Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00751

Orthogroup ID

OG0008569

Physical Location & Seq

Genomic Coordinates Forward (+)

377091 .. 378574

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G016560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAAAGGTGGTGCTGGTGGTGGTGCTGCTGGTGGCGGCAAACCAAGAGAAGAAGAACAAGACGGCATGTCCGTACACTCTCCCTGCAAGGCTCCTCCTTCCTCCGCTTCTTCTCTCCCCAAGGAGCAATCACAGGTCGAATTGGAGCTCAGACTGTTAGAAGCTCTTGAAATTTATCCTCCAGTCAAATTGCAAGGCATACATCGTCACTTTGTGCTTTATGGGCTAATGGAGTTCCTGAGGAGAAGCTTTGATCGGAACTTCTCTTCTGACGAGGTTTTGCAATTGCTGGATCGGTTCTATAACTTGGAAATGCTGAAACCAGACGAGGAGGAGATGGACATCTTGAATCATGAGGAAGAATTTAGCTTGCCTCAAAGTTTCTTTGTTAAGGAGGAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Eaf7

Protein Analysis

134

Amino Acids

15.16

Weight (kDa)

4.76

Isoelectric Point (pI)

81.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26470
fragaria_vesca	FvH4_4g30180
malus_domestica	MD02G1257200.v1.1 MD13G1063500.v1.1 MD16G1062000.v1.1
prunus_persica	Prupe.1G285900_v2.0.a1
pyrus_communis	pycom02g21790 pycom13g05610 pycom16g05420
rosa_chinensis	RchiOBHm_Chr4g0438511
rosa_laevigata	RLG00000006357
rosa_multiflora	Rmu_sc0002327.1_g000011 Rmu_sc0004398.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379520
rosa_rugosa	Rorug04G0310500 Rorug04G0310600 Rorug04G0310700 Rorug04G0310800 Rorug04G0310900 Rorug04G0311000
rosa_samantha	Rh4BG372600
rosa_wichuraiana	Rw0G006610 Rw0G016560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	36, 105
AclWI	GGATC	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	171, 362
AdeI	CACNNNGTG	1 cut(s)	214
AfaI	GTAC	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	170, 349
AhdI	GACNNNNNGTC	1 cut(s)	67
AluBI	AGCT	4 cut(s)	148, 164, 249, 369
AluI	AGCT	4 cut(s)	148, 164, 249, 369
Alw21I	GWGCWC	1 cut(s)	150
AlwI	GGATC	1 cut(s)	300
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	2 cut(s)	171, 362
AxyI	CCTNAGG	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	1 cut(s)	331
BceAI	ACGGC	1 cut(s)	79
BisI	GCNGC	2 cut(s)	27, 37
BlsI	GCNGC	2 cut(s)	28, 38
BmeRI	GACNNNNNGTC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	182
Bse21I	CCTNAGG	1 cut(s)	239
Bse8I	GATNNNNATC	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	120
BseJI	GATNNNNATC	1 cut(s)	341
BseMII	CTCAG	2 cut(s)	163, 230
BseNI	ACTGG	1 cut(s)	182
BseRI	GAGGAG	4 cut(s)	84, 256, 344, 347
BseXI	GCAGC	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	253, 292
BspACI	CCGC	2 cut(s)	36, 105
BspCNI	CTCAG	2 cut(s)	162, 231
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	2 cut(s)	253, 292
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	2 cut(s)	149, 239
BstKTI	GATC	2 cut(s)	256, 295
BstMBI	GATC	2 cut(s)	253, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNSI	RCATGY	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	13
Bsu36I	CCTNAGG	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	371
CciI	TCATGA	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	2 cut(s)	67, 353
CviJI	RGCY	6 cut(s)	92, 148, 164, 226, 249, 369
CviKI_1	RGCY	6 cut(s)	92, 148, 164, 226, 249, 369
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	2 cut(s)	149, 239
DpnI	GATC	2 cut(s)	255, 294
DpnII	GATC	2 cut(s)	253, 292
DraIII	CACNNNGTG	1 cut(s)	214
DriI	GACNNNNNGTC	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	271
Eam1105I	GACNNNNNGTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	271
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	148
Eco81I	CCTNAGG	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	2 cut(s)	70, 356
FaiI	YATR	5 cut(s)	68, 200, 222, 303, 354
FatI	CATG	2 cut(s)	66, 352
Fnu4HI	GCNGC	2 cut(s)	27, 37
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	27, 37
GluI	GCNGC	2 cut(s)	27, 37
GsuI	CTGGAG	1 cut(s)	165
Hin1II	CATG	2 cut(s)	70, 356
HindIII	AAGCTT	1 cut(s)	247
HinfI	GANTC	2 cut(s)	349, 398
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	3 cut(s)	152, 258, 271
Hpy188III	TCNNGA	4 cut(s)	167, 238, 346, 353
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	108
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4V	TGCA	3 cut(s)	87, 193, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	2 cut(s)	149, 239
Hsp92II	CATG	2 cut(s)	70, 356
Kzo9I	GATC	2 cut(s)	253, 292
LmnI	GCTCC	3 cut(s)	97, 124, 145
LpnPI	CCDG	7 cut(s)	15, 97, 119, 195, 251, 275, 336
Lsp1109I	GCAGC	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	2 cut(s)	255, 294
MboI	GATC	2 cut(s)	253, 292
MboII	GAAGA	5 cut(s)	62, 65, 102, 258, 371
MfeI	CAATTG	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	5 cut(s)	140, 171, 188, 284, 362
MseI	TTAA	2 cut(s)	390, 403
MunI	CAATTG	1 cut(s)	284
MwoI	GCNNNNNNNGC	1 cut(s)	223
NdeII	GATC	2 cut(s)	253, 292
NlaIII	CATG	2 cut(s)	70, 356
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	206
NspI	RCATGY	1 cut(s)	70
PagI	TCATGA	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	349, 398
PkrI	GCNGC	2 cut(s)	28, 38
Psp124BI	GAGCTC	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	93
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	390, 403
SatI	GCNGC	2 cut(s)	27, 37
Sau3AI	GATC	2 cut(s)	253, 292
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	7 cut(s)	10, 138, 150, 166, 251, 279, 371
Sse9I	AATT	5 cut(s)	140, 171, 188, 284, 362
SsiI	CCGC	2 cut(s)	36, 105
SstI	GAGCTC	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	138
TasI	AATT	5 cut(s)	140, 171, 188, 284, 362
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	2 cut(s)	349, 398
Tru1I	TTAA	2 cut(s)	390, 403
Tru9I	TTAA	2 cut(s)	390, 403
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	61
XapI	RAATTY	2 cut(s)	171, 362
XceI	RCATGY	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.