Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004473

Physical Location & Seq

Genomic Coordinates Reverse (-)

49068961 .. 49072264

Gene Structure 3304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0316300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTTGGCCGAGAATTCAAGCGACCAAGAAGACCTTCTTCTCAAACAGGTGAAGGCCTTTTACGAATCGAAAGCTGGTGTGAAAGGGCTCGTCGATGCAGGAATCACGAAAATCCCACAAATTTTCATCCATCAGCCAATACATCCCAGCCAAGTAACCCAAACCGAGTTCAGTATTCCAGTGGTGGACCTCGCTGACGCCGCGGTTGGCATGAGCAGGCATGCGGAGGTGGCTGAGGGAGTCCGGCGGGCTGCGGAGACTGTGGGGTTGTTCCTGGTGGTGAACCATGGGATACCTAAGAGAGTATTGGAGGAGATGCTGCAGGCGATCCGTGGGTTTCATGAGCTGCCCAAGGAAGTGAAAGCTCACTACTATAGTATAGACCCCAAGAGGAAGGTCAAGTCTGCTGGTAGCCATAAGCTCGGTAAACCAACTTCTCTACCATGGAGGGACTCTTTGTTATGTGACATGATTTCTGAGCCTCTTGATCCTCAAGAATTGCCTGAGATTTGCAGAGACATAACTATGGAGTACTTAAAACGTGTTCACAAATTAGGTGTCACTTTATTTGAATTGCTATCTGAGGGACTGGGGCTCAAACCTGACCACCTTCTGGGCTTGGGCTGTGCAAATGGACATTTGATTGCTGGTCATTACTATCCACCATGCCCTGAGCCTGAATTGACCATCAACAATGGTCAACACACAGATCTCGGTTTTCTCAGCATCGTACTTCAAGACAATATCAATGCACTCCTTTCGTATCAAAACCAGTGGATTGATGTCCCCACCGTGCCCGGAGCTCTCGTGGTGAATATTGGAGATTTCTTGCAGCTACTCTCAAACAATAAATACATAAGCGTCATGCATAGAGTACTTGCCAAGAAGGAAGGTCCAAGAGTTTCTGTGGGATGTTTTTTCAATCACATTCCACAAGAAAATTCTGCAGGGAGACTCTTGGAGCCGATTAAGGAATTGATATCAGAAAAAAATCCCCCAATATACCGTGGAACAAGTGCGATAGATTATATAGGCCACTACAGGAAAGCGTTGATCAATGGGGTGTGTGGACTCGAATATTTGAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3110

Protein Analysis

363

Amino Acids

40.25

Weight (kDa)

