Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004473

Physical Location & Seq

Genomic Coordinates Forward (+)

64258565 .. 64260021

Gene Structure 1457 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG393000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGATTCCCTCTCATCGGTTTCGCCCTCCATAATCCTCCCTCCGACCGCCAACCCTCTCCGTCCGCGGCGCCGCCGGATGAGTTTCTCTCCGTTCAGCCTACGCAACCGCAACCTCTGCCTGTACTCTGTTTTCCGAGTGCCGCGCTCTCCCGATCTCTCCAGAAGGCGGTTCGGTCTCAGAGAAGCTTCCTGCAGGTCGGCCGGCGACGGAGGAGGAGGAGGAGGAGCTGGGGCAAATCAGGAGGAAGAGGATTCCGACGACGAAAGTGAGCAGGTGGAGAGGGCCCTTCACCTCGACGGCAGTATTCCTTCTACTTCCGATGAGTTTGTGAAGCGCGTGTCGTCACGCGCTTACGATATGCGGCGGCACCTCCAGCAGACCTTCGATAGCAGCAGCTATGATGTGTTGGAGGCTAATCCTTGGAGAGAAACTTCCAAGCCTGTATATGTATTAACTCAGAGGGAGAACCAGCTGTGCACAATGAAAACACGAAGAAATGTCAGTGAAGTTGAAAGGGAGCTTGGGCAATTGTTTTCCAAAGGAGGAAAGTGGAGCCAAGCTAAACAGCCCAGAAATGGTAACAAGTTCCAGATGCTTGTTGAGGATATTAGGGATGGCGTGCTTGTTTTCGAGGATGCAAATGAAGCAGTGAAGTACTGTGATTTGTTGCAAGGAGGCGGCCAAGGTTGTGAAGGTGTTGCAGAAATAGAGGCCTCATCAGTATTTGCTCTGTGCCAGAAAATGAGAGGTCTAGCGGTTCTGTTTCGTCGCGGAAGAAAGCCTCCGTTGCCTCAGAGCTTGGAGCTCAACCTTAGGGCCAGGAAGCGCTCCCTTGAAGACCAACAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3110

Protein Analysis

284

Amino Acids

31.95

Weight (kDa)

8.93

Isoelectric Point (pI)

