Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004473

Physical Location & Seq

Genomic Coordinates Forward (+)

30233991 .. 30236173

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30770.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGATTCCCTCTCATCGGTTTCTCCCTCCATCATCCTCCCTCCGACCGCCAACCCTCTCCGTCCACGGCGCCGCCGGATGAGCCTCTCTCCGGTCAGCCTCCACAACCGCAACCTCTGCCTGTCCTCCATTTTCGGAGTGCCGCGCTCTCCTGATCTTTCCACAAGAAGGTTTTGTCACAGAGAAGCTTCGTGCAGGTCGACCGGCGGCGGCGGAGCTGGGGCGAGTCAGGAGGGAGAAGATTCCGACGATGAGAGCGAGCAGGTGGAGAGGGCGCTTCATCTCGACGGTAGCATCCCTTCCACTTCCGACGAGTTTGTGAAGCGCGTGTCGTCACGCGCCTACGATATGCGGCGGCATCTCCAGCAGACGTTTGATAGCAGCAGCTATGATGTGTTGGAGGCTAATCCTTGGAGGGAAACTTCCAAGCCTGTGTATGTATTAACTCAGAGAGAAAACCAGTTGTGCACAATGAAAACGCGAAGAAATGTTAGTGAAGTTGAAAGGGAGCTTGGGCAATTGTTTTCCAAAGGAGGAAAGTGGAACCAAGCTAAGCAGCCTAGAAATGGCAACAAGTTCCAGATGCTTGTTGAGGATATTAGGGATGGAGTGCTTGTCTTCGAGGATGCAAATGAAGCAGTGAAGTATTGTGATTTGTTGCAAGGAGGCGGCCAAGGCTGTGAAGGTGTTGCAGAGATAGAGGCCTCATCAGTATTCGATCTGTGCCAGAAAATGAGAGCTCTTGCAGTGCTGTTCCGGCGTGGGAGAAAGCCTCCTCTGCCTCAAAGCTTAGAGCTCAACCTTAGAGCCAGGAAGCGCTCCCTTGAAGACCAAGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3110

Protein Analysis

281

Amino Acids

31.43

Weight (kDa)

8.16

Isoelectric Point (pI)

