Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004473

Physical Location & Seq

Genomic Coordinates Reverse (-)

6052347 .. 6053784

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006292

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGATTCCCTCTCATCGGTTTCGCCCTCCATAATCCTCCCTCCGACCGCCAACCCTCTCCGTCCGCGGCGCCGCCGGATGAGCTTCTCTCCGGTCAGCCTACGCAACCGCAACCTCTGCCTGTACTCTGTTTTCGGAGTGCCGCGCTCTCCCGATCTCTCCAGAAGGCGGTTCTGTCTCAGAGAAGCTTCCTGCAGGTCGGCCGGCGGCGGAGGAGGAGCTGGGGCAAATCAGGAGGAAGAGGATTCCGACGACGAAAGTGAGCAGGTGGAGAGGGCCCTTCACCTCGACGGCAGCATTCCTTCTACTTCCGATGAGTTTGTGAAGCGCGTGTCCTCACGCGCTTACGATATGCGGCGGCACCTCCAGCAGACCTTCGATAGCAGCAGCTATGATGTGTTGGAGGCTAATCCTTGGAGAGAAACTTCCAAGCCTGTATATGTATTAACTCAGAGGGAGAACCAGCTTTGCACAATGAAAACACGAAGAAATGTCAGTGAAGTTGAAAGGGAGCTTGGGCAATTGTTTTCGAAAGGAGGAAAGTGGAACCAAGCTAAACAGCCCAGAAATGGTAACAAGTTCCAGATGCTTGTTGAGGATATTAGGGATGGAGTGCTTGTTTTCGAGGATGCAAATGAAGCAGTGAAGTACTGTGATTTGTTGCAAGGAGGCGGCCAAGGTTGTGAAGGTGTTGCAGAAATAGAGGCCTCATCAGTATTTGCTCTGTGCCAGAAAATGAGAGCTCTAGCGGTTCTGTTTCGTCGCGGAAGAAAGCCTCCGTTGCCCCAGAGCTTGGAGCTCAACCTTAAGGCCAGGAAGCGCTCCCTTGAAGACCAACAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3110

Protein Analysis

282

Amino Acids

31.63

Weight (kDa)

8.85

Isoelectric Point (pI)

