Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004473

Physical Location & Seq

Genomic Coordinates Forward (+)

3960743 .. 3962550

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGATTCACTCTCATCGGTAAAAGTGTCGCCCTCCGTAGTCACCAACCCTCTCTCTCCGCGGCGCTGCCGGATGCCTCTTTCTTCTTCTTCGCTCGGCAGCTTACACAATCGAAGTCTCTGCCGATTATCCTCCTCCTCCTCCTCCTCTGTATTCCGTGTACCGTGCCCTCCCTATTCTAGAAGGAGGCTCGTGTGCCGGTCCGGCGGTGGCGGTGGAGCTGCGCAGGAGGAGGAGGACGACGGCGATGACGACGGAAGTGAGCAGGTGGAGAGAGCGCTTCACCTCGATGGTAATATCCCCTCTTCCTCCGACGAGTTCGTGAAACGCGTGTCGTCTCGTGCTTACGACATGCGCCGCCACCTCCATCAGACCTTCGATTCCGGCAGCTACGATGTATTGGAGGCCAACCCCTGGAGAGGAAGTTCCAAGCCTGTGTATGTATTAACGCAAAGGGAAAACCAGTTGTGCACCATGAAAACCCGAAGAAATCGCAGTGAAGTTGAAACGGAGCTTGGGAAATTGTTTTCGAAAGGAGGGAAGTGGAACCAAGCGAAACAGCCTAGGAACGAGACAAAGTTCCAGATGCTTGTGGAGGATATTAGGGATGGAGTGCTTGTTTTCGAGGATGAGAACGAAGCTGTAAGGTACTGTGACTTGTTGCAAGGAGGAGGTAAAGGTTGTGAAGGTGTTGCAGAAATAGAGGCCTCATCGGTATTCGACGTCTGCCAGAAAATGCGAGCTTTTGCAGTTCTATTCCGTCGCGGAATAAGCCCTCCTCTGCCTCAAAGCCTGGAGCTCAACCTTCGGGCTCGAAAGCGCTCGCTTGAAGACGAGCAAAACGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3110

Protein Analysis

283

Amino Acids

31.42

Weight (kDa)

8.1

Isoelectric Point (pI)