82.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13990 AT1G13990 AT1G13990
fragaria_vesca	FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770
malus_domestica	MD13G1068600.v1.1 MD16G1067400.v1.1
prunus_persica	Prupe.1G279300_v2.0.a1
pyrus_communis	pycom13g06040 pycom16g05890
rosa_chinensis	RchiOBHm_Chr4g0439161
rosa_laevigata	RLG00000006292
rosa_multiflora	Rmu_sc0002236.1_g000007 Rmu_sc0027506.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380140
rosa_rugosa	Rorug04G0316300 Rorug04G0316400
rosa_samantha	Rh4AG367100 Rh4BG378700 Rh4CG393000 Rh4DG373300
rosa_wichuraiana	Rw0G011690 Rw5G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	2 cut(s)	186, 265
AccB1I	GGYRCC	2 cut(s)	69, 369
AccII	CGCG	5 cut(s)	67, 145, 339, 351, 774
AcoI	YGGCCR	2 cut(s)	201, 682
AcyI	GRCGYC	1 cut(s)	70
AfaI	GTAC	2 cut(s)	125, 659
AfeI	AGCGCT	1 cut(s)	830
AfiI	CCNNNNNNNGG	3 cut(s)	16, 168, 578
AgsI	TTSAA	2 cut(s)	515, 839
AjnI	CCWGG	1 cut(s)	821
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	8 cut(s)	188, 230, 399, 475, 523, 563, 801, 808
AluI	AGCT	8 cut(s)	188, 230, 399, 475, 523, 563, 801, 808
Alw21I	GWGCWC	2 cut(s)	482, 810
Alw26I	GTCTC	1 cut(s)	182
Alw44I	GTGCAC	1 cut(s)	478
Aor51HI	AGCGCT	1 cut(s)	830
AoxI	GGCC	5 cut(s)	201, 285, 682, 714, 819
ApaI	GGGCCC	1 cut(s)	289
ApaLI	GTGCAC	1 cut(s)	478
ApeKI	GCWGC	2 cut(s)	393, 396
AspLEI	GCGC	5 cut(s)	72, 147, 339, 353, 831
AspS9I	GGNCC	3 cut(s)	285, 286, 819
AsuHPI	GGTGA	1 cut(s)	284
AxyI	CCTNAGG	1 cut(s)	815
BaeGI	GKGCMC	2 cut(s)	289, 482
BanI	GGYRCC	2 cut(s)	69, 369
BanII	GRGCYC	2 cut(s)	289, 810
BbsI	GAAGAC	1 cut(s)	846
Bbv12I	GWGCWC	2 cut(s)	482, 810
BbvI	GCAGC	2 cut(s)	405, 408
BccI	CCATC	1 cut(s)	611
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	823
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	755
BfmI	CTRYAG	1 cut(s)	193
BfoI	RGCGCY	2 cut(s)	73, 832
BfuAI	ACCTGC	2 cut(s)	186, 265
BisI	GCNGC	8 cut(s)	68, 73, 143, 365, 368, 394, 397, 682
BlsI	GCNGC	8 cut(s)	69, 74, 144, 366, 369, 395, 398, 683
BmcAI	AGTACT	1 cut(s)	659
Bme1390I	CCNGG	1 cut(s)	823
BmgT120I	GGNCC	3 cut(s)	285, 286, 819
BmiI	GGNNCC	4 cut(s)	71, 287, 371, 557
BmrFI	CCNGG	1 cut(s)	823
BmsI	GCATC	2 cut(s)	585, 628
BpiI	GAAGAC	1 cut(s)	846
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
BpmI	CTGGAG	2 cut(s)	145, 359
BsaHI	GRCGYC	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	3 cut(s)	65, 422, 685
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 168, 578
Bse118I	RCCGGY	1 cut(s)	203
Bse21I	CCTNAGG	1 cut(s)	815
BseBI	CCWGG	1 cut(s)	823
BseDI	CCNNGG	3 cut(s)	65, 422, 685
BseGI	GGATG	3 cut(s)	84, 622, 643
BseLI	CCNNNNNNNGG	3 cut(s)	16, 168, 578
BseMII	CTCAG	3 cut(s)	193, 473, 809
BseRI	GAGGAG	5 cut(s)	228, 231, 234, 237, 240
BseSI	GKGCMC	2 cut(s)	289, 482
BseX3I	CGGCCG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	405, 408
BseYI	CCCAGC	1 cut(s)	230
Bsh1236I	CGCG	5 cut(s)	67, 145, 339, 351, 774
Bsh1285I	CGRYCG	2 cut(s)	48, 204
BshFI	GGCC	5 cut(s)	203, 287, 684, 716, 821
BshNI	GGYRCC	2 cut(s)	69, 369
BsiEI	CGRYCG	2 cut(s)	48, 204
BsiHKAI	GWGCWC	2 cut(s)	482, 810
BsiSI	CCGG	2 cut(s)	76, 204
BslI	CCNNNNNNNGG	3 cut(s)	16, 168, 578
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	5 cut(s)	203, 287, 684, 716, 821
Bso31I	GGTCTC	1 cut(s)	182
Bsp120I	GGGCCC	1 cut(s)	285
Bsp1286I	GDGCHC	3 cut(s)	289, 482, 810