79.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13990 AT1G13990 AT1G13990
fragaria_vesca	FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770
malus_domestica	MD13G1068600.v1.1 MD16G1067400.v1.1
prunus_persica	Prupe.1G279300_v2.0.a1
pyrus_communis	pycom13g06040 pycom16g05890
rosa_chinensis	RchiOBHm_Chr4g0439161
rosa_laevigata	RLG00000006292
rosa_multiflora	Rmu_sc0002236.1_g000007 Rmu_sc0027506.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380140
rosa_rugosa	Rorug04G0316300 Rorug04G0316400
rosa_samantha	Rh4AG367100 Rh4BG378700 Rh4CG393000 Rh4DG373300
rosa_wichuraiana	Rw0G011690 Rw5G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	253
Acc36I	ACCTGC	2 cut(s)	186, 253
AccB1I	GGYRCC	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	200
AccII	CGCG	4 cut(s)	145, 327, 339, 481
AcoI	YGGCCR	1 cut(s)	670
AcyI	GRCGYC	1 cut(s)	70
AfeI	AGCGCT	1 cut(s)	818
AfiI	CCNNNNNNNGG	4 cut(s)	16, 91, 168, 566
AgsI	TTSAA	2 cut(s)	503, 827
AjnI	CCWGG	1 cut(s)	809
AjuI	GAANNNNNNNTTGG	2 cut(s)	495, 527
AluBI	AGCT	8 cut(s)	188, 218, 387, 511, 551, 740, 789, 796
AluI	AGCT	8 cut(s)	188, 218, 387, 511, 551, 740, 789, 796
Alw21I	GWGCWC	3 cut(s)	470, 742, 798
Alw44I	GTGCAC	1 cut(s)	466
Aor51HI	AGCGCT	1 cut(s)	818
AoxI	GGCC	2 cut(s)	670, 702
ApaLI	GTGCAC	1 cut(s)	466
ApeKI	GCWGC	3 cut(s)	381, 384, 556
AspLEI	GCGC	6 cut(s)	72, 147, 277, 327, 341, 819
BaeGI	GKGCMC	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	69
BanII	GRGCYC	2 cut(s)	742, 798
BarI	GAAGNNNNNNTAC	2 cut(s)	283, 315
BbsI	GAAGAC	2 cut(s)	610, 834
Bbv12I	GWGCWC	3 cut(s)	470, 742, 798
BbvI	GCAGC	3 cut(s)	393, 396, 568
BccI	CCATC	2 cut(s)	38, 599
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	811
BfaI	CTAG	1 cut(s)	561
BfoI	RGCGCY	3 cut(s)	73, 278, 820
BfuAI	ACCTGC	2 cut(s)	186, 253
BlpI	GCTNAGC	1 cut(s)	552
Bme1390I	CCNGG	1 cut(s)	811
BmiI	GGNNCC	2 cut(s)	71, 545
BmrFI	CCNGG	1 cut(s)	811
BmsI	GCATC	4 cut(s)	303, 367, 573, 616
BpiI	GAAGAC	2 cut(s)	610, 834
BplI	GAGNNNNNCTC	4 cut(s)	73, 105, 757, 789
BpmI	CTGGAG	1 cut(s)	347
Bpu1102I	GCTNAGC	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	70
BsaJI	CCNNGG	3 cut(s)	65, 410, 673
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 91, 168, 566
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	811
BseDI	CCNNGG	3 cut(s)	65, 410, 673
BseGI	GGATG	5 cut(s)	33, 84, 294, 610, 631
BseLI	CCNNNNNNNGG	4 cut(s)	16, 91, 168, 566
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	765
BseSI	GKGCMC	1 cut(s)	470
BseXI	GCAGC	3 cut(s)	393, 396, 568
BseYI	CCCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	214
Bsh1236I	CGCG	4 cut(s)	145, 327, 339, 481
Bsh1285I	CGRYCG	2 cut(s)	48, 204
BshFI	GGCC	2 cut(s)	672, 704
BshNI	GGYRCC	1 cut(s)	69
BsiEI	CGRYCG	2 cut(s)	48, 204
BsiHKAI	GWGCWC	3 cut(s)	470, 742, 798
BsiSI	CCGG	4 cut(s)	76, 92, 204, 757
BslI	CCNNNNNNNGG	4 cut(s)	16, 91, 168, 566