77.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13990 AT1G13990 AT1G13990
fragaria_vesca	FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770
malus_domestica	MD13G1068600.v1.1 MD16G1067400.v1.1
prunus_persica	Prupe.1G279300_v2.0.a1
pyrus_communis	pycom13g06040 pycom16g05890
rosa_chinensis	RchiOBHm_Chr4g0439161
rosa_laevigata	RLG00000006292
rosa_multiflora	Rmu_sc0002236.1_g000007 Rmu_sc0027506.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380140
rosa_rugosa	Rorug04G0316300 Rorug04G0316400
rosa_samantha	Rh4AG367100 Rh4BG378700 Rh4CG393000 Rh4DG373300
rosa_wichuraiana	Rw0G011690 Rw5G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	256
AatII	GACGTC	1 cut(s)	726
Acc16I	TGCGCA	1 cut(s)	225
Acc36I	ACCTGC	1 cut(s)	256
AccB7I	CCANNNNNTGG	1 cut(s)	414
AccII	CGCG	4 cut(s)	61, 330, 765, 845
AciI	CCGC	6 cut(s)	59, 61, 207, 213, 358, 765
AcyI	GRCGYC	1 cut(s)	723
AfaI	GTAC	2 cut(s)	162, 650
AfeI	AGCGCT	2 cut(s)	279, 821
AfiI	CCNNNNNNNGG	2 cut(s)	414, 419
AflIII	ACRYGT	2 cut(s)	328, 843
AgsI	TTSAA	2 cut(s)	506, 830
AjnI	CCWGG	2 cut(s)	413, 792
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AloI	GAACNNNNNNTCC	2 cut(s)	409, 441
AluBI	AGCT	7 cut(s)	102, 221, 390, 514, 641, 743, 799
AluI	AGCT	7 cut(s)	102, 221, 390, 514, 641, 743, 799
Alw21I	GWGCWC	2 cut(s)	473, 801
Alw26I	GTCTC	3 cut(s)	122, 342, 566
Alw44I	GTGCAC	1 cut(s)	469
Aor51HI	AGCGCT	2 cut(s)	279, 821
AoxI	GGCC	2 cut(s)	405, 705
ApaLI	GTGCAC	1 cut(s)	469
ApeKI	GCWGC	4 cut(s)	66, 99, 221, 387
AspA2I	CCTAGG	1 cut(s)	563
AspLEI	GCGC	5 cut(s)	66, 226, 280, 357, 822
AspS9I	GGNCC	1 cut(s)	201
AsuHPI	GGTGA	2 cut(s)	34, 275
AsuII	TTCGAA	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	201
AvrII	CCTAGG	1 cut(s)	563
BaeGI	GKGCMC	2 cut(s)	170, 473
BanII	GRGCYC	2 cut(s)	801, 814
BauI	CACGAG	2 cut(s)	191, 339
BbsI	GAAGAC	1 cut(s)	837
Bbv12I	GWGCWC	2 cut(s)	473, 801
BbvI	GCAGC	4 cut(s)	53, 111, 208, 399
BccI	CCATC	3 cut(s)	284, 375, 602
BceAI	ACGGC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciT130I	CCWGG	2 cut(s)	415, 794
BcoDI	GTCTC	3 cut(s)	122, 342, 566
BfaI	CTAG	2 cut(s)	180, 564
BfoI	RGCGCY	3 cut(s)	67, 281, 823
BfuAI	ACCTGC	1 cut(s)	256
BglI	GCCNNNNNGGC	1 cut(s)	204
BisI	GCNGC	6 cut(s)	62, 67, 100, 222, 358, 388
BlnI	CCTAGG	1 cut(s)	563
BlsI	GCNGC	6 cut(s)	63, 68, 101, 223, 359, 389
Bme1390I	CCNGG	2 cut(s)	415, 794
Bme18I	GGWCC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	548
BmrFI	CCNGG	2 cut(s)	415, 794
BmsI	GCATC	2 cut(s)	63, 576
BpiI	GAAGAC	1 cut(s)	837
BpmI	CTGGAG	2 cut(s)	436, 815
Bpu14I	TTCGAA	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	723
BsaJI	CCNNGG	3 cut(s)	59, 413, 563
BsaXI	ACNNNNNCTCC	4 cut(s)	409, 439, 603, 633
Bsc4I	CCNNNNNNNGG	2 cut(s)	414, 419
Bse118I	RCCGGY	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	463
BseBI	CCWGG	2 cut(s)	415, 794
BseDI	CCNNGG	3 cut(s)	59, 413, 563
BseGI	GGATG	3 cut(s)	78, 613, 634
BseLI	CCNNNNNNNGG	2 cut(s)	414, 419
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	9 cut(s)	124, 127, 130, 133, 136, 245, 248, 684, 768
BseSI	GKGCMC	2 cut(s)	170, 473
BseXI	GCAGC	4 cut(s)	53, 111, 208, 399
Bsh1236I	CGCG	4 cut(s)	61, 330, 765, 845
BshFI	GGCC	2 cut(s)	407, 707