Bsp143I	GATC	1 cut(s)	154
BspANI	GGCC	5 cut(s)	203, 287, 684, 716, 821
BspCNI	CTCAG	3 cut(s)	192, 472, 808
BspFNI	CGCG	5 cut(s)	67, 145, 339, 351, 774
BspLI	GGNNCC	4 cut(s)	71, 287, 371, 557
BspMAI	CTGCAG	1 cut(s)	197
BspMI	ACCTGC	2 cut(s)	186, 265
BspT107I	GGYRCC	2 cut(s)	69, 369
BspTNI	GGTCTC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	65, 422, 685
BssMI	GATC	1 cut(s)	154
BssNI	GRCGYC	1 cut(s)	70
BssT1I	CCWWGG	2 cut(s)	422, 685
Bst2UI	CCWGG	1 cut(s)	823
Bst4CI	ACNGT	1 cut(s)	662
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	205, 623
BstDEI	CTNAG	4 cut(s)	179, 459, 795, 815
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	3 cut(s)	84, 622, 643
BstFNI	CGCG	5 cut(s)	67, 145, 339, 351, 774
BstH2I	RGCGCY	2 cut(s)	73, 832
BstHHI	GCGC	5 cut(s)	72, 147, 339, 353, 831
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	154
BstMCI	CGRYCG	2 cut(s)	48, 204
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 376, 647, 790
BstNI	CCWGG	1 cut(s)	823
BstSCI	CCNGG	1 cut(s)	821
BstSFI	CTRYAG	1 cut(s)	193
BstSLI	GKGCMC	2 cut(s)	289, 482
BstUI	CGCG	5 cut(s)	67, 145, 339, 351, 774
BstV1I	GCAGC	2 cut(s)	405, 408
BstV2I	GAAGAC	1 cut(s)	846
BstZI	CGGCCG	1 cut(s)	201
Bsu36I	CCTNAGG	1 cut(s)	815
BsuRI	GGCC	5 cut(s)	203, 287, 684, 716, 821
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	84, 622, 643
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	2 cut(s)	511, 657
BveI	ACCTGC	2 cut(s)	186, 265
Cac8I	GCNNGC	2 cut(s)	205, 623
CfoI	GCGC	5 cut(s)	72, 147, 339, 353, 831
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	3 cut(s)	285, 286, 819
Cfr42I	CCGCGG	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	124, 658
CviQI	GTAC	2 cut(s)	124, 658
DdeI	CTNAG	4 cut(s)	179, 459, 795, 815
DinI	GGCGCC	1 cut(s)	71
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
EaeI	YGGCCR	2 cut(s)	201, 682
EagI	CGGCCG	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Ecl136II	GAGCTC	1 cut(s)	808
EclXI	CGGCCG	1 cut(s)	201
Eco130I	CCWWGG	2 cut(s)	422, 685
Eco147I	AGGCCT	1 cut(s)	716
Eco24I	GRGCYC	2 cut(s)	289, 810
Eco31I	GGTCTC	1 cut(s)	182
Eco47III	AGCGCT	1 cut(s)	830
Eco52I	CGGCCG	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	808
Eco81I	CCTNAGG	1 cut(s)	815
EcoICRI	GAGCTC	1 cut(s)	808
EcoO109I	RGGNCCY	2 cut(s)	285, 286
EcoRII	CCWGG	1 cut(s)	821
EcoT14I	CCWWGG	2 cut(s)	422, 685
EcoT38I	GRGCYC	2 cut(s)	289, 810
EgeI	GGCGCC	1 cut(s)	71
EheI	GGCGCC	1 cut(s)	71
ErhI	CCWWGG	2 cut(s)	422, 685
FaiI	YATR	5 cut(s)	32, 362, 402, 448, 450
Fnu4HI	GCNGC	8 cut(s)	68, 73, 143, 365, 368, 394, 397, 682
FokI	GGATG	3 cut(s)	91, 629, 650
FriOI	GRGCYC	2 cut(s)	289, 810
Fsp4HI	GCNGC	8 cut(s)	68, 73, 143, 365, 368, 394, 397, 682
FspBI	CTAG	1 cut(s)	755
GlaI	GCGC	5 cut(s)	71, 146, 338, 352, 830
GluI	GCNGC	8 cut(s)	68, 73, 143, 365, 368, 394, 397, 682
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	2 cut(s)	145, 359
HaeII	RGCGCY	2 cut(s)	73, 832
HaeIII	GGCC	5 cut(s)	203, 287, 684, 716, 821
HapII	CCGG	2 cut(s)	76, 204
HhaI	GCGC	5 cut(s)	72, 147, 339, 353, 831
Hin1I	GRCGYC	1 cut(s)	70
Hin6I	GCGC	5 cut(s)	70, 145, 337, 351, 829
HinP1I	GCGC	5 cut(s)	70, 145, 337, 351, 829
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	2 cut(s)	5, 254
HpaII	CCGG	2 cut(s)	76, 204
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188I	TCNGA	7 cut(s)	45, 137, 182, 259, 322, 462, 798
