Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001089.1

Orthogroup ID

OG0005463

Physical Location & Seq

Genomic Coordinates Reverse (-)

9919 .. 12047

Gene Structure 2129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001089.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atggcttgtagaactgccttgcgctccgctcttctaatagaagcgtggcgacccgttcacctcgctcggagctccgtttccggttccctccgaacccgaaacggattctcctccccgcagctgacccgccaattcaagaaccgagacgtccacttggccaaacggacccaactcagttgctcccacaacgaaaaccaacccgctctctccgaggacgaacaaggcccgcctcaggaggccgttctcaaagctatttcagaggtgtctagaactgaagggagggtcgggcagaccacgaatgtggttattggcggcacggtggccgatgattccaccactgaatggctggacttggatcagaaggtaaattcatacccaactgttagagggttcacggcgattggaaccggaggggatgattttgtgcaggctatggttgttgctgttgaatccgtacttcaacaacccgttcctgagggtcgtgtcaagcagaagctatcatcaggaggcaaatatgtatctgtaaacattggtcctgttcaagtcatttctagcgaacaggtccaagctgtatacaatgcaatgagaagagatgaccggatgaaatactttttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF493

Protein Analysis

205

Amino Acids

22.46

Weight (kDa)

8.97

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27385 AT1G27385 AT1G27385 AT1G27385
fragaria_vesca	FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720
malus_domestica	MD13G1119600.v1.1 MD16G1119800.v1.1
prunus_persica	Prupe.1G225400_v2.0.a1 Prupe.1G225400_v2.0.a1
pyrus_communis	pycom13g10420
rosa_chinensis	RchiOBHm_Chr4g0430191 RchiOBHm_Chr4g0430201
rosa_laevigata	RLG00000006994 RLG00000006995
rosa_multiflora	Rmu_sc0001089.1_g000005
rosa_roxburghii	Rroxscaffold_5G00372000
rosa_rugosa	Rorug04G0241500 Rorug04G0241600 Rorug04G0241600
rosa_samantha	Rh4AG298000 Rh4BG304500 Rh4CG319900 Rh4DG301900
rosa_wichuraiana	Rw4G025840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	342
AccBSI	CCGCTC	2 cut(s)	29, 203
AccI	GTMKAC	1 cut(s)	573
AciI	CCGC	6 cut(s)	27, 116, 127, 201, 227, 312
AclWI	GGATC	1 cut(s)	363
AcoI	YGGCCR	2 cut(s)	156, 321
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	456
AfiI	CCNNNNNNNGG	2 cut(s)	232, 342
AgsI	TTSAA	4 cut(s)	136, 449, 461, 542
AleI	CACNNNNGTG	1 cut(s)	299
AluBI	AGCT	5 cut(s)	72, 121, 251, 496, 569
AluI	AGCT	5 cut(s)	72, 121, 251, 496, 569
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	363
AoxI	GGCC	4 cut(s)	156, 223, 237, 321
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	367
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	4 cut(s)	165, 224, 533, 562
AsuHPI	GGTGA	1 cut(s)	50
AvaII	GGWCC	3 cut(s)	165, 533, 562
AxyI	CCTNAGG	2 cut(s)	231, 474
BalI	TGGCCA	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	130
BceAI	ACGGC	2 cut(s)	224, 411
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	2 cut(s)	267, 552
BisI	GCNGC	2 cut(s)	119, 313
BlsI	GCNGC	2 cut(s)	120, 314
Bme18I	GGWCC	3 cut(s)	165, 533, 562
BmgT120I	GGNCC	4 cut(s)	165, 224, 533, 562
BmiI	GGNNCC	3 cut(s)	85, 167, 406
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	3 cut(s)	80, 407, 597
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 342
Bse21I	CCTNAGG	2 cut(s)	231, 474
Bse3DI	GCAATG	1 cut(s)	588
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	421, 606
BseLI	CCNNNNNNNGG	2 cut(s)	232, 342
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	3 cut(s)	187, 245, 465
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	130
BsgI	GTGCAG	1 cut(s)	446
BshFI	GGCC	4 cut(s)	158, 225, 239, 323
BsiHKAI	GWGCWC	1 cut(s)	74
BsiSI	CCGG	3 cut(s)	81, 408, 598
BslI	CCNNNNNNNGG	2 cut(s)	232, 342
BsmAI	GTCTC	1 cut(s)	138
BsmBI	CGTCTC	1 cut(s)	138
BsnI	GGCC	4 cut(s)	158, 225, 239, 323
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	6 cut(s)	27, 116, 127, 201, 227, 312
BspANI	GGCC	4 cut(s)	158, 225, 239, 323
BspCNI	CTCAG	3 cut(s)	186, 244, 466
BspLI	GGNNCC	3 cut(s)	85, 167, 406
BspPI	GGATC	1 cut(s)	363
BspQI	GCTCTTC	1 cut(s)	36
BsrBI	CCGCTC	2 cut(s)	29, 203
BsrDI	GCAATG	1 cut(s)	588
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	355
BssNAI	GTATAC	1 cut(s)	574
BssNI	GRCGYC	1 cut(s)	147
Bst1107I	GTATAC	1 cut(s)	574
Bst4CI	ACNGT	2 cut(s)	319, 382
Bst6I	CTCTTC	2 cut(s)	36, 583
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	227, 429