6.43

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	59 - 157	9.9e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	214 - 308	1.3e-26	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13990 AT1G13990 AT1G13990
fragaria_vesca	FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770
malus_domestica	MD13G1068600.v1.1 MD16G1067400.v1.1
prunus_persica	Prupe.1G279300_v2.0.a1
pyrus_communis	pycom13g06040 pycom16g05890
rosa_chinensis	RchiOBHm_Chr4g0439161
rosa_laevigata	RLG00000006292
rosa_multiflora	Rmu_sc0002236.1_g000007 Rmu_sc0027506.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380140
rosa_rugosa	Rorug04G0316300 Rorug04G0316400
rosa_samantha	Rh4AG367100 Rh4BG378700 Rh4CG393000 Rh4DG373300
rosa_wichuraiana	Rw0G011690 Rw5G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	613
AccII	CGCG	1 cut(s)	203
AciI	CCGC	5 cut(s)	201, 203, 224, 247, 254
AclWI	GGATC	2 cut(s)	322, 482
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	3 cut(s)	13, 120, 940
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	3 cut(s)	533, 732, 876
AfiI	CCNNNNNNNGG	1 cut(s)	613
AflIII	ACRYGT	1 cut(s)	541
AgsI	TTSAA	5 cut(s)	18, 572, 737, 922, 1084
AjnI	CCWGG	1 cut(s)	273
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	7 cut(s)	74, 346, 365, 421, 803, 835, 1087
AluI	AGCT	7 cut(s)	74, 346, 365, 421, 803, 835, 1087
Alw21I	GWGCWC	1 cut(s)	805
Alw26I	GTCTC	3 cut(s)	251, 510, 946
AlwI	GGATC	2 cut(s)	322, 482
AoxI	GGCC	3 cut(s)	6, 54, 1033
ApeKI	GCWGC	4 cut(s)	251, 319, 346, 832
ApoI	RAATTY	3 cut(s)	13, 120, 940
ArsI	GACNNNNNNTTYG	2 cut(s)	543, 575
Asp700I	GAANNNNTTC	1 cut(s)	33
AspS9I	GGNCC	2 cut(s)	187, 893
AsuC2I	CCSGG	1 cut(s)	798
AsuHPI	GGTGA	3 cut(s)	61, 292, 823
AvaII	GGWCC	2 cut(s)	187, 893
BaeGI	GKGCMC	1 cut(s)	798
BanII	GRGCYC	3 cut(s)	90, 597, 805
BarI	GAAGNNNNNNTAC	4 cut(s)	44, 76, 418, 450
BauI	CACGAG	1 cut(s)	806
BbsI	GAAGAC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	805
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	4 cut(s)	238, 306, 333, 844
BccI	CCATC	2 cut(s)	138, 695
BcgI	CGANNNNNNTGC	2 cut(s)	741, 775
BciT130I	CCWGG	1 cut(s)	275
BciVI	GTATCC	1 cut(s)	285
BclI	TGATCA	1 cut(s)	1053
BcnI	CCSGG	1 cut(s)	798
BcoDI	GTCTC	3 cut(s)	251, 510, 946
BfmI	CTRYAG	4 cut(s)	320, 373, 945, 1039
BfuI	GTATCC	1 cut(s)	285
BglII	AGATCT	1 cut(s)	709
BisI	GCNGC	5 cut(s)	201, 252, 320, 347, 833
BlsI	GCNGC	5 cut(s)	202, 253, 321, 348, 834
BmcAI	AGTACT	2 cut(s)	533, 876
Bme1390I	CCNGG	2 cut(s)	275, 798
Bme18I	GGWCC	2 cut(s)	187, 893
BmgT120I	GGNCC	2 cut(s)	187, 893
BmiI	GGNNCC	1 cut(s)	963
BmrFI	CCNGG	2 cut(s)	275, 798
BmrI	ACTGGG	1 cut(s)	599
BmsI	GCATC	3 cut(s)	85, 306, 735
BmuI	ACTGGG	1 cut(s)	599
BpiI	GAAGAC	1 cut(s)	36
Bpu10I	CCTNAGC	2 cut(s)	234, 672
BpuEI	CTTGAG	1 cut(s)	477
BpuMI	CCSGG	1 cut(s)	798