BsiHKAI	GWGCWC	2 cut(s)	473, 801
BsiSI	CCGG	4 cut(s)	70, 199, 204, 384
BslI	CCNNNNNNNGG	2 cut(s)	414, 419
BsmAI	GTCTC	3 cut(s)	122, 342, 566
BsmBI	CGTCTC	1 cut(s)	342
BsnI	GGCC	2 cut(s)	407, 707
Bsp119I	TTCGAA	1 cut(s)	530
Bsp1286I	GDGCHC	4 cut(s)	170, 473, 801, 814
BspACI	CCGC	6 cut(s)	59, 61, 207, 213, 358, 765
BspANI	GGCC	2 cut(s)	407, 707
BspFNI	CGCG	4 cut(s)	61, 330, 765, 845
BspLI	GGNNCC	1 cut(s)	548
BspMI	ACCTGC	1 cut(s)	256
BspT104I	TTCGAA	1 cut(s)	530
BsrFI	RCCGGY	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	463
BssAI	RCCGGY	1 cut(s)	198
BssECI	CCNNGG	3 cut(s)	59, 413, 563
BssNI	GRCGYC	1 cut(s)	723
BssSI	CACGAG	2 cut(s)	191, 339
BssT1I	CCWWGG	1 cut(s)	563
Bst2BI	CACGAG	2 cut(s)	191, 339
Bst2UI	CCWGG	2 cut(s)	415, 794
Bst4CI	ACNGT	2 cut(s)	165, 653
Bst6I	CTCTTC	1 cut(s)	310
BstACI	GRCGYC	1 cut(s)	723
BstBI	TTCGAA	1 cut(s)	530
BstC8I	GCNNGC	2 cut(s)	741, 824
BstDSI	CCRYGG	1 cut(s)	59
BstF5I	GGATG	3 cut(s)	78, 613, 634
BstFNI	CGCG	4 cut(s)	61, 330, 765, 845
BstH2I	RGCGCY	3 cut(s)	67, 281, 823
BstHHI	GCGC	5 cut(s)	66, 226, 280, 357, 822
BstMAI	GTCTC	3 cut(s)	122, 342, 566
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 771
BstNI	CCWGG	2 cut(s)	415, 794
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	2 cut(s)	413, 792
BstSLI	GKGCMC	2 cut(s)	170, 473
BstUI	CGCG	4 cut(s)	61, 330, 765, 845
BstV1I	GCAGC	4 cut(s)	53, 111, 208, 399
BstV2I	GAAGAC	1 cut(s)	837
BsuRI	GGCC	2 cut(s)	407, 707
BtgI	CCRYGG	1 cut(s)	59
BtgZI	GCGATG	1 cut(s)	261
BtsCI	GGATG	3 cut(s)	78, 613, 634
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	1 cut(s)	502
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	741, 824
CfoI	GCGC	5 cut(s)	66, 226, 280, 357, 822
Cfr10I	RCCGGY	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	201
Cfr42I	CCGCGG	1 cut(s)	62
CpoI	CGGWCCG	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	161, 649
CspI	CGGWCCG	1 cut(s)	201
CviAII	CATG	2 cut(s)	352, 475
CviQI	GTAC	2 cut(s)	161, 649
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Ecl136II	GAGCTC	1 cut(s)	799
Eco130I	CCWWGG	1 cut(s)	563
Eco147I	AGGCCT	1 cut(s)	707
Eco24I	GRGCYC	2 cut(s)	801, 814
Eco47I	GGWCC	1 cut(s)	201
Eco47III	AGCGCT	2 cut(s)	279, 821
Eco53kI	GAGCTC	1 cut(s)	799
EcoICRI	GAGCTC	1 cut(s)	799
EcoRII	CCWGG	2 cut(s)	413, 792
EcoT14I	CCWWGG	1 cut(s)	563
EcoT38I	GRGCYC	2 cut(s)	801, 814
ErhI	CCWWGG	1 cut(s)	563
Esp3I	CGTCTC	1 cut(s)	342
FaeI	CATG	2 cut(s)	355, 478
FaiI	YATR	3 cut(s)	353, 441, 476
FatI	CATG	2 cut(s)	351, 474
Fnu4HI	GCNGC	6 cut(s)	62, 67, 100, 222, 358, 388
FokI	GGATG	3 cut(s)	85, 620, 641
FriOI	GRGCYC	2 cut(s)	801, 814
Fsp4HI	GCNGC	6 cut(s)	62, 67, 100, 222, 358, 388
FspBI	CTAG	2 cut(s)	180, 564
FspI	TGCGCA	1 cut(s)	225
GlaI	GCGC	5 cut(s)	65, 225, 279, 356, 821
GluI	GCNGC	6 cut(s)	62, 67, 100, 222, 358, 388
GsuI	CTGGAG	2 cut(s)	436, 815
HaeII	RGCGCY	3 cut(s)	67, 281, 823
HaeIII	GGCC	2 cut(s)	407, 707
HapII	CCGG	4 cut(s)	70, 199, 204, 384
HhaI	GCGC	5 cut(s)	66, 226, 280, 357, 822
Hin1I	GRCGYC	1 cut(s)	723
Hin1II	CATG	2 cut(s)	355, 478
Hin6I	GCGC	5 cut(s)	64, 224, 278, 355, 820
HinP1I	GCGC	5 cut(s)	64, 224, 278, 355, 820
HinfI	GANTC	2 cut(s)	5, 380
HpaII	CCGG	4 cut(s)	70, 199, 204, 384