BstDEI	CTNAG	3 cut(s)	173, 231, 474
BstF5I	GGATG	2 cut(s)	421, 606
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	130
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstZ17I	GTATAC	1 cut(s)	574
Bsu36I	CCTNAGG	2 cut(s)	231, 474
BsuRI	GGCC	4 cut(s)	158, 225, 239, 323
BtsCI	GGATG	2 cut(s)	421, 606
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	2 cut(s)	227, 429
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	4 cut(s)	165, 224, 533, 562
Csp6I	GTAC	1 cut(s)	455
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	3 cut(s)	173, 231, 474
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
EaeI	YGGCCR	2 cut(s)	156, 321
Eam1104I	CTCTTC	2 cut(s)	36, 583
EarI	CTCTTC	2 cut(s)	36, 583
Ecl136II	GAGCTC	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	74
Eco47I	GGWCC	3 cut(s)	165, 533, 562
Eco53kI	GAGCTC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	294
Eco81I	CCTNAGG	2 cut(s)	231, 474
EcoICRI	GAGCTC	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	74
Esp3I	CGTCTC	1 cut(s)	138
FaiI	YATR	4 cut(s)	373, 434, 516, 574
FauI	CCCGC	4 cut(s)	123, 134, 208, 234
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	2 cut(s)	119, 313
FokI	GGATG	2 cut(s)	428, 613
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	2 cut(s)	119, 313
FspBI	CTAG	2 cut(s)	267, 552
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	2 cut(s)	119, 313
HaeIII	GGCC	4 cut(s)	158, 225, 239, 323
HapII	CCGG	3 cut(s)	81, 408, 598
HhaI	GCGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	3 cut(s)	105, 329, 449
HpaII	CCGG	3 cut(s)	81, 408, 598
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	5 cut(s)	58, 151, 393, 526, 574
Hpy188I	TCNGA	5 cut(s)	69, 92, 211, 259, 360
Hpy188III	TCNNGA	5 cut(s)	136, 233, 267, 473, 504
Hpy8I	GTNNAC	5 cut(s)	58, 151, 393, 526, 574
HpyAV	CCTTC	2 cut(s)	269, 355
HpyCH4III	ACNGT	2 cut(s)	319, 382
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	427, 581
HpyF3I	CTNAG	3 cut(s)	173, 231, 474
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	147
HspAI	GCGC	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	355
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	4 cut(s)	29, 69, 77, 185
Lsp1109I	GCAGC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	267, 552
MaeII	ACGT	1 cut(s)	147
MalI	GATC	1 cut(s)	357
MbiI	CCGCTC	2 cut(s)	29, 203
MboI	GATC	1 cut(s)	355
MboII	GAAGA	2 cut(s)	23, 600
MhlI	GDGCHC	1 cut(s)	74
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	2 cut(s)	131, 367
MluNI	TGGCCA	1 cut(s)	158
Mox20I	TGGCCA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	299
Msp20I	TGGCCA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	3 cut(s)	81, 408, 598
NdeII	GATC	1 cut(s)	355
NlaIV	GGNNCC	3 cut(s)	85, 167, 406
OliI	CACNNNNGTG	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	105, 329, 449
PflMI	CCANNNNNTGG	1 cut(s)	342
PkrI	GCNGC	2 cut(s)	120, 314
Psp124BI	GAGCTC	1 cut(s)	74
PspN4I	GGNNCC	3 cut(s)	85, 167, 406
PspPI	GGNCC	4 cut(s)	165, 224, 533, 562
PvuII	CAGCTG	1 cut(s)	121
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
RseI	CAYNNNNRTG	1 cut(s)	299
SacI	GAGCTC	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	36
SatI	GCNGC	2 cut(s)	119, 313
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	4 cut(s)	165, 224, 533, 562
SduI	GDGCHC	1 cut(s)	74
SinI	GGWCC	3 cut(s)	165, 533, 562
SmiMI	CAYNNNNRTG	1 cut(s)	299
Sse9I	AATT	2 cut(s)	131, 367
SsiI	CCGC	6 cut(s)	27, 116, 127, 201, 227, 312
SspMI	CTAG	2 cut(s)	267, 552
SstI	GAGCTC	1 cut(s)	74
TaaI	ACNGT	2 cut(s)	319, 382
TaiI	ACGT	1 cut(s)	150
TasI	AATT	2 cut(s)	131, 367
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	3 cut(s)	105, 329, 449
TscAI	CASTG	1 cut(s)	343
TseI	GCWGC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	360, 617
TspGWI	ACGGA	4 cut(s)	64, 117, 178, 442
TspRI	CASTG	1 cut(s)	343
Van91I	CCANNNNNTGG	1 cut(s)	342
VpaK11BI	GGWCC	3 cut(s)	165, 533, 562
XapI	RAATTY	1 cut(s)	367
XbaI	TCTAGA	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	573
XspI	CTAG	2 cut(s)	267, 552
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.