Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008569

Physical Location & Seq

Genomic Coordinates Forward (+)

30957467 .. 30959862

Gene Structure 2396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1257200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAAAGTGGTGGCAAAGGAAGAGAAGAGGAACCAGATGGCATGTCTGTACGCTCTCCATGCAACGCTTCCCCTTCCTCTGCTTCTTCTCTCCCCAAGGACCAATCAGAGATTGAGTTGGAGCTTATACTGCTAGAAGCTCTTGAATTTTATCCCCTGACGAAATTACAAGGCATACATCGTCACTTTGTCCTTTATGGTTTAATGGATTTTCTGCAGAGAAGGTTTGACCGGTACTTCTCTTCTGACGAGGTTCTGCAATTGCTCGATCGGTTCTACAACTTGGAAATGCTGAAGCCAGACGATGACGAGATGGAAATCCTGAATCACGAGGAAGATTTTTGCTTGCCTCCAAGTTTCTTTGTTAAGGAAGAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Eaf7

Protein Analysis

127

Amino Acids

14.67

Weight (kDa)

4.41

Isoelectric Point (pI)

81.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26470
fragaria_vesca	FvH4_4g30180
malus_domestica	MD02G1257200.v1.1 MD13G1063500.v1.1 MD16G1062000.v1.1
prunus_persica	Prupe.1G285900_v2.0.a1
pyrus_communis	pycom02g21790 pycom13g05610 pycom16g05420
rosa_chinensis	RchiOBHm_Chr4g0438511
rosa_laevigata	RLG00000006357
rosa_multiflora	Rmu_sc0002327.1_g000011 Rmu_sc0004398.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379520
rosa_rugosa	Rorug04G0310500 Rorug04G0310600 Rorug04G0310700 Rorug04G0310800 Rorug04G0310900 Rorug04G0311000
rosa_samantha	Rh4BG372600
rosa_wichuraiana	Rw0G006610 Rw0G016560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	2 cut(s)	51, 236
AgeI	ACCGGT	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	146
AluBI	AGCT	2 cut(s)	124, 140
AluI	AGCT	2 cut(s)	124, 140
ApoI	RAATTY	1 cut(s)	146
AsiGI	ACCGGT	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	100
BauI	CACGAG	1 cut(s)	329
BccI	CCATC	2 cut(s)	32, 307
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	231
Bse118I	RCCGGY	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	317
BseDI	CCNNGG	1 cut(s)	96
BseJI	GATNNNNATC	1 cut(s)	317
Bsh1285I	CGRYCG	1 cut(s)	271
BshTI	ACCGGT	1 cut(s)	231
BsiEI	CGRYCG	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	268
BssSI	CACGAG	1 cut(s)	329
BssT1I	CCWWGG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	329
Bst6I	CTCTTC	3 cut(s)	16, 21, 247
BstC8I	GCNNGC	1 cut(s)	347
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 130
BstNSI	RCATGY	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	215
Cac8I	GCNNGC	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	50, 235
CspAI	ACCGGT	1 cut(s)	231
CviAII	CATG	2 cut(s)	43, 60
CviJI	RGCY	3 cut(s)	124, 140, 298
CviKI_1	RGCY	3 cut(s)	124, 140, 298
CviQI	GTAC	2 cut(s)	50, 235
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	3 cut(s)	16, 21, 247
EarI	CTCTTC	3 cut(s)	16, 21, 247
Eco130I	CCWWGG	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	2 cut(s)	46, 63
FaiI	YATR	6 cut(s)	44, 61, 128, 176, 198, 379
FatI	CATG	2 cut(s)	42, 59
FspBI	CTAG	1 cut(s)	134
HapII	CCGG	1 cut(s)	232
Hin1II	CATG	2 cut(s)	46, 63
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	109, 247
Hpy188III	TCNNGA	3 cut(s)	143, 322, 329
HpyAV	CCTTC	2 cut(s)	84, 216
HpyCH4V	TGCA	3 cut(s)	63, 217, 259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 130
Hsp92II	CATG	2 cut(s)	46, 63
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	5 cut(s)	48, 170, 245, 312, 335
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	5 cut(s)	33, 38, 78, 234, 347
MfeI	CAATTG	1 cut(s)	260
MluCI	AATT	3 cut(s)	146, 164, 260
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	5 cut(s)	22, 88, 244, 325, 360
MseI	TTAA	2 cut(s)	203, 366
MspI	CCGG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	260
MwoI	GCNNNNNNNGC	2 cut(s)	60, 130
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	2 cut(s)	46, 63
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	325
PinAI	ACCGGT	1 cut(s)	231
Ple19I	CGATCG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	219
PvuI	CGATCG	1 cut(s)	271
RsaI	GTAC	2 cut(s)	51, 236
RsaNI	GTAC	2 cut(s)	50, 235
SaqAI	TTAA	2 cut(s)	203, 366
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	1 cut(s)	100
SetI	ASST	4 cut(s)	126, 142, 227, 255
SfcI	CTRYAG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	100
Sse9I	AATT	3 cut(s)	146, 164, 260
SspMI	CTAG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	96
TaqI	TCGA	1 cut(s)	267
TasI	AATT	3 cut(s)	146, 164, 260
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	2 cut(s)	203, 366
Tru9I	TTAA	2 cut(s)	203, 366
TseFI	GTSAC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	1 cut(s)	46
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.