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	6 cut(s)	201, 286, 331, 351, 443, 1006
BsaXI	ACNNNNNCTCC	2 cut(s)	792, 822
Bsc4I	CCNNNNNNNGG	1 cut(s)	613
Bse1I	ACTGG	3 cut(s)	179, 594, 772
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	6 cut(s)	201, 286, 331, 351, 443, 1006
BseGI	GGATG	3 cut(s)	126, 142, 917
BseLI	CCNNNNNNNGG	1 cut(s)	613
BseMII	CTCAG	6 cut(s)	225, 468, 495, 573, 663, 736
BseNI	ACTGG	3 cut(s)	179, 594, 772
BseRI	GAGGAG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	798
BseXI	GCAGC	4 cut(s)	238, 306, 333, 844
BseYI	CCCAGC	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	3 cut(s)	8, 56, 1035
BsiHKAI	GWGCWC	1 cut(s)	805
BsiSI	CCGG	2 cut(s)	244, 798
BslFI	GGGAC	3 cut(s)	464, 600, 770
BslI	CCNNNNNNNGG	1 cut(s)	613
BsmAI	GTCTC	3 cut(s)	251, 510, 946
BsmFI	GGGAC	3 cut(s)	464, 600, 770
BsnI	GGCC	3 cut(s)	8, 56, 1035
Bsp1286I	GDGCHC	4 cut(s)	90, 597, 798, 805
Bsp143I	GATC	4 cut(s)	327, 487, 709, 1053
Bsp19I	CCATGG	2 cut(s)	286, 443
BspACI	CCGC	5 cut(s)	201, 203, 224, 247, 254
BspANI	GGCC	3 cut(s)	8, 56, 1035
BspCNI	CTCAG	6 cut(s)	226, 469, 496, 574, 664, 735
BspFNI	CGCG	1 cut(s)	203
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	963
BspMAI	CTGCAG	2 cut(s)	324, 949
BspPI	GGATC	2 cut(s)	322, 482
BsrI	ACTGG	3 cut(s)	179, 594, 772
BssECI	CCNNGG	6 cut(s)	201, 286, 331, 351, 443, 1006
BssMI	GATC	4 cut(s)	327, 487, 709, 1053
BssNI	GRCGYC	1 cut(s)	198
BssSI	CACGAG	1 cut(s)	806
BssT1I	CCWWGG	3 cut(s)	286, 351, 443
Bst2BI	CACGAG	1 cut(s)	806
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	3 cut(s)	262, 793, 1007
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	4 cut(s)	218, 222, 249, 324
BstDEI	CTNAG	7 cut(s)	234, 297, 477, 504, 582, 672, 722
BstDSI	CCRYGG	5 cut(s)	201, 286, 331, 443, 1006
BstF5I	GGATG	3 cut(s)	126, 142, 917
BstFNI	CGCG	1 cut(s)	203
BstKTI	GATC	4 cut(s)	330, 490, 712, 1056
BstMAI	GTCTC	3 cut(s)	251, 510, 946
BstMBI	GATC	4 cut(s)	327, 487, 709, 1053
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 230
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	2 cut(s)	273, 796
BstSFI	CTRYAG	4 cut(s)	320, 373, 945, 1039
BstSLI	GKGCMC	1 cut(s)	798
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	4 cut(s)	238, 306, 333, 844
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	3 cut(s)	8, 56, 1035
BtgI	CCRYGG	5 cut(s)	201, 286, 331, 443, 1006
BtsCI	GGATG	3 cut(s)	126, 142, 917
BtsIMutI	CAGTG	2 cut(s)	186, 779
Cac8I	GCNNGC	4 cut(s)	218, 222, 249, 324
CciI	TCATGA	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	187, 893
Cfr42I	CCGCGG	1 cut(s)	204
CseI	GACGC	2 cut(s)	206, 850
Csp6I	GTAC	3 cut(s)	532, 731, 875
CspCI	CAANNNNNGTGG	2 cut(s)	755, 790
CviAII	CATG	8 cut(s)	211, 221, 287, 341, 444, 469, 666, 865
CviQI	GTAC	3 cut(s)	532, 731, 875
DdeI	CTNAG	7 cut(s)	234, 297, 477, 504, 582, 672, 722
DpnI	GATC	4 cut(s)	329, 489, 711, 1055
