Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008569

Physical Location & Seq

Genomic Coordinates Forward (+)

29940472 .. 29942756

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAAGGTGGTGGTGGTGGTGGTGGTGGTGGCAGTAAACCAAGAGAAGAAGAACAAGACGGCATGTCCGTACACTCTCCCTGCAAGGCTCCTCCTTCCTCTGCTTCTTCCCTCCCCAAGGAGCAATCCCAGGTTGAATTGGAGCTCAGACTGTTGGAAGCTCTTGAAATTTATCCTCCAGTTAAATTGCAAGGCATACATCGTCACTTTGTGCTTTATGGGCTAATGGAGTTCCTGAGGAGAAGCTTTGATCGGAACTTCTCTTCTGATGAGGTTCTCCAATTGCTGGATCGGTTCTATAACTTGGAAATGCTGAAACCAGACGAGGAGGAATTGGACATCTTGAATCATGAGGAAGACTTTTGCTTGCCTCAAAGTTTCTTTGTCAAGGAGGAACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Eaf7

Protein Analysis

134

Amino Acids

15.08

Weight (kDa)

4.75

Isoelectric Point (pI)

86.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26470
fragaria_vesca	FvH4_4g30180
malus_domestica	MD02G1257200.v1.1 MD13G1063500.v1.1 MD16G1062000.v1.1
prunus_persica	Prupe.1G285900_v2.0.a1
pyrus_communis	pycom02g21790 pycom13g05610 pycom16g05420
rosa_chinensis	RchiOBHm_Chr4g0438511
rosa_laevigata	RLG00000006357
rosa_multiflora	Rmu_sc0002327.1_g000011 Rmu_sc0004398.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379520
rosa_rugosa	Rorug04G0310500 Rorug04G0310600 Rorug04G0310700 Rorug04G0310800 Rorug04G0310900 Rorug04G0311000
rosa_samantha	Rh4BG372600
rosa_wichuraiana	Rw0G006610 Rw0G016560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	286
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	168
AdeI	CACNNNGTG	1 cut(s)	211
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	118, 286
AgsI	TTSAA	3 cut(s)	137, 167, 346
AhdI	GACNNNNNGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	3 cut(s)	145, 161, 246
AluI	AGCT	3 cut(s)	145, 161, 246
Alw21I	GWGCWC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	297
ApoI	RAATTY	1 cut(s)	168
AxyI	CCTNAGG	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	147
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	131
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	90, 396
BmrFI	CCNGG	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	363
BpmI	CTGGAG	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	117, 129
BsaXI	ACNNNNNCTCC	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 286
Bse1I	ACTGG	1 cut(s)	179
Bse21I	CCTNAGG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	2 cut(s)	117, 129
BseLI	CCNNNNNNNGG	2 cut(s)	118, 286
BseMII	CTCAG	2 cut(s)	160, 227
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	3 cut(s)	81, 253, 341
BsiHKAI	GWGCWC	1 cut(s)	147
BslI	CCNNNNNNNGG	2 cut(s)	118, 286
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	250, 289
BspCNI	CTCAG	2 cut(s)	159, 228
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	2 cut(s)	90, 396
BspPI	GGATC	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	117, 129
BssMI	GATC	2 cut(s)	250, 289
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	2 cut(s)	153, 399
Bst6I	CTCTTC	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	2 cut(s)	146, 236
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstKTI	GATC	2 cut(s)	253, 292
BstMBI	GATC	2 cut(s)	250, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	363
Bsu36I	CCTNAGG	1 cut(s)	236
Cac8I	GCNNGC	1 cut(s)	368
CciI	TCATGA	1 cut(s)	349
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	2 cut(s)	64, 350
CviJI	RGCY	5 cut(s)	89, 145, 161, 223, 246
CviKI_1	RGCY	5 cut(s)	89, 145, 161, 223, 246
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	2 cut(s)	146, 236
DpnI	GATC	2 cut(s)	252, 291
DpnII	GATC	2 cut(s)	250, 289
DraIII	CACNNNGTG	1 cut(s)	211
DriI	GACNNNNNGTC	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	268
Eam1105I	GACNNNNNGTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	268
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	145
Eco81I	CCTNAGG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	145
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	129
EcoT14I	CCWWGG	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	2 cut(s)	67, 353
FaiI	YATR	5 cut(s)	65, 197, 219, 300, 351
FatI	CATG	2 cut(s)	63, 349
FriOI	GRGCYC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	162
Hin1II	CATG	2 cut(s)	67, 353
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	1 cut(s)	346
Hpy166II	GTNNAC	2 cut(s)	38, 73
Hpy188I	TCNGA	3 cut(s)	149, 255, 268
Hpy188III	TCNNGA	4 cut(s)	164, 235, 343, 350
Hpy8I	GTNNAC	2 cut(s)	38, 73
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	2 cut(s)	153, 399
HpyCH4V	TGCA	2 cut(s)	84, 190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	2 cut(s)	146, 236
Hsp92II	CATG	2 cut(s)	67, 353
Kzo9I	GATC	2 cut(s)	250, 289
LmnI	GCTCC	3 cut(s)	94, 121, 142
LpnPI	CCDG	7 cut(s)	94, 116, 143, 192, 248, 272, 333
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	2 cut(s)	252, 291
MboI	GATC	2 cut(s)	250, 289
MboII	GAAGA	5 cut(s)	59, 62, 99, 255, 368
MfeI	CAATTG	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	5 cut(s)	137, 168, 185, 281, 332
MmeI	TCCRAC	1 cut(s)	135
MseI	TTAA	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	131
MunI	CAATTG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	220
NdeII	GATC	2 cut(s)	250, 289
NlaIII	CATG	2 cut(s)	67, 353
NlaIV	GGNNCC	2 cut(s)	90, 396
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	67
PagI	TCATGA	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	346
PflMI	CCANNNNNTGG	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	90, 396
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	183
Sau3AI	GATC	2 cut(s)	250, 289
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	6 cut(s)	10, 135, 147, 163, 248, 276
Sse9I	AATT	5 cut(s)	137, 168, 185, 281, 332
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	153, 399
TasI	AATT	5 cut(s)	137, 168, 185, 281, 332
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	58
Van91I	CCANNNNNTGG	1 cut(s)	286
XagI	CCTNNNNNAGG	1 cut(s)	116
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.