Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005463

Physical Location & Seq

Genomic Coordinates Reverse (-)

52362836 .. 52365655

Gene Structure 2820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG301900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCTTGTAGAACTGCCTTGCGCTCCGCTCTTCTAATAGAAGCGTGGCGACCCGTTCACCTCGCTCGGAGCTCCGTTTCCGGTTCGCTCCGAACCCGAAACGGATTCTCCTCCCCGCAGCTGACCCGCCAATTCAAGACCCGAGACGTCCACTTGACCAAACGGACCCAACTCAGTTGCTCCCACAACGAAAACCAACCCGCTCTCTCCGAGGACGAACAAGGCCCGCCTCAGGAGGCCGTTCTCAAAGCTATTTCAGGTCTCGTTTTCACCCTTCTCATTACTTTTTACTTTCCGTTTGTTAATTTTTTTGATTGTAAATATGTTTTTAACTCGCTGTTAAAACTGGGTGTAGAGGTGTCTAGAACTGAAGGGAGGGTCGGGCAGACCACGAATGTGGTTATTGGAGGCACGGTGGCCGATGATTCCACCACTGAATGGCTCGACTTGGATCAGAAGGTGTTTGAAGCCATTCCTTGTTTCTTGTTTATTTTGCATATTAAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF493

Protein Analysis

169

Amino Acids

18.91

Weight (kDa)

