RLG00000006357

Chromatin modification-related protein EAF7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008569
Physical Location & Seq
Reverse (-)
6485398 .. 6486834
1437 bp
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UTR
Exon/CDS
Intron
RLM00000006357

Sequence Viewer

Length: 339 bp
ATGTCCGTACACTCTCCCTGCAAGGCTCCTCCTTCCTCTGCTTCTTCTCTCCCCAAGGAGCAATCACAGGTTGAATTGGAGCTCAGACTGTTAGAAGCTCTTGAAATTTATCCTCCAGTCAAATTGCAAGGCATACATCGTCACTTTGTGCTTTATGGGCTAATGGAGTTCCTGAGGAGAAGCTTTGATCGGAACTTCTCTTCTGACGAGGTTTTGCAATTGCTGGATCGGTTCTATAACTTGGAAATGCTGAAACCAGACGAGGAGGAGATGGACATCTTGAATCATGAGGAAGAATTTAGCTTGCCTCAAAGTTTCTTTGTTAAGGAGGAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Eaf7

Protein Analysis

113

Amino Acids

13.16

Weight (kDa)

4.75

Isoelectric Point (pI)

85.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Eaf7 PF07904 27 - 99 6.5e-06 Chromatin modification-related protein EAF7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 234
AcsI RAATTY 2 cut(s) 105, 296
AdeI CACNNNGTG 1 cut(s) 148
AfaI GTAC 1 cut(s) 9
AgsI TTSAA 3 cut(s) 74, 104, 283
AluBI AGCT 4 cut(s) 82, 98, 183, 303
AluI AGCT 4 cut(s) 82, 98, 183, 303
Alw21I GWGCWC 1 cut(s) 84
AlwI GGATC 1 cut(s) 234
ApoI RAATTY 2 cut(s) 105, 296
AxyI CCTNAGG 1 cut(s) 173
BanII GRGCYC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 84
BccI CCATC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 116
Bse21I CCTNAGG 1 cut(s) 173
Bse8I GATNNNNATC 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 54
BseJI GATNNNNATC 1 cut(s) 275
BseMII CTCAG 2 cut(s) 97, 164
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 4 cut(s) 18, 190, 278, 281
BsiHKAI GWGCWC 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 187, 226
BspCNI CTCAG 2 cut(s) 96, 165
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 27
BspPI GGATC 1 cut(s) 234
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 2 cut(s) 187, 226
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 2 cut(s) 83, 173
BstKTI GATC 2 cut(s) 190, 229
BstMBI GATC 2 cut(s) 187, 226
BstMWI GCNNNNNNNGC 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 305
CciI TCATGA 1 cut(s) 286
Csp6I GTAC 1 cut(s) 8
CviAII CATG 1 cut(s) 287
CviJI RGCY 6 cut(s) 26, 82, 98, 160, 183, 303
CviKI_1 RGCY 6 cut(s) 26, 82, 98, 160, 183, 303
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 2 cut(s) 83, 173
DpnI GATC 2 cut(s) 189, 228
DpnII GATC 2 cut(s) 187, 226
DraIII CACNNNGTG 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 82
Eco81I CCTNAGG 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 1 cut(s) 290
FaiI YATR 4 cut(s) 134, 156, 237, 288
FatI CATG 1 cut(s) 286
FriOI GRGCYC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 99
Hin1II CATG 1 cut(s) 290
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 2 cut(s) 283, 332
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 3 cut(s) 86, 192, 205
Hpy188III TCNNGA 4 cut(s) 101, 172, 280, 287
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4V TGCA 3 cut(s) 21, 127, 217
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 2 cut(s) 83, 173
Hsp92II CATG 1 cut(s) 290
Kzo9I GATC 2 cut(s) 187, 226
LmnI GCTCC 3 cut(s) 31, 58, 79
LpnPI CCDG 6 cut(s) 31, 53, 129, 185, 209, 270
MaeIII GTNAC 1 cut(s) 140
MalI GATC 2 cut(s) 189, 228
MboI GATC 2 cut(s) 187, 226
MboII GAAGA 3 cut(s) 36, 192, 305
MfeI CAATTG 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 5 cut(s) 74, 105, 122, 218, 296
MseI TTAA 2 cut(s) 324, 337
MunI CAATTG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 157
NdeII GATC 2 cut(s) 187, 226
NlaIII CATG 1 cut(s) 290
NlaIV GGNNCC 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 140
PagI TCATGA 1 cut(s) 286
PfeI GAWTC 2 cut(s) 283, 332
Psp124BI GAGCTC 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 27
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 324, 337
Sau3AI GATC 2 cut(s) 187, 226
SduI GDGCHC 1 cut(s) 84
SetI ASST 6 cut(s) 72, 84, 100, 185, 213, 305
Sse9I AATT 5 cut(s) 74, 105, 122, 218, 296
SstI GAGCTC 1 cut(s) 84
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 90
TasI AATT 5 cut(s) 74, 105, 122, 218, 296
TfiI GAWTC 2 cut(s) 283, 332
Tru1I TTAA 2 cut(s) 324, 337
Tru9I TTAA 2 cut(s) 324, 337
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
XapI RAATTY 2 cut(s) 105, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.