Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005463

Physical Location & Seq

Genomic Coordinates Reverse (-)

47493905 .. 47496723

Gene Structure 2819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG304500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCTTGCAGAACTGCCTTGCGCTCCGCTCTTCTAATAGAAGCGTGGCGACCCGTTCACCTCGCTCGGAGCTCCGTTTCCTCTTCGCTCCGAACCCGAAACGGATTCTCCTCCCCGCAGCTGACCCGCCAATTCAAGACCCGAGACGTCCACTTGGCCAAACGGACCCAACTCAGTTGCTCCCACAACGAAAACCAACCCGCTCTCTCCGAGGACGAACAAGGCCCGCCTCAGGAGGCCGTTCTCAAAGCTATTTCAGGTCTCGTTTTCACCCTTCTCATTACTTTTTACTTTCGTTTGTTAATTTTTTTTGATTGTAAATATGTTTTTAACTCGCTGTTAAAACTGGGTGTAGAGGTGTCTAGAACTGAAGGGAGGGTCGGGCAGACCACGAATGTGGTTATTGGAGGCACGGTGGCCGATGATTCCACCACTGAATGGCTCGACTTGGATCAGAAGGTAAATTCATACCCAACTGTTAGAGGGTTCACGGCGATTGGAACCGGAGGGGATGATTTTGTGCAGGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACAACCCGTTCCTGAGATAATATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF493

Protein Analysis

194

Amino Acids

21.42

Weight (kDa)

6.83

Isoelectric Point (pI)