8.41

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27385 AT1G27385 AT1G27385 AT1G27385
fragaria_vesca	FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720 FvH4_4g23720
malus_domestica	MD13G1119600.v1.1 MD16G1119800.v1.1
prunus_persica	Prupe.1G225400_v2.0.a1 Prupe.1G225400_v2.0.a1
pyrus_communis	pycom13g10420
rosa_chinensis	RchiOBHm_Chr4g0430191 RchiOBHm_Chr4g0430201
rosa_laevigata	RLG00000006994 RLG00000006995
rosa_multiflora	Rmu_sc0001089.1_g000005
rosa_roxburghii	Rroxscaffold_5G00372000
rosa_rugosa	Rorug04G0241500 Rorug04G0241600 Rorug04G0241600
rosa_samantha	Rh4AG298000 Rh4BG304500 Rh4CG319900 Rh4DG301900
rosa_wichuraiana	Rw4G025840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	438
AccBSI	CCGCTC	2 cut(s)	29, 203
AciI	CCGC	5 cut(s)	27, 116, 127, 201, 227
AclWI	GGATC	1 cut(s)	459
AcoI	YGGCCR	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	232, 438
AgsI	TTSAA	2 cut(s)	136, 467
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	3 cut(s)	72, 121, 251
AluI	AGCT	3 cut(s)	72, 121, 251
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	2 cut(s)	138, 266
AlwI	GGATC	1 cut(s)	459
Ama87I	CYCGRG	1 cut(s)	141
AoxI	GGCC	3 cut(s)	223, 237, 417
ApeKI	GCWGC	1 cut(s)	118
Asp700I	GAANNNNTTC	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	165, 224
AsuHPI	GGTGA	2 cut(s)	50, 262
AvaI	CYCGRG	1 cut(s)	141
AvaII	GGWCC	1 cut(s)	165
AxyI	CCTNAGG	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	130
BceAI	ACGGC	1 cut(s)	224
BcoDI	GTCTC	2 cut(s)	138, 266
BfaI	CTAG	1 cut(s)	363
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	141
BmgT120I	GGNCC	2 cut(s)	165, 224
BmiI	GGNNCC	1 cut(s)	167
BmrI	ACTGGG	1 cut(s)	356
BmuI	ACTGGG	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	80
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 399, 429
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 438
Bse1I	ACTGG	1 cut(s)	351
Bse21I	CCTNAGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	232, 438
BseMII	CTCAG	2 cut(s)	187, 245
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	130
BshFI	GGCC	3 cut(s)	225, 239, 419
BsiHKAI	GWGCWC	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	232, 438
BsmAI	GTCTC	2 cut(s)	138, 266
BsmBI	CGTCTC	1 cut(s)	138
BsnI	GGCC	3 cut(s)	225, 239, 419
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	451
BspACI	CCGC	5 cut(s)	27, 116, 127, 201, 227
BspANI	GGCC	3 cut(s)	225, 239, 419
BspCNI	CTCAG	2 cut(s)	186, 244
BspLI	GGNNCC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	459
BspQI	GCTCTTC	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	266
BsrBI	CCGCTC	2 cut(s)	29, 203
BsrI	ACTGG	1 cut(s)	351
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	451
BssNI	GRCGYC	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	2 cut(s)	173, 231
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	1 cut(s)	454
BstMAI	GTCTC	2 cut(s)	138, 266
BstMBI	GATC	1 cut(s)	451
BstV1I	GCAGC	1 cut(s)	130
BstXI	CCANNNNNNTGG	1 cut(s)	397
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	3 cut(s)	225, 239, 419
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	227
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	165, 224
CviJI	RGCY	9 cut(s)	5, 72, 121, 225, 239, 251, 419, 442, 470
CviKI_1	RGCY	9 cut(s)	5, 72, 121, 225, 239, 251, 419, 442, 470
DdeI	CTNAG	2 cut(s)	173, 231
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	390
Eco81I	CCTNAGG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	74
Esp3I	CGTCTC	1 cut(s)	138
FaiI	YATR	2 cut(s)	324, 498
FauI	CCCGC	4 cut(s)	123, 134, 208, 234
Fnu4HI	GCNGC	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	1 cut(s)	119
HaeIII	GGCC	3 cut(s)	225, 239, 419
HapII	CCGG	1 cut(s)	81
HhaI	GCGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	105, 425
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	2 cut(s)	50, 262
Hpy166II	GTNNAC	2 cut(s)	58, 151
Hpy188I	TCNGA	4 cut(s)	69, 92, 211, 456
Hpy188III	TCNNGA	3 cut(s)	136, 233, 363
Hpy8I	GTNNAC	2 cut(s)	58, 151
HpyAV	CCTTC	3 cut(s)	284, 365, 451
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	496
HpyF3I	CTNAG	2 cut(s)	173, 231
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	147
HspAI	GCGC	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	451
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	5 cut(s)	29, 69, 77, 93, 185
LpnPI	CCDG	4 cut(s)	94, 218, 243, 332
Lsp1109I	GCAGC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	147
MalI	GATC	1 cut(s)	453
MbiI	CCGCTC	2 cut(s)	29, 203
MboI	GATC	1 cut(s)	451
MboII	GAAGA	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	2 cut(s)	131, 304
MnlI	CCTC	8 cut(s)	71, 121, 205, 229, 240, 349, 369, 401
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	5 cut(s)	303, 330, 341, 501, 508
MslI	CAYNNNNRTG	1 cut(s)	395
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	1 cut(s)	81
NdeII	GATC	1 cut(s)	451
NlaIV	GGNNCC	1 cut(s)	167
OliI	CACNNNNGTG	1 cut(s)	395
PciSI	GCTCTTC	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	105, 425
PflMI	CCANNNNNTGG	1 cut(s)	438
PkrI	GCNGC	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	2 cut(s)	165, 224
PvuII	CAGCTG	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	5 cut(s)	303, 330, 341, 501, 508
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	1 cut(s)	451
Sau96I	GGNCC	2 cut(s)	165, 224
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	8 cut(s)	63, 74, 123, 150, 253, 262, 360, 462
SinI	GGWCC	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	2 cut(s)	131, 304
SsiI	CCGC	5 cut(s)	27, 116, 127, 201, 227
SspMI	CTAG	1 cut(s)	363
SstI	GAGCTC	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	444
TasI	AATT	2 cut(s)	131, 304
TfiI	GAWTC	2 cut(s)	105, 425
Tru1I	TTAA	5 cut(s)	303, 330, 341, 501, 508
Tru9I	TTAA	5 cut(s)	303, 330, 341, 501, 508
TscAI	CASTG	1 cut(s)	439
TseI	GCWGC	1 cut(s)	118
TspGWI	ACGGA	4 cut(s)	64, 117, 178, 285
TspRI	CASTG	1 cut(s)	439
Van91I	CCANNNNNTGG	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	165
XbaI	TCTAGA	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	1 cut(s)	363
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.