DpnII	GATC	4 cut(s)	327, 487, 709, 1053
EaeI	YGGCCR	1 cut(s)	6
Ecl136II	GAGCTC	1 cut(s)	803
Eco130I	CCWWGG	3 cut(s)	286, 351, 443
Eco147I	AGGCCT	1 cut(s)	56
Eco24I	GRGCYC	3 cut(s)	90, 597, 805
Eco32I	GATATC	1 cut(s)	981
Eco47I	GGWCC	2 cut(s)	187, 893
Eco53kI	GAGCTC	1 cut(s)	803
EcoICRI	GAGCTC	1 cut(s)	803
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	273
EcoRV	GATATC	1 cut(s)	981
EcoT14I	CCWWGG	3 cut(s)	286, 351, 443
EcoT22I	ATGCAT	1 cut(s)	870
EcoT38I	GRGCYC	3 cut(s)	90, 597, 805
ErhI	CCWWGG	3 cut(s)	286, 351, 443
FaeI	CATG	8 cut(s)	214, 224, 290, 344, 447, 472, 669, 868
FalI	AAGNNNNNCTT	4 cut(s)	18, 50, 21, 53
FaqI	GGGAC	3 cut(s)	464, 600, 770
FatI	CATG	8 cut(s)	210, 220, 286, 340, 443, 468, 665, 864
FauI	CCCGC	1 cut(s)	240
FbaI	TGATCA	1 cut(s)	1053
Fnu4HI	GCNGC	5 cut(s)	201, 252, 320, 347, 833
FokI	GGATG	3 cut(s)	113, 129, 924
FriOI	GRGCYC	3 cut(s)	90, 597, 805
Fsp4HI	GCNGC	5 cut(s)	201, 252, 320, 347, 833
GluI	GCNGC	5 cut(s)	201, 252, 320, 347, 833
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	3 cut(s)	8, 56, 1035
HapII	CCGG	2 cut(s)	244, 798
HgaI	GACGC	2 cut(s)	206, 850
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	8 cut(s)	214, 224, 290, 344, 447, 472, 669, 868
HincII	GTYRAC	1 cut(s)	701
HindII	GTYRAC	1 cut(s)	701
HinfI	GANTC	6 cut(s)	65, 102, 240, 452, 954, 1071
HpaII	CCGG	2 cut(s)	244, 798
HphI	GGTGA	3 cut(s)	61, 292, 823
Hpy166II	GTNNAC	6 cut(s)	187, 283, 428, 547, 701, 1070
Hpy188I	TCNGA	3 cut(s)	478, 583, 985
Hpy188III	TCNNGA	5 cut(s)	106, 341, 485, 494, 737
Hpy8I	GTNNAC	6 cut(s)	187, 283, 428, 547, 701, 1070
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	6 cut(s)	44, 46, 388, 620, 880, 884
HpyCH4III	ACNGT	3 cut(s)	262, 793, 1007
HpyCH4IV	ACGT	1 cut(s)	541
HpyCH4V	TGCA	8 cut(s)	98, 322, 513, 629, 752, 832, 868, 947
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 230
HpyF3I	CTNAG	7 cut(s)	234, 297, 477, 504, 582, 672, 722
HpySE526I	ACGT	1 cut(s)	541
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	8 cut(s)	214, 224, 290, 344, 447, 472, 669, 868
Ksp22I	TGATCA	1 cut(s)	1053
KspI	CCGCGG	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	327, 487, 709, 1053
LmnI	GCTCC	2 cut(s)	800, 961
Lsp1109I	GCAGC	4 cut(s)	238, 306, 333, 844
LweI	GCATC	3 cut(s)	85, 306, 735
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	3 cut(s)	154, 464, 559
MalI	GATC	4 cut(s)	329, 489, 711, 1055
MboI	GATC	4 cut(s)	327, 487, 709, 1053
MboII	GAAGA	2 cut(s)	29, 41
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	4 cut(s)	90, 597, 798, 805
MluCI	AATT	8 cut(s)	13, 120, 497, 551, 572, 680, 940, 974
MlyI	GAGTC	4 cut(s)	249, 446, 948, 1065
MnlI	CCTC	9 cut(s)	200, 220, 229, 304, 384, 441, 492, 501, 577
Mph1103I	ATGCAT	1 cut(s)	870
MroXI	GAANNNNTTC	1 cut(s)	33
MseI	TTAA	2 cut(s)	536, 969