BsnI	GGCC	2 cut(s)	672, 704
Bsp1286I	GDGCHC	3 cut(s)	470, 742, 798
Bsp143I	GATC	2 cut(s)	154, 718
Bsp1720I	GCTNAGC	1 cut(s)	552
BspANI	GGCC	2 cut(s)	672, 704
BspCNI	CTCAG	1 cut(s)	460
BspFNI	CGCG	4 cut(s)	145, 327, 339, 481
BspLI	GGNNCC	2 cut(s)	71, 545
BspMI	ACCTGC	2 cut(s)	186, 253
BspT107I	GGYRCC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	460
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	65, 410, 673
BssMI	GATC	2 cut(s)	154, 718
BssNI	GRCGYC	1 cut(s)	70
BssT1I	CCWWGG	2 cut(s)	410, 673
Bst2UI	CCWGG	1 cut(s)	811
Bst4CI	ACNGT	1 cut(s)	290
BstACI	GRCGYC	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	4 cut(s)	447, 552, 790, 803
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	5 cut(s)	33, 84, 294, 610, 631
BstFNI	CGCG	4 cut(s)	145, 327, 339, 481
BstH2I	RGCGCY	3 cut(s)	73, 278, 820
BstHHI	GCGC	6 cut(s)	72, 147, 277, 327, 341, 819
BstKTI	GATC	2 cut(s)	157, 721
BstMBI	GATC	2 cut(s)	154, 718
BstMCI	CGRYCG	2 cut(s)	48, 204
BstMWI	GCNNNNNNNGC	7 cut(s)	81, 117, 364, 635, 675, 757, 778
BstNI	CCWGG	1 cut(s)	811
BstSCI	CCNGG	1 cut(s)	809
BstSLI	GKGCMC	1 cut(s)	470
BstUI	CGCG	4 cut(s)	145, 327, 339, 481
BstV1I	GCAGC	3 cut(s)	393, 396, 568
BstV2I	GAAGAC	2 cut(s)	610, 834
BsuRI	GGCC	2 cut(s)	672, 704
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	5 cut(s)	33, 84, 294, 610, 631
BtsI	GCAGTG	2 cut(s)	645, 753
BtsIMutI	CAGTG	2 cut(s)	645, 753
BveI	ACCTGC	2 cut(s)	186, 253
Cac8I	GCNNGC	1 cut(s)	260
CfoI	GCGC	6 cut(s)	72, 147, 277, 327, 341, 819
Cfr10I	RCCGGY	1 cut(s)	203
DdeI	CTNAG	4 cut(s)	447, 552, 790, 803
DinI	GGCGCC	1 cut(s)	71
DpnI	GATC	2 cut(s)	156, 720
DpnII	GATC	2 cut(s)	154, 718
EaeI	YGGCCR	1 cut(s)	670
EciI	GGCGGA	1 cut(s)	228
Ecl136II	GAGCTC	2 cut(s)	740, 796
Eco130I	CCWWGG	2 cut(s)	410, 673
Eco147I	AGGCCT	1 cut(s)	704
Eco24I	GRGCYC	2 cut(s)	742, 798
Eco47III	AGCGCT	1 cut(s)	818
Eco53kI	GAGCTC	2 cut(s)	740, 796
EcoICRI	GAGCTC	2 cut(s)	740, 796
EcoRII	CCWGG	1 cut(s)	809
EcoT14I	CCWWGG	2 cut(s)	410, 673
EcoT38I	GRGCYC	2 cut(s)	742, 798
EgeI	GGCGCC	1 cut(s)	71
EheI	GGCGCC	1 cut(s)	71
ErhI	CCWWGG	2 cut(s)	410, 673
FaiI	YATR	3 cut(s)	350, 390, 438
FblI	GTMKAC	1 cut(s)	200
FokI	GGATG	5 cut(s)	20, 91, 281, 617, 638
FriOI	GRGCYC	2 cut(s)	742, 798
FspBI	CTAG	1 cut(s)	561
GlaI	GCGC	6 cut(s)	71, 146, 276, 326, 340, 818
GsaI	CCCAGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	347
HaeII	RGCGCY	3 cut(s)	73, 278, 820
HaeIII	GGCC	2 cut(s)	672, 704
HapII	CCGG	4 cut(s)	76, 92, 204, 757
HhaI	GCGC	6 cut(s)	72, 147, 277, 327, 341, 819
Hin1I	GRCGYC	1 cut(s)	70
Hin6I	GCGC	6 cut(s)	70, 145, 275, 325, 339, 817
HinP1I	GCGC	6 cut(s)	70, 145, 275, 325, 339, 817
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HindIII	AAGCTT	2 cut(s)	186, 787
HinfI	GANTC	3 cut(s)	5, 226, 242
HpaII	CCGG	4 cut(s)	76, 92, 204, 757
Hpy166II	GTNNAC	3 cut(s)	65, 201, 468
