RchiOBHm_Chr4g0438511

Chromatin modification-related protein EAF7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0008569
Physical Location & Seq
Forward (+)
61188483 .. 61191107
2625 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40664

Sequence Viewer

Length: 408 bp
ATGAAAGGTGGTGGTGGTGGTGGTGGTGGTAGTGGTGGCGGCAAACCAAGAGAAGAAGAACAAGACGGCATGTCCGTACACTCTCCCTGCAAGGCTCCTCCTTCCTCTGCTTCTTCTCTCCCCAAGGAGCAATCACAGGTCGAATTGGAGCTCAGACTGTTAGAAGCTCTTGAAATTTATCCTCCAGTCAAATTGCAAGGCATACATCGTCACTTTGTGCTTTATGGGCTAATGGAGTTCCTGAGGAGAAGCTTTGATCGGAACTTCTCTTCTGACGAGGTTTTGCAATTGCTGGATCGGTTCTATAACTTGGAAATGCTGAAACCAGATGAGGAGGAGATGGACATCTTGAATCATGAGGAAGAATTTAGCTTGCCTCAAAGTTTCTTTGTTAAGGAGGAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Eaf7

Protein Analysis

135

Amino Acids

15.2

Weight (kDa)

4.76

Isoelectric Point (pI)

85.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 39
AclWI GGATC 1 cut(s) 303
AcsI RAATTY 2 cut(s) 174, 365
AdeI CACNNNGTG 1 cut(s) 217
AfaI GTAC 1 cut(s) 78
AgsI TTSAA 2 cut(s) 173, 352
AhdI GACNNNNNGTC 1 cut(s) 70
AluBI AGCT 4 cut(s) 151, 167, 252, 372
AluI AGCT 4 cut(s) 151, 167, 252, 372
Alw21I GWGCWC 1 cut(s) 153
AlwI GGATC 1 cut(s) 303
ApoI RAATTY 2 cut(s) 174, 365
AxyI CCTNAGG 1 cut(s) 242
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 153
BccI CCATC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 82
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
BmeRI GACNNNNNGTC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 185
Bse21I CCTNAGG 1 cut(s) 242
Bse8I GATNNNNATC 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 123
BseJI GATNNNNATC 1 cut(s) 344
BseMII CTCAG 2 cut(s) 166, 233
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 4 cut(s) 87, 259, 347, 350
BsiHKAI GWGCWC 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 2 cut(s) 256, 295
BspACI CCGC 1 cut(s) 39
BspCNI CTCAG 2 cut(s) 165, 234
BspHI TCATGA 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 96
BspPI GGATC 1 cut(s) 303
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 2 cut(s) 256, 295
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 159
Bst6I CTCTTC 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 374
BstDEI CTNAG 2 cut(s) 152, 242
BstKTI GATC 2 cut(s) 259, 298
BstMBI GATC 2 cut(s) 256, 295
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstNSI RCATGY 1 cut(s) 73
Bsu36I CCTNAGG 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 374
CciI TCATGA 1 cut(s) 355
Csp6I GTAC 1 cut(s) 77
CviAII CATG 2 cut(s) 70, 356
CviJI RGCY 6 cut(s) 95, 151, 167, 229, 252, 372
CviKI_1 RGCY 6 cut(s) 95, 151, 167, 229, 252, 372
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 2 cut(s) 152, 242
DpnI GATC 2 cut(s) 258, 297
DpnII GATC 2 cut(s) 256, 295
DraIII CACNNNGTG 1 cut(s) 217
DriI GACNNNNNGTC 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 274
Eam1105I GACNNNNNGTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 274
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 151
Eco81I CCTNAGG 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 2 cut(s) 73, 359
FaiI YATR 5 cut(s) 71, 203, 225, 306, 357
FatI CATG 2 cut(s) 69, 355
Fnu4HI GCNGC 1 cut(s) 40
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 168
Hin1II CATG 2 cut(s) 73, 359
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 2 cut(s) 352, 401
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 3 cut(s) 155, 261, 274
Hpy188III TCNNGA 4 cut(s) 170, 241, 349, 356
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 3 cut(s) 90, 196, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
HpyF3I CTNAG 2 cut(s) 152, 242
Hsp92II CATG 2 cut(s) 73, 359
Kzo9I GATC 2 cut(s) 256, 295
LmnI GCTCC 3 cut(s) 100, 127, 148
LpnPI CCDG 6 cut(s) 100, 122, 198, 254, 278, 339
MaeIII GTNAC 1 cut(s) 209
MalI GATC 2 cut(s) 258, 297
MboI GATC 2 cut(s) 256, 295
MboII GAAGA 5 cut(s) 65, 68, 105, 261, 374
MfeI CAATTG 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 5 cut(s) 143, 174, 191, 287, 365
MseI TTAA 2 cut(s) 393, 406
MunI CAATTG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 226
NdeII GATC 2 cut(s) 256, 295
NlaIII CATG 2 cut(s) 73, 359
NlaIV GGNNCC 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 209
NspI RCATGY 1 cut(s) 73
PagI TCATGA 1 cut(s) 355
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PfeI GAWTC 2 cut(s) 352, 401
PkrI GCNGC 1 cut(s) 41
Psp124BI GAGCTC 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 96
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 2 cut(s) 393, 406
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 2 cut(s) 256, 295
SduI GDGCHC 1 cut(s) 153
SetI ASST 7 cut(s) 10, 141, 153, 169, 254, 282, 374
Sse9I AATT 5 cut(s) 143, 174, 191, 287, 365
SsiI CCGC 1 cut(s) 39
SstI GAGCTC 1 cut(s) 153
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 141
TasI AATT 5 cut(s) 143, 174, 191, 287, 365
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 2 cut(s) 352, 401
Tru1I TTAA 2 cut(s) 393, 406
Tru9I TTAA 2 cut(s) 393, 406
TseFI GTSAC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 64
XapI RAATTY 2 cut(s) 174, 365
XceI RCATGY 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.