Hpy188III	TCNNGA	4 cut(s)	152, 162, 242, 592
Hpy8I	GTNNAC	1 cut(s)	480
Hpy99I	CGWCG	5 cut(s)	212, 263, 266, 302, 774
HpyAV	CCTTC	5 cut(s)	159, 299, 321, 394, 689
HpyCH4III	ACNGT	1 cut(s)	662
HpyCH4V	TGCA	5 cut(s)	195, 480, 641, 673, 704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 376, 647, 790
HpyF3I	CTNAG	4 cut(s)	179, 459, 795, 815
Hsp92I	GRCGYC	1 cut(s)	70
HspAI	GCGC	5 cut(s)	70, 145, 337, 351, 829
KasI	GGCGCC	1 cut(s)	69
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
KspI	CCGCGG	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	5 cut(s)	227, 520, 555, 805, 836
Lsp1109I	GCAGC	2 cut(s)	405, 408
LweI	GCATC	2 cut(s)	585, 628
MaeI	CTAG	1 cut(s)	755
MaeIII	GTNAC	2 cut(s)	345, 581
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	4 cut(s)	260, 507, 789, 851
MfeI	CAATTG	1 cut(s)	530
MhlI	GDGCHC	3 cut(s)	289, 482, 810
MluCI	AATT	1 cut(s)	530
Mly113I	GGCGCC	1 cut(s)	70
MmeI	TCCRAC	3 cut(s)	68, 282, 390
MroNI	GCCGGC	1 cut(s)	203
MseI	TTAA	1 cut(s)	455
MspA1I	CMGCKG	2 cut(s)	67, 475
MspI	CCGG	2 cut(s)	76, 204
MspR9I	CCNGG	1 cut(s)	823
MunI	CAATTG	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	823
MvnI	CGCG	5 cut(s)	67, 145, 339, 351, 774
MwoI	GCNNNNNNNGC	4 cut(s)	117, 376, 647, 790
NaeI	GCCGGC	1 cut(s)	205
NarI	GGCGCC	1 cut(s)	70
NdeII	GATC	1 cut(s)	154
NgoMIV	GCCGGC	1 cut(s)	203
NlaIV	GGNNCC	4 cut(s)	71, 287, 371, 557
NmuCI	GTSAC	1 cut(s)	345
PaqCI	CACCTGC	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	716
PdiI	GCCGGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	5, 254
PkrI	GCNGC	8 cut(s)	69, 74, 144, 366, 369, 395, 398, 683
PluTI	GGCGCC	1 cut(s)	73
Psp124BI	GAGCTC	1 cut(s)	810
Psp6I	CCWGG	1 cut(s)	821
PspFI	CCCAGC	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	821
PspN4I	GGNNCC	4 cut(s)	71, 287, 371, 557
PspOMI	GGGCCC	1 cut(s)	285
PspPI	GGNCC	3 cut(s)	285, 286, 819
PstI	CTGCAG	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	475
RsaI	GTAC	2 cut(s)	125, 659
RsaNI	GTAC	2 cut(s)	124, 658
SacI	GAGCTC	1 cut(s)	810
SacII	CCGCGG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	8 cut(s)	68, 73, 143, 365, 368, 394, 397, 682
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	3 cut(s)	285, 286, 819
SbfI	CCTGCAGG	1 cut(s)	197
ScaI	AGTACT	1 cut(s)	659
ScrFI	CCNGG	1 cut(s)	823
SdaI	CCTGCAGG	1 cut(s)	197
SduI	GDGCHC	3 cut(s)	289, 482, 810
SfaNI	GCATC	2 cut(s)	585, 628
SfcI	CTRYAG	1 cut(s)	193
SfoI	GGCGCC	1 cut(s)	71
Sfr303I	CCGCGG	1 cut(s)	68
SgrBI	CCGCGG	1 cut(s)	68
Sse8387I	CCTGCAGG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	530
SseBI	AGGCCT	1 cut(s)	716
SspDI	GGCGCC	1 cut(s)	69
SspMI	CTAG	1 cut(s)	755
SstI	GAGCTC	1 cut(s)	810
StuI	AGGCCT	1 cut(s)	716
StyD4I	CCNGG	1 cut(s)	821
StyI	CCWWGG	2 cut(s)	422, 685
TaaI	ACNGT	1 cut(s)	662
TaqI	TCGA	3 cut(s)	297, 387, 633
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	1 cut(s)	530
TatI	WGTACW	2 cut(s)	123, 657
TauI	GCSGC	6 cut(s)	70, 75, 145, 367, 370, 684
TfiI	GAWTC	2 cut(s)	5, 254
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TscAI	CASTG	2 cut(s)	511, 657
TseFI	GTSAC	1 cut(s)	345
TseI	GCWGC	2 cut(s)	393, 396
Tsp45I	GTSAC	1 cut(s)	345
TspDTI	ATGAA	2 cut(s)	500, 660
TspGWI	ACGGA	4 cut(s)	50, 81, 225, 777
TspRI	CASTG	2 cut(s)	511, 657
VneI	GTGCAC	1 cut(s)	478
XspI	CTAG	1 cut(s)	755
ZrmI	AGTACT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.