MslI	CAYNNNNRTG	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	2 cut(s)	244, 798
MspR9I	CCNGG	2 cut(s)	275, 798
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	200, 230
NciI	CCSGG	1 cut(s)	798
NcoI	CCATGG	2 cut(s)	286, 443
NdeII	GATC	4 cut(s)	327, 487, 709, 1053
NlaIII	CATG	8 cut(s)	214, 224, 290, 344, 447, 472, 669, 868
NlaIV	GGNNCC	1 cut(s)	963
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	2 cut(s)	464, 559
NsiI	ATGCAT	1 cut(s)	870
NspI	RCATGY	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	224
PagI	TCATGA	1 cut(s)	340
PceI	AGGCCT	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	65, 102
PflMI	CCANNNNNTGG	1 cut(s)	613
PkrI	GCNGC	5 cut(s)	202, 253, 321, 348, 834
PleI	GAGTC	4 cut(s)	248, 446, 948, 1065
PpsI	GAGTC	4 cut(s)	248, 446, 948, 1065
Psp124BI	GAGCTC	1 cut(s)	805
Psp6I	CCWGG	1 cut(s)	273
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	963
PspPI	GGNCC	2 cut(s)	187, 893
PstI	CTGCAG	2 cut(s)	324, 949
PsuI	RGATCY	1 cut(s)	709
RsaI	GTAC	3 cut(s)	533, 732, 876
RsaNI	GTAC	3 cut(s)	532, 731, 875
RseI	CAYNNNNRTG	1 cut(s)	524
SacI	GAGCTC	1 cut(s)	805
SacII	CCGCGG	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	536, 969
SatI	GCNGC	5 cut(s)	201, 252, 320, 347, 833
Sau3AI	GATC	4 cut(s)	327, 487, 709, 1053
Sau96I	GGNCC	2 cut(s)	187, 893
ScaI	AGTACT	2 cut(s)	533, 876
SchI	GAGTC	4 cut(s)	249, 446, 948, 1065
ScrFI	CCNGG	2 cut(s)	275, 798
SduI	GDGCHC	4 cut(s)	90, 597, 798, 805
SfaNI	GCATC	3 cut(s)	85, 306, 735
SfcI	CTRYAG	4 cut(s)	320, 373, 945, 1039
Sfr303I	CCGCGG	1 cut(s)	204
SgrBI	CCGCGG	1 cut(s)	204
SinI	GGWCC	2 cut(s)	187, 893
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	1 cut(s)	492
SmoI	CTYRAG	1 cut(s)	492
SphI	GCATGC	1 cut(s)	224
Sse9I	AATT	8 cut(s)	13, 120, 497, 551, 572, 680, 940, 974
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	5 cut(s)	201, 203, 224, 247, 254
SspI	AATATT	2 cut(s)	817, 1079
SstI	GAGCTC	1 cut(s)	805
StuI	AGGCCT	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	273, 796
StyI	CCWWGG	3 cut(s)	286, 351, 443
TaaI	ACNGT	3 cut(s)	262, 793, 1007
TaiI	ACGT	1 cut(s)	544
TaqI	TCGA	3 cut(s)	68, 93, 1074
TasI	AATT	8 cut(s)	13, 120, 497, 551, 572, 680, 940, 974
TatI	WGTACW	2 cut(s)	531, 874
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	65, 102
Tru1I	TTAA	2 cut(s)	536, 969
Tru9I	TTAA	2 cut(s)	536, 969
TscAI	CASTG	2 cut(s)	186, 779
TseFI	GTSAC	2 cut(s)	464, 559
TseI	GCWGC	4 cut(s)	251, 319, 346, 832
Tsp45I	GTSAC	2 cut(s)	464, 559
TspDTI	ATGAA	2 cut(s)	115, 329
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	2 cut(s)	186, 779
Van91I	CCANNNNNTGG	1 cut(s)	613
VpaK11BI	GGWCC	2 cut(s)	187, 893
XapI	RAATTY	3 cut(s)	13, 120, 940
XceI	RCATGY	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	33
ZrmI	AGTACT	2 cut(s)	533, 876
Zsp2I	ATGCAT	1 cut(s)	870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.