Hpy188I	TCNGA	5 cut(s)	45, 137, 247, 310, 450
Hpy188III	TCNNGA	4 cut(s)	152, 230, 284, 580
Hpy8I	GTNNAC	3 cut(s)	65, 201, 468
Hpy99I	CGWCG	3 cut(s)	251, 290, 314
HpyAV	CCTTC	3 cut(s)	162, 309, 677
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	6 cut(s)	195, 468, 629, 661, 692, 746
HpyF10VI	GCNNNNNNNGC	7 cut(s)	81, 117, 364, 635, 675, 757, 778
HpyF3I	CTNAG	4 cut(s)	447, 552, 790, 803
HpySE526I	ACGT	1 cut(s)	371
Hsp92I	GRCGYC	1 cut(s)	70
HspAI	GCGC	6 cut(s)	70, 145, 275, 325, 339, 817
KasI	GGCGCC	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	154, 718
LmnI	GCTCC	3 cut(s)	215, 508, 824
Lsp1109I	GCAGC	3 cut(s)	393, 396, 568
LweI	GCATC	4 cut(s)	303, 367, 573, 616
MaeI	CTAG	1 cut(s)	561
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	2 cut(s)	176, 333
MalI	GATC	2 cut(s)	156, 720
MboI	GATC	2 cut(s)	154, 718
MboII	GAAGA	4 cut(s)	251, 495, 610, 839
MfeI	CAATTG	1 cut(s)	518
MhlI	GDGCHC	3 cut(s)	470, 742, 798
MluCI	AATT	1 cut(s)	518
Mly113I	GGCGCC	1 cut(s)	70
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	4 cut(s)	68, 270, 333, 378
MseI	TTAA	1 cut(s)	443
MspI	CCGG	4 cut(s)	76, 92, 204, 757
MspR9I	CCNGG	1 cut(s)	811
MunI	CAATTG	1 cut(s)	518
MvaI	CCWGG	1 cut(s)	811
MvnI	CGCG	4 cut(s)	145, 327, 339, 481
MwoI	GCNNNNNNNGC	7 cut(s)	81, 117, 364, 635, 675, 757, 778
NarI	GGCGCC	1 cut(s)	70
NdeII	GATC	2 cut(s)	154, 718
NlaIV	GGNNCC	2 cut(s)	71, 545
NmuCI	GTSAC	2 cut(s)	176, 333
PaqCI	CACCTGC	1 cut(s)	253
PceI	AGGCCT	1 cut(s)	704
PcsI	WCGNNNNNNNCGW	2 cut(s)	197, 255
PfeI	GAWTC	2 cut(s)	5, 242
PleI	GAGTC	1 cut(s)	234
PluTI	GGCGCC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	234
Psp124BI	GAGCTC	2 cut(s)	742, 798
Psp6I	CCWGG	1 cut(s)	809
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	809
PspN4I	GGNNCC	2 cut(s)	71, 545
SacI	GAGCTC	2 cut(s)	742, 798
SalI	GTCGAC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	443
Sau3AI	GATC	2 cut(s)	154, 718
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	811
SduI	GDGCHC	3 cut(s)	470, 742, 798
SfaNI	GCATC	4 cut(s)	303, 367, 573, 616
SfoI	GGCGCC	1 cut(s)	71
Sse9I	AATT	1 cut(s)	518
SseBI	AGGCCT	1 cut(s)	704
SspDI	GGCGCC	1 cut(s)	69
SspMI	CTAG	1 cut(s)	561
SstI	GAGCTC	2 cut(s)	742, 798
StuI	AGGCCT	1 cut(s)	704
StyD4I	CCNGG	1 cut(s)	809
StyI	CCWWGG	2 cut(s)	410, 673
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	4 cut(s)	200, 285, 621, 717
TasI	AATT	1 cut(s)	518
TauI	GCSGC	7 cut(s)	75, 145, 210, 213, 355, 358, 672
TfiI	GAWTC	2 cut(s)	5, 242
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	2 cut(s)	645, 753
TseFI	GTSAC	2 cut(s)	176, 333
TseI	GCWGC	3 cut(s)	381, 384, 556
Tsp45I	GTSAC	2 cut(s)	176, 333
TspDTI	ATGAA	3 cut(s)	269, 488, 648
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	2 cut(s)	645, 753
VneI	GTGCAC	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	200
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.