Rroxscaffold_5G00379520

Chromatin modification-related protein EAF7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0008569
Physical Location & Seq
Forward (+)
59860580 .. 59862540
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00379520.1

Sequence Viewer

Length: 411 bp
ATGAAAGGTGGTGGCGGTGGCGGTGGTGGTGGTGGTGGTGGCGGCAAACCAAGAGAAGAAGAACAAGACGGCATGTCCGTACACTCTCCCTGCAAGGCTCCTCCTTCCTCTGCTTCTTCTCTCCCCAAGGAGCAATCACAGGTTGAATTGGAGCTCAGACTGTTAGAAGCTCTTGAAATTTATCCTCCAGTCAAATTGCAAGGCATACATCGTCACTTTGTGCTTTATGGGCTAATGGAGTTCCTGAGGAGAAGCTTTGATCGGAACTTCTCTTCTGACGAGGTTTTGCAATTGCTGGATCGGTTCTATAACTTGGAAATGCTGAAACCAGACGAGGAGGAGATGGACATCTTGAATCATGAGGAAGAATTTAGCTTGCCTCAAAGTTTCTTTGTTAAGGAGGAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Eaf7

Protein Analysis

136

Amino Acids

15.23

Weight (kDa)

4.76

Isoelectric Point (pI)

88.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 15, 21, 42
AclWI GGATC 1 cut(s) 306
AcsI RAATTY 2 cut(s) 177, 368
AdeI CACNNNGTG 1 cut(s) 220
AfaI GTAC 1 cut(s) 81
AgsI TTSAA 3 cut(s) 146, 176, 355
AhdI GACNNNNNGTC 1 cut(s) 73
AluBI AGCT 4 cut(s) 154, 170, 255, 375
AluI AGCT 4 cut(s) 154, 170, 255, 375
Alw21I GWGCWC 1 cut(s) 156
AlwI GGATC 1 cut(s) 306
ApoI RAATTY 2 cut(s) 177, 368
AxyI CCTNAGG 1 cut(s) 245
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BccI CCATC 1 cut(s) 337
BceAI ACGGC 1 cut(s) 85
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
BmeRI GACNNNNNGTC 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 171
BsaBI GATNNNNATC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 188
Bse21I CCTNAGG 1 cut(s) 245
Bse8I GATNNNNATC 1 cut(s) 347
BseDI CCNNGG 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 347
BseMII CTCAG 2 cut(s) 169, 236
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 4 cut(s) 90, 262, 350, 353
BsiHKAI GWGCWC 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 259, 298
BspACI CCGC 3 cut(s) 15, 21, 42
BspCNI CTCAG 2 cut(s) 168, 237
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 99
BspPI GGATC 1 cut(s) 306
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 259, 298
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 377
BstDEI CTNAG 2 cut(s) 155, 245
BstKTI GATC 2 cut(s) 262, 301
BstMBI GATC 2 cut(s) 259, 298
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNSI RCATGY 1 cut(s) 76
Bsu36I CCTNAGG 1 cut(s) 245
Cac8I GCNNGC 1 cut(s) 377
CciI TCATGA 1 cut(s) 358
Csp6I GTAC 1 cut(s) 80
CviAII CATG 2 cut(s) 73, 359
CviJI RGCY 6 cut(s) 98, 154, 170, 232, 255, 375
CviKI_1 RGCY 6 cut(s) 98, 154, 170, 232, 255, 375
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 2 cut(s) 155, 245
DpnI GATC 2 cut(s) 261, 300
DpnII GATC 2 cut(s) 259, 298
DraIII CACNNNGTG 1 cut(s) 220
DriI GACNNNNNGTC 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 277
Eam1105I GACNNNNNGTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 277
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 154
Eco81I CCTNAGG 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 76, 362
FaiI YATR 5 cut(s) 74, 206, 228, 309, 360
FatI CATG 2 cut(s) 72, 358
Fnu4HI GCNGC 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 43
GsuI CTGGAG 1 cut(s) 171
Hin1II CATG 2 cut(s) 76, 362
HindIII AAGCTT 1 cut(s) 253
HinfI GANTC 2 cut(s) 355, 404
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 158, 264, 277
Hpy188III TCNNGA 4 cut(s) 173, 244, 352, 359
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 93, 199, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 2 cut(s) 155, 245
Hsp92II CATG 2 cut(s) 76, 362
Kzo9I GATC 2 cut(s) 259, 298
LmnI GCTCC 3 cut(s) 103, 130, 151
LpnPI CCDG 6 cut(s) 103, 125, 201, 257, 281, 342
MaeIII GTNAC 1 cut(s) 212
MalI GATC 2 cut(s) 261, 300
MboI GATC 2 cut(s) 259, 298
MboII GAAGA 5 cut(s) 68, 71, 108, 264, 377
MfeI CAATTG 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 5 cut(s) 146, 177, 194, 290, 368
MseI TTAA 2 cut(s) 396, 409
MunI CAATTG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 229
NdeII GATC 2 cut(s) 259, 298
NlaIII CATG 2 cut(s) 76, 362
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 76
PagI TCATGA 1 cut(s) 358
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 2 cut(s) 355, 404
PkrI GCNGC 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 99
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 2 cut(s) 396, 409
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 2 cut(s) 259, 298
SduI GDGCHC 1 cut(s) 156
SetI ASST 7 cut(s) 10, 144, 156, 172, 257, 285, 377
Sse9I AATT 5 cut(s) 146, 177, 194, 290, 368
SsiI CCGC 3 cut(s) 15, 21, 42
SstI GAGCTC 1 cut(s) 156
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 162
TasI AATT 5 cut(s) 146, 177, 194, 290, 368
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 2 cut(s) 355, 404
Tru1I TTAA 2 cut(s) 396, 409
Tru9I TTAA 2 cut(s) 396, 409
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 67
XapI RAATTY 2 cut(s) 177, 368
XceI RCATGY 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.