82.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13990 AT1G13990 AT1G13990
fragaria_vesca	FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770
malus_domestica	MD13G1068600.v1.1 MD16G1067400.v1.1
prunus_persica	Prupe.1G279300_v2.0.a1
pyrus_communis	pycom13g06040 pycom16g05890
rosa_chinensis	RchiOBHm_Chr4g0439161
rosa_laevigata	RLG00000006292
rosa_multiflora	Rmu_sc0002236.1_g000007 Rmu_sc0027506.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380140
rosa_rugosa	Rorug04G0316300 Rorug04G0316400
rosa_samantha	Rh4AG367100 Rh4BG378700 Rh4CG393000 Rh4DG373300
rosa_wichuraiana	Rw0G011690 Rw5G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	256
Acc36I	ACCTGC	2 cut(s)	186, 256
AccB1I	GGYRCC	2 cut(s)	69, 360
AccB7I	CCANNNNNTGG	1 cut(s)	793
AccII	CGCG	5 cut(s)	67, 145, 330, 342, 765
AcoI	YGGCCR	2 cut(s)	201, 673
AcyI	GRCGYC	1 cut(s)	70
AfaI	GTAC	2 cut(s)	125, 650
AfeI	AGCGCT	1 cut(s)	821
AfiI	CCNNNNNNNGG	4 cut(s)	16, 168, 569, 793
AflII	CTTAAG	1 cut(s)	806
AgsI	TTSAA	2 cut(s)	506, 830
AjnI	CCWGG	1 cut(s)	812
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
Alw21I	GWGCWC	2 cut(s)	745, 801
Alw26I	GTCTC	1 cut(s)	182
Aor51HI	AGCGCT	1 cut(s)	821
AoxI	GGCC	5 cut(s)	201, 276, 673, 705, 810
ApaI	GGGCCC	1 cut(s)	280
ApeKI	GCWGC	3 cut(s)	294, 384, 387
AspLEI	GCGC	5 cut(s)	72, 147, 330, 344, 822
AspS9I	GGNCC	2 cut(s)	276, 277
AsuHPI	GGTGA	1 cut(s)	275
AsuII	TTCGAA	1 cut(s)	530
BaeGI	GKGCMC	1 cut(s)	280
BanI	GGYRCC	2 cut(s)	69, 360
BanII	GRGCYC	3 cut(s)	280, 745, 801
BbsI	GAAGAC	1 cut(s)	837
Bbv12I	GWGCWC	2 cut(s)	745, 801
BbvI	GCAGC	3 cut(s)	306, 396, 399
BccI	CCATC	1 cut(s)	602
BceAI	ACGGC	1 cut(s)	307
BciT130I	CCWGG	1 cut(s)	814
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	746
BfmI	CTRYAG	1 cut(s)	193
BfoI	RGCGCY	2 cut(s)	73, 823
BfrI	CTTAAG	1 cut(s)	806
BfuAI	ACCTGC	2 cut(s)	186, 256
BmcAI	AGTACT	1 cut(s)	650
Bme1390I	CCNGG	1 cut(s)	814
BmgT120I	GGNCC	2 cut(s)	276, 277
BmiI	GGNNCC	4 cut(s)	71, 278, 362, 548
BmrFI	CCNGG	1 cut(s)	814
BmsI	GCATC	2 cut(s)	576, 619
BpiI	GAAGAC	1 cut(s)	837
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
BpmI	CTGGAG	2 cut(s)	145, 350
Bpu14I	TTCGAA	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	70
BsaJI	CCNNGG	3 cut(s)	65, 413, 676
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	603, 633
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 168, 569, 793
Bse118I	RCCGGY	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	814
BseDI	CCNNGG	3 cut(s)	65, 413, 676
BseGI	GGATG	3 cut(s)	84, 613, 634
BseLI	CCNNNNNNNGG	4 cut(s)	16, 168, 569, 793
BseMII	CTCAG	2 cut(s)	193, 464
BseRI	GAGGAG	2 cut(s)	228, 231
BseSI	GKGCMC	1 cut(s)	280
BseX3I	CGGCCG	1 cut(s)	201
BseXI	GCAGC	3 cut(s)	306, 396, 399
BseYI	CCCAGC	1 cut(s)	221
Bsh1236I	CGCG	5 cut(s)	67, 145, 330, 342, 765
Bsh1285I	CGRYCG	2 cut(s)	48, 204
BshFI	GGCC	5 cut(s)	203, 278, 675, 707, 812
BshNI	GGYRCC	2 cut(s)	69, 360
BsiEI	CGRYCG	2 cut(s)	48, 204
BsiHKAI	GWGCWC	2 cut(s)	745, 801
BsiSI	CCGG	3 cut(s)	76, 92, 204
BslI	CCNNNNNNNGG	4 cut(s)	16, 168, 569, 793
BsmAI	GTCTC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	5 cut(s)	203, 278, 675, 707, 812
Bsp119I	TTCGAA	1 cut(s)	530
Bsp120I	GGGCCC	1 cut(s)	276
Bsp1286I	GDGCHC	3 cut(s)	280, 745, 801
Bsp143I	GATC	1 cut(s)	154
BspANI	GGCC	5 cut(s)	203, 278, 675, 707, 812
BspCNI	CTCAG	2 cut(s)	192, 463
BspFNI	CGCG	5 cut(s)	67, 145, 330, 342, 765
BspLI	GGNNCC	4 cut(s)	71, 278, 362, 548
BspMAI	CTGCAG	1 cut(s)	197
BspMI	ACCTGC	2 cut(s)	186, 256
BspT104I	TTCGAA	1 cut(s)	530
BspT107I	GGYRCC	2 cut(s)	69, 360
BspTI	CTTAAG	1 cut(s)	806
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	65, 413, 676
BssMI	GATC	1 cut(s)	154
BssNI	GRCGYC	1 cut(s)	70
BssT1I	CCWWGG	2 cut(s)	413, 676
Bst2UI	CCWGG	1 cut(s)	814
Bst4CI	ACNGT	1 cut(s)	653
Bst6I	CTCTTC	1 cut(s)	234
BstACI	GRCGYC	1 cut(s)	70
BstAFI	CTTAAG	1 cut(s)	806
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstBI	TTCGAA	1 cut(s)	530
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	2 cut(s)	179, 450
