	115, 139, 140
SduI	GDGCHC	1 cut(s)	74
Sfr303I	CCGCGG	1 cut(s)	100
SgrBI	CCGCGG	1 cut(s)	100
SinI	GGWCC	5 cut(s)	93, 135, 352, 530, 559
SmaI	CCCGGG	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	296
Sse9I	AATT	3 cut(s)	249, 364, 453
SsiI	CCGC	6 cut(s)	27, 75, 81, 97, 99, 224
SspMI	CTAG	1 cut(s)	549
SstI	GAGCTC	1 cut(s)	74
StyD4I	CCNGG	3 cut(s)	113, 137, 138
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	316, 379
TaqI	TCGA	1 cut(s)	444
TasI	AATT	3 cut(s)	249, 364, 453
TatI	WGTACW	1 cut(s)	570
TfiI	GAWTC	2 cut(s)	326, 446
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	316
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	4 cut(s)	47, 75, 351, 614
TspGWI	ACGGA	3 cut(s)	175, 284, 439
TspMI	CCCGGG	1 cut(s)	138
VpaK11BI	GGWCC	5 cut(s)	93, 135, 352, 530, 559
XagI	CCTNNNNNAGG	1 cut(s)	112
XapI	RAATTY	1 cut(s)	364
XmaI	CCCGGG	1 cut(s)	138
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.