54.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27385 AT1G27385 AT1G27385 AT1G27385
fragaria_vesca	FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720
malus_domestica	MD13G1119600.v1.1 MD16G1119800.v1.1
prunus_persica	Prupe.1G225400_v2.0.a1 Prupe.1G225400_v2.0.a1
pyrus_communis	pycom13g10420
rosa_chinensis	RchiOBHm_Chr4g0430191 RchiOBHm_Chr4g0430201
rosa_laevigata	RLG00000006994 RLG00000006995
rosa_multiflora	Rmu_sc0001089.1_g000005
rosa_roxburghii	Rroxscaffold_5G00372000
rosa_rugosa	Rorug04G0241500 Rorug04G0241600 Rorug04G0241600
rosa_samantha	Rh4AG298000 Rh4BG304500 Rh4CG319900 Rh4DG301900
rosa_wichuraiana	Rw4G025840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	438
AccBSI	CCGCTC	2 cut(s)	29, 203
AciI	CCGC	5 cut(s)	27, 116, 127, 201, 227
AclWI	GGATC	1 cut(s)	459
AcoI	YGGCCR	2 cut(s)	156, 417
AcsI	RAATTY	1 cut(s)	463
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	552
AfiI	CCNNNNNNNGG	2 cut(s)	232, 438
AgsI	TTSAA	3 cut(s)	136, 545, 557
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	3 cut(s)	72, 121, 251
AluI	AGCT	3 cut(s)	72, 121, 251
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	2 cut(s)	138, 266
AlwI	GGATC	1 cut(s)	459
Ama87I	CYCGRG	1 cut(s)	141
AoxI	GGCC	4 cut(s)	156, 223, 237, 417
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	165, 224
AsuHPI	GGTGA	2 cut(s)	50, 262
AvaI	CYCGRG	1 cut(s)	141
AvaII	GGWCC	1 cut(s)	165
AxyI	CCTNAGG	1 cut(s)	231
BalI	TGGCCA	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	130
BceAI	ACGGC	2 cut(s)	224, 507
BcoDI	GTCTC	2 cut(s)	138, 266
BfaI	CTAG	1 cut(s)	363
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	141
BmgT120I	GGNCC	2 cut(s)	165, 224
BmiI	GGNNCC	2 cut(s)	167, 502
BmrI	ACTGGG	1 cut(s)	356
BmuI	ACTGGG	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	503
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 399, 429
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 438
Bse1I	ACTGG	1 cut(s)	351
Bse21I	CCTNAGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	517
BseLI	CCNNNNNNNGG	2 cut(s)	232, 438
BseMII	CTCAG	3 cut(s)	187, 245, 561
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	130
BsgI	GTGCAG	1 cut(s)	542
BshFI	GGCC	4 cut(s)	158, 225, 239, 419
BsiHKAI	GWGCWC	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	504
BslI	CCNNNNNNNGG	2 cut(s)	232, 438
BsmAI	GTCTC	2 cut(s)	138, 266
BsmBI	CGTCTC	1 cut(s)	138
BsnI	GGCC	4 cut(s)	158, 225, 239, 419
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	451
BspACI	CCGC	5 cut(s)	27, 116, 127, 201, 227
BspANI	GGCC	4 cut(s)	158, 225, 239, 419
BspCNI	CTCAG	3 cut(s)	186, 244, 562
BspLI	GGNNCC	2 cut(s)	167, 502
BspPI	GGATC	1 cut(s)	459
BspQI	GCTCTTC	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	266
BsrBI	CCGCTC	2 cut(s)	29, 203
BsrI	ACTGG	1 cut(s)	351
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	451
BssNI	GRCGYC	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	415, 478
Bst6I	CTCTTC	2 cut(s)	36, 88
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	3 cut(s)	7, 227, 525
BstDEI	CTNAG	3 cut(s)	173, 231, 570
BstF5I	GGATG	1 cut(s)	517
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	1 cut(s)	454
BstMAI	GTCTC	2 cut(s)	138, 266
BstMBI	GATC	1 cut(s)	451
BstV1I	GCAGC	1 cut(s)	130
BstXI	CCANNNNNNTGG	1 cut(s)	397
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	4 cut(s)	158, 225, 239, 419
BtsCI	GGATG	1 cut(s)	517
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	3 cut(s)	7, 227, 525
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	165, 224
Csp6I	GTAC	1 cut(s)	551
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	3 cut(s)	173, 231, 570
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
EaeI	YGGCCR	2 cut(s)	156, 417
Eam1104I	CTCTTC	2 cut(s)	36, 88
EarI	CTCTTC	2 cut(s)	36, 88
Ecl136II	GAGCTC	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	390
Eco81I	CCTNAGG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	74
Esp3I	CGTCTC	1 cut(s)	138
FaiI	YATR	4 cut(s)	324, 469, 530, 583
FauI	CCCGC	4 cut(s)	123, 134, 208, 234
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	1 cut(s)	524
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	1 cut(s)	119
HaeIII	GGCC	4 cut(s)	158, 225, 239, 419
HapII	CCGG	1 cut(s)	504
HhaI	GCGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	3 cut(s)	105, 425, 545
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	2 cut(s)	50, 262
Hpy166II	GTNNAC	3 cut(s)	58, 151, 489
Hpy188I	TCNGA	4 cut(s)	69, 92, 211, 456
Hpy188III	TCNNGA	4 cut(s)	136, 233, 363, 569
Hpy8I	GTNNAC	3 cut(s)	58, 151, 489
HpyAV	CCTTC	3 cut(s)	284, 365, 451
HpyCH4III	ACNGT	2 cut(s)	415, 478
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	9, 523
HpyF3I	CTNAG	3 cut(s)	173, 231, 570
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	147
HspAI	GCGC	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	451
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	5 cut(s)	29, 69, 77, 93, 185
LpnPI	CCDG	5 cut(s)	218, 243, 332, 509, 517
Lsp1109I	GCAGC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	147
MalI	GATC	1 cut(s)	453
MbiI	CCGCTC	2 cut(s)	29, 203
MboI	GATC	1 cut(s)	451
MboII	GAAGA	2 cut(s)	23, 75
MhlI	GDGCHC	1 cut(s)	74
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	3 cut(s)	131, 303, 463
MluNI	TGGCCA	1 cut(s)	158
Mox20I	TGGCCA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	3 cut(s)	302, 330, 341
MslI	CAYNNNNRTG	1 cut(s)	395
Msp20I	TGGCCA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	1 cut(s)	504
NdeII	GATC	1 cut(s)	451
NlaIV	GGNNCC	2 cut(s)	167, 502
OliI	CACNNNNGTG	1 cut(s)	395
PciSI	GCTCTTC	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	105, 425, 545
PflMI	CCANNNNNTGG	1 cut(s)	438
PkrI	GCNGC	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	167, 502
PspPI	GGNCC	2 cut(s)	165, 224
PvuII	CAGCTG	1 cut(s)	121
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
RseI	CAYNNNNRTG	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	3 cut(s)	302, 330, 341
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	1 cut(s)	451
Sau96I	GGNCC	2 cut(s)	165, 224
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	8 cut(s)	63, 74, 123, 150, 253, 262, 360, 462
SinI	GGWCC	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	3 cut(s)	131, 303, 463
SsiI	CCGC	5 cut(s)	27, 116, 127, 201, 227
SspI	AATATT	1 cut(s)	579
SspMI	CTAG	1 cut(s)	363
SstI	GAGCTC	1 cut(s)	74
TaaI	ACNGT	2 cut(s)	415, 478
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	444
TasI	AATT	3 cut(s)	131, 303, 463
TatI	WGTACW	1 cut(s)	550
TfiI	GAWTC	3 cut(s)	105, 425, 545
Tru1I	TTAA	3 cut(s)	302, 330, 341
Tru9I	TTAA	3 cut(s)	302, 330, 341
TscAI	CASTG	1 cut(s)	439
TseI	GCWGC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	456
TspGWI	ACGGA	3 cut(s)	64, 117, 178
TspRI	CASTG	1 cut(s)	439
Van91I	CCANNNNNTGG	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	165
XapI	RAATTY	1 cut(s)	463
XbaI	TCTAGA	1 cut(s)	362
XspI	CTAG	1 cut(s)	363
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.