RchiOBHm_Chr4g0430191

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005463
Physical Location & Seq
Reverse (-)
54783719 .. 54784520
802 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39893

Sequence Viewer

Length: 297 bp
ATGAGCAAGAGCGAAAGAAACTGCCGAGAAGACTTTCTCACACAGATGATGATACTTCCACCAACACTCATCATCGTCATCAGAATCTCAACATCAACCCAGCAGATGATCTCGGCGGCGAAGAAGAAGCTGCCATGCTGGCAAGAGTGCGATCTGAGCTTCACCAGAGAGGATTCGACGAGTTGGTCCACGGTGCTGCACCCCATGGTCACCCAGATGGTACGGTTTTATTTTAGACTTGATTATATCAAGTTACAAAATGGTGTCAAGGCCCAGACCCAGATCGATGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.51

Weight (kDa)

7.71

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 184
AciI CCGC 1 cut(s) 116
AfaI GTAC 1 cut(s) 222
AluBI AGCT 2 cut(s) 130, 159
AluI AGCT 2 cut(s) 130, 159
AoxI GGCC 1 cut(s) 270
ApeKI GCWGC 2 cut(s) 130, 196
Asp700I GAANNNNTTC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 186, 271
AsuHPI GGTGA 2 cut(s) 154, 202
AvaII GGWCC 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 2 cut(s) 117, 183
BccI CCATC 1 cut(s) 211
BglI GCCNNNNNGGC 1 cut(s) 139
BisI GCNGC 3 cut(s) 117, 131, 197
BlsI GCNGC 3 cut(s) 118, 132, 198
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 2 cut(s) 186, 271
BpiI GAAGAC 1 cut(s) 36
Bsa29I ATCGAT 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 189, 204
BseCI ATCGAT 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 189, 204
BseMII CTCAG 1 cut(s) 146
BseXI GCAGC 2 cut(s) 117, 183
BseYI CCCAGC 1 cut(s) 99
BsgI GTGCAG 1 cut(s) 182
BshFI GGCC 1 cut(s) 272
BshVI ATCGAT 1 cut(s) 285
BsnI GGCC 1 cut(s) 272
Bsp143I GATC 3 cut(s) 108, 151, 282
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 1 cut(s) 116
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 1 cut(s) 147
BspDI ATCGAT 1 cut(s) 285
BssECI CCNNGG 2 cut(s) 189, 204
BssMI GATC 3 cut(s) 108, 151, 282
BssT1I CCWWGG 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 193, 225
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 155
BstDSI CCRYGG 2 cut(s) 189, 204
BstEII GGTNACC 1 cut(s) 208
BstKTI GATC 3 cut(s) 111, 154, 285
BstMBI GATC 3 cut(s) 108, 151, 282
BstMWI GCNNNNNNNGC 2 cut(s) 139, 156
BstPI GGTNACC 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 117, 183
BstV2I GAAGAC 1 cut(s) 36
Bsu15I ATCGAT 1 cut(s) 285
BsuRI GGCC 1 cut(s) 272
BsuTUI ATCGAT 1 cut(s) 285
BtgI CCRYGG 2 cut(s) 189, 204
Cac8I GCNNGC 1 cut(s) 140
Cfr13I GGNCC 2 cut(s) 186, 271
ClaI ATCGAT 1 cut(s) 285
Csp6I GTAC 1 cut(s) 221
CviAII CATG 2 cut(s) 135, 205
CviJI RGCY 3 cut(s) 130, 159, 272
CviKI_1 RGCY 3 cut(s) 130, 159, 272
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 1 cut(s) 155
DpnI GATC 3 cut(s) 110, 153, 284
DpnII GATC 3 cut(s) 108, 151, 282
DrdI GACNNNNNNGTC 1 cut(s) 184
DseDI GACNNNNNNGTC 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 186
Eco91I GGTNACC 1 cut(s) 208
EcoO65I GGTNACC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 2 cut(s) 138, 208
FaiI YATR 3 cut(s) 136, 206, 246
FatI CATG 2 cut(s) 134, 204
Fnu4HI GCNGC 3 cut(s) 117, 131, 197
Fsp4HI GCNGC 3 cut(s) 117, 131, 197
GluI GCNGC 3 cut(s) 117, 131, 197
GsaI CCCAGC 1 cut(s) 103
HaeIII GGCC 1 cut(s) 272
Hin1II CATG 2 cut(s) 138, 208
HinfI GANTC 2 cut(s) 84, 173
HphI GGTGA 2 cut(s) 154, 202
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 2 cut(s) 83, 156
Hpy8I GTNNAC 1 cut(s) 189
Hpy99I CGWCG 1 cut(s) 181
HpyCH4III ACNGT 2 cut(s) 193, 225
HpyCH4V TGCA 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 156
HpyF3I CTNAG 1 cut(s) 155
Hsp92II CATG 2 cut(s) 138, 208
Kzo9I GATC 3 cut(s) 108, 151, 282
LpnPI CCDG 6 cut(s) 113, 124, 178, 227, 287, 293
Lsp1109I GCAGC 2 cut(s) 117, 183
MaeIII GTNAC 2 cut(s) 208, 252
MalI GATC 3 cut(s) 110, 153, 284
MboI GATC 3 cut(s) 108, 151, 282
MboII GAAGA 3 cut(s) 41, 133, 136
MnlI CCTC 2 cut(s) 163, 283
MroXI GAANNNNTTC 1 cut(s) 33
MslI CAYNNNNRTG 2 cut(s) 44, 215
MwoI GCNNNNNNNGC 2 cut(s) 139, 156
NcoI CCATGG 1 cut(s) 204
NdeII GATC 3 cut(s) 108, 151, 282
NlaIII CATG 2 cut(s) 138, 208
NmeAIII GCCGAG 2 cut(s) 50, 92
NmuCI GTSAC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 2 cut(s) 84, 173
PkrI GCNGC 3 cut(s) 118, 132, 198
PspEI GGTNACC 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 99
PspPI GGNCC 2 cut(s) 186, 271
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
RseI CAYNNNNRTG 2 cut(s) 44, 215
SatI GCNGC 3 cut(s) 117, 131, 197
Sau3AI GATC 3 cut(s) 108, 151, 282
Sau96I GGNCC 2 cut(s) 186, 271
SetI ASST 2 cut(s) 132, 161
SinI GGWCC 1 cut(s) 186
SmiMI CAYNNNNRTG 2 cut(s) 44, 215
SsiI CCGC 1 cut(s) 116
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 193, 225
TaqI TCGA 2 cut(s) 176, 285
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 2 cut(s) 84, 173
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 2 cut(s) 130, 196
Tsp45I GTSAC 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 186
XmnI GAANNNNTTC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.