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	3 cut(s)	84, 613, 634
BstFNI	CGCG	5 cut(s)	67, 145, 330, 342, 765
BstH2I	RGCGCY	2 cut(s)	73, 823
BstHHI	GCGC	5 cut(s)	72, 147, 330, 344, 822
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	154
BstMCI	CGRYCG	2 cut(s)	48, 204
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 117, 367, 638, 781
BstNI	CCWGG	1 cut(s)	814
BstSCI	CCNGG	1 cut(s)	812
BstSFI	CTRYAG	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	280
BstUI	CGCG	5 cut(s)	67, 145, 330, 342, 765
BstV1I	GCAGC	3 cut(s)	306, 396, 399
BstV2I	GAAGAC	1 cut(s)	837
BstZI	CGGCCG	1 cut(s)	201
BsuRI	GGCC	5 cut(s)	203, 278, 675, 707, 812
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	84, 613, 634
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	2 cut(s)	502, 648
BveI	ACCTGC	2 cut(s)	186, 256
Cac8I	GCNNGC	1 cut(s)	205
CfoI	GCGC	5 cut(s)	72, 147, 330, 344, 822
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	276, 277
Cfr42I	CCGCGG	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	124, 649
CviQI	GTAC	2 cut(s)	124, 649
DdeI	CTNAG	2 cut(s)	179, 450
DinI	GGCGCC	1 cut(s)	71
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
EaeI	YGGCCR	2 cut(s)	201, 673
EagI	CGGCCG	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
EciI	GGCGGA	1 cut(s)	225
Ecl136II	GAGCTC	2 cut(s)	743, 799
EclXI	CGGCCG	1 cut(s)	201
Eco130I	CCWWGG	2 cut(s)	413, 676
Eco147I	AGGCCT	1 cut(s)	707
Eco24I	GRGCYC	3 cut(s)	280, 745, 801
Eco47III	AGCGCT	1 cut(s)	821
Eco52I	CGGCCG	1 cut(s)	201
Eco53kI	GAGCTC	2 cut(s)	743, 799
EcoICRI	GAGCTC	2 cut(s)	743, 799
EcoO109I	RGGNCCY	2 cut(s)	276, 277
EcoRII	CCWGG	1 cut(s)	812
EcoT14I	CCWWGG	2 cut(s)	413, 676
EcoT38I	GRGCYC	3 cut(s)	280, 745, 801
EgeI	GGCGCC	1 cut(s)	71
EheI	GGCGCC	1 cut(s)	71
ErhI	CCWWGG	2 cut(s)	413, 676
FaiI	YATR	5 cut(s)	32, 353, 393, 439, 441
FokI	GGATG	3 cut(s)	91, 620, 641
FriOI	GRGCYC	3 cut(s)	280, 745, 801
FspBI	CTAG	1 cut(s)	746
GlaI	GCGC	5 cut(s)	71, 146, 329, 343, 821
GsaI	CCCAGC	1 cut(s)	225
GsuI	CTGGAG	2 cut(s)	145, 350
HaeII	RGCGCY	2 cut(s)	73, 823
HaeIII	GGCC	5 cut(s)	203, 278, 675, 707, 812
HapII	CCGG	3 cut(s)	76, 92, 204
HhaI	GCGC	5 cut(s)	72, 147, 330, 344, 822
Hin1I	GRCGYC	1 cut(s)	70
Hin6I	GCGC	5 cut(s)	70, 145, 328, 342, 820
HinP1I	GCGC	5 cut(s)	70, 145, 328, 342, 820
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	2 cut(s)	5, 245
HpaII	CCGG	3 cut(s)	76, 92, 204
HphI	GGTGA	1 cut(s)	275
Hpy188I	TCNGA	6 cut(s)	45, 137, 182, 250, 313, 453
Hpy188III	TCNNGA	4 cut(s)	152, 162, 233, 583
Hpy99I	CGWCG	4 cut(s)	254, 257, 293, 765
HpyAV	CCTTC	5 cut(s)	159, 290, 312, 385, 680
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4V	TGCA	5 cut(s)	195, 471, 632, 664, 695
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 117, 367, 638, 781
HpyF3I	CTNAG	2 cut(s)	179, 450
Hsp92I	GRCGYC	1 cut(s)	70
HspAI	GCGC	5 cut(s)	70, 145, 328, 342, 820
KasI	GGCGCC	1 cut(s)	69
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
KspI	CCGCGG	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	4 cut(s)	218, 511, 796, 827
Lsp1109I	GCAGC	3 cut(s)	306, 396, 399
LweI	GCATC	2 cut(s)	576, 619
MaeI	CTAG	1 cut(s)	746
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	4 cut(s)	251, 498, 780, 842
MfeI	CAATTG	1 cut(s)	521
MhlI	GDGCHC	3 cut(s)	280, 745, 801
MluCI	AATT	1 cut(s)	521
Mly113I	GGCGCC	1 cut(s)	70
MmeI	TCCRAC	3 cut(s)	68, 273, 381
MroNI	GCCGGC	1 cut(s)	203
MseI	TTAA	2 cut(s)	446, 807
MspA1I	CMGCKG	1 cut(s)	67
MspCI	CTTAAG	1 cut(s)	806
MspI	CCGG	3 cut(s)	76, 92, 204
MspR9I	CCNGG	1 cut(s)	814
MunI	CAATTG	1 cut(s)	521
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	814
MvnI	CGCG	5 cut(s)	67, 145, 330, 342, 765
MwoI	GCNNNNNNNGC	5 cut(s)	81, 117, 367, 638, 781
NaeI	GCCGGC	1 cut(s)	205
NarI	GGCGCC	1 cut(s)	70
NdeII	GATC	1 cut(s)	154
NgoMIV	GCCGGC	1 cut(s)	203
NlaIV	GGNNCC	4 cut(s)	71, 278, 362, 548
NspV	TTCGAA	1 cut(s)	530
PaqCI	CACCTGC	1 cut(s)	256
PceI	AGGCCT	1 cut(s)	707
PctI	GAATGC	1 cut(s)	297
PdiI	GCCGGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	5, 245
PflMI	CCANNNNNTGG	1 cut(s)	793
PluTI	GGCGCC	