Rmu_sc0002327.1_g000011

Chromatin modification-related protein EAF7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002327.1
OG0008569
Physical Location & Seq
Reverse (-)
38062 .. 39551
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002327.1_g000011.1.cds

Sequence Viewer

Length: 405 bp
atgaaaggtggtggtggtggtggtggtggcggtggcggcaaaccaagagaagaagaacaagacggcatgtccgtacactctccctgcaaggctcctccttcctctgcttcttctctccccaaggagcaatcacaggtcgaattggagctcagactgttagaagctcttgaaatttatcctccagtcaaattgcaaggcatacatcgtcactttgtgctttatgggctaatggagttcctgaggagaagctttgatcggaacttctcttctgacgaggttttgcaattgctggatcggttctataacttggaaatgctgaaaccagacgaggaggagatggacatcttgaatcatgaggaagaatttagcttgcctcaaagtttctttgttaaggaggaatcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Eaf7

Protein Analysis

134

Amino Acids

15.11

Weight (kDa)

4.76

Isoelectric Point (pI)

87.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 30, 36
AclWI GGATC 1 cut(s) 300
AcsI RAATTY 2 cut(s) 171, 362
AdeI CACNNNGTG 1 cut(s) 214
AfaI GTAC 1 cut(s) 75
AgsI TTSAA 2 cut(s) 170, 349
AhdI GACNNNNNGTC 1 cut(s) 67
AluBI AGCT 4 cut(s) 148, 164, 249, 369
AluI AGCT 4 cut(s) 148, 164, 249, 369
Alw21I GWGCWC 1 cut(s) 150
AlwI GGATC 1 cut(s) 300
ApoI RAATTY 2 cut(s) 171, 362
AxyI CCTNAGG 1 cut(s) 239
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 1 cut(s) 331
BceAI ACGGC 1 cut(s) 79
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
BmeRI GACNNNNNGTC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 93
BpmI CTGGAG 1 cut(s) 165
BsaBI GATNNNNATC 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 182
Bse21I CCTNAGG 1 cut(s) 239
Bse8I GATNNNNATC 1 cut(s) 341
BseDI CCNNGG 1 cut(s) 120
BseJI GATNNNNATC 1 cut(s) 341
BseMII CTCAG 2 cut(s) 163, 230
BseNI ACTGG 1 cut(s) 182
BseRI GAGGAG 4 cut(s) 84, 256, 344, 347
BsiHKAI GWGCWC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 2 cut(s) 253, 292
BspACI CCGC 2 cut(s) 30, 36
BspCNI CTCAG 2 cut(s) 162, 231
BspHI TCATGA 1 cut(s) 352
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 1 cut(s) 300
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 2 cut(s) 253, 292
BssT1I CCWWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 371
BstDEI CTNAG 2 cut(s) 149, 239
BstKTI GATC 2 cut(s) 256, 295
BstMBI GATC 2 cut(s) 253, 292
BstMWI GCNNNNNNNGC 2 cut(s) 36, 223
BstNSI RCATGY 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 239
Cac8I GCNNGC 1 cut(s) 371
CciI TCATGA 1 cut(s) 352
Csp6I GTAC 1 cut(s) 74
CviAII CATG 2 cut(s) 67, 353
CviJI RGCY 6 cut(s) 92, 148, 164, 226, 249, 369
CviKI_1 RGCY 6 cut(s) 92, 148, 164, 226, 249, 369
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 2 cut(s) 149, 239
DpnI GATC 2 cut(s) 255, 294
DpnII GATC 2 cut(s) 253, 292
DraIII CACNNNGTG 1 cut(s) 214
DriI GACNNNNNGTC 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 271
Eam1105I GACNNNNNGTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 271
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 148
Eco81I CCTNAGG 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 2 cut(s) 70, 356
FaiI YATR 5 cut(s) 68, 200, 222, 303, 354
FatI CATG 2 cut(s) 66, 352
Fnu4HI GCNGC 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 165
Hin1II CATG 2 cut(s) 70, 356
HindIII AAGCTT 1 cut(s) 247
HinfI GANTC 2 cut(s) 349, 398
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 3 cut(s) 152, 258, 271
Hpy188III TCNNGA 4 cut(s) 167, 238, 346, 353
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4V TGCA 3 cut(s) 87, 193, 283
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 223
HpyF3I CTNAG 2 cut(s) 149, 239
Hsp92II CATG 2 cut(s) 70, 356
Kzo9I GATC 2 cut(s) 253, 292
LmnI GCTCC 3 cut(s) 97, 124, 145
LpnPI CCDG 6 cut(s) 97, 119, 195, 251, 275, 336
MaeIII GTNAC 1 cut(s) 206
MalI GATC 2 cut(s) 255, 294
MboI GATC 2 cut(s) 253, 292
MboII GAAGA 5 cut(s) 62, 65, 102, 258, 371
MfeI CAATTG 1 cut(s) 284
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 5 cut(s) 140, 171, 188, 284, 362
MseI TTAA 2 cut(s) 390, 403
MunI CAATTG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 36, 223
NdeII GATC 2 cut(s) 253, 292
NlaIII CATG 2 cut(s) 70, 356
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 206
NspI RCATGY 1 cut(s) 70
PagI TCATGA 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PfeI GAWTC 2 cut(s) 349, 398
PkrI GCNGC 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 93
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 390, 403
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 2 cut(s) 253, 292
SduI GDGCHC 1 cut(s) 150
SetI ASST 7 cut(s) 10, 138, 150, 166, 251, 279, 371
Sse9I AATT 5 cut(s) 140, 171, 188, 284, 362
SsiI CCGC 2 cut(s) 30, 36
SstI GAGCTC 1 cut(s) 150
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 138
TasI AATT 5 cut(s) 140, 171, 188, 284, 362
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 2 cut(s) 349, 398
Tru1I TTAA 2 cut(s) 390, 403
Tru9I TTAA 2 cut(s) 390, 403
TseFI GTSAC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 61
XapI RAATTY 2 cut(s) 171, 362
XceI RCATGY 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.