HphI	GGTGA	2 cut(s)	34, 275
Hpy166II	GTNNAC	2 cut(s)	161, 471
Hpy188I	TCNGA	2 cut(s)	313, 372
Hpy188III	TCNNGA	3 cut(s)	180, 322, 583
Hpy8I	GTNNAC	2 cut(s)	161, 471
Hpy99I	CGWCG	5 cut(s)	245, 257, 317, 725, 765
HpyAV	CCTTC	4 cut(s)	177, 385, 680, 815
HpyCH4III	ACNGT	2 cut(s)	165, 653
HpyCH4IV	ACGT	1 cut(s)	723
HpyCH4V	TGCA	4 cut(s)	471, 664, 695, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 771
HpySE526I	ACGT	1 cut(s)	723
Hsp92I	GRCGYC	1 cut(s)	723
Hsp92II	CATG	2 cut(s)	355, 478
HspAI	GCGC	5 cut(s)	64, 224, 278, 355, 820
KspI	CCGCGG	1 cut(s)	62
LmnI	GCTCC	3 cut(s)	218, 511, 796
Lsp1109I	GCAGC	4 cut(s)	53, 111, 208, 399
LweI	GCATC	2 cut(s)	63, 576
MaeI	CTAG	2 cut(s)	180, 564
MaeII	ACGT	1 cut(s)	723
MaeIII	GTNAC	2 cut(s)	40, 653
MboII	GAAGA	6 cut(s)	75, 78, 81, 297, 498, 842
MhlI	GDGCHC	4 cut(s)	170, 473, 801, 814
MluCI	AATT	1 cut(s)	521
MluI	ACGCGT	2 cut(s)	328, 843
MmeI	TCCRAC	1 cut(s)	336
MseI	TTAA	1 cut(s)	446
MslI	CAYNNNNRTG	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	4 cut(s)	70, 199, 204, 384
MspR9I	CCNGG	2 cut(s)	415, 794
MvaI	CCWGG	2 cut(s)	415, 794
MvnI	CGCG	4 cut(s)	61, 330, 765, 845
MwoI	GCNNNNNNNGC	2 cut(s)	204, 771
NlaIII	CATG	2 cut(s)	355, 478
NlaIV	GGNNCC	1 cut(s)	548
NmeAIII	GCCGAG	1 cut(s)	75
NmuCI	GTSAC	2 cut(s)	40, 653
NsbI	TGCGCA	1 cut(s)	225
NspI	RCATGY	1 cut(s)	355
NspV	TTCGAA	1 cut(s)	530
PaqCI	CACCTGC	1 cut(s)	256
PceI	AGGCCT	1 cut(s)	707
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 327
PfeI	GAWTC	2 cut(s)	5, 380
PflMI	CCANNNNNTGG	1 cut(s)	414
PkrI	GCNGC	6 cut(s)	63, 68, 101, 223, 359, 389
Psp124BI	GAGCTC	1 cut(s)	801
Psp6I	CCWGG	2 cut(s)	413, 792
PspGI	CCWGG	2 cut(s)	413, 792
PspN4I	GGNNCC	1 cut(s)	548
PspPI	GGNCC	1 cut(s)	201
RsaI	GTAC	2 cut(s)	162, 650
RsaNI	GTAC	2 cut(s)	161, 649
RseI	CAYNNNNRTG	1 cut(s)	288
Rsr2I	CGGWCCG	1 cut(s)	201
RsrII	CGGWCCG	1 cut(s)	201
SacI	GAGCTC	1 cut(s)	801
SacII	CCGCGG	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	6 cut(s)	62, 67, 100, 222, 358, 388
Sau96I	GGNCC	1 cut(s)	201
ScrFI	CCNGG	2 cut(s)	415, 794
SduI	GDGCHC	4 cut(s)	170, 473, 801, 814
SfaNI	GCATC	2 cut(s)	63, 576
Sfr303I	CCGCGG	1 cut(s)	62
SfuI	TTCGAA	1 cut(s)	530
SgrBI	CCGCGG	1 cut(s)	62
SinI	GGWCC	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	1 cut(s)	521
SseBI	AGGCCT	1 cut(s)	707
SsiI	CCGC	6 cut(s)	59, 61, 207, 213, 358, 765
SspMI	CTAG	2 cut(s)	180, 564
SstI	GAGCTC	1 cut(s)	801
StuI	AGGCCT	1 cut(s)	707
StyD4I	CCNGG	2 cut(s)	413, 792
StyI	CCWWGG	1 cut(s)	563
TaaI	ACNGT	2 cut(s)	165, 653
TaiI	ACGT	1 cut(s)	726
TaqI	TCGA	7 cut(s)	112, 288, 378, 530, 624, 720, 814
TasI	AATT	1 cut(s)	521
TauI	GCSGC	2 cut(s)	64, 360
TfiI	GAWTC	2 cut(s)	5, 380
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	2 cut(s)	40, 653
TseI	GCWGC	4 cut(s)	66, 99, 221, 387
Tsp45I	GTSAC	2 cut(s)	40, 653
TspDTI	ATGAA	1 cut(s)	491
TspGWI	ACGGA	5 cut(s)	25, 146, 270, 524, 749
TspRI	CASTG	1 cut(s)	502
Van91I	CCANNNNNTGG	1 cut(s)	414
VneI	GTGCAC	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	201
XbaI	TCTAGA	1 cut(s)	179
XceI	RCATGY	1 cut(s)	355
XmaJI	CCTAGG	1 cut(s)	563
XspI	CTAG	2 cut(s)	180, 564
ZraI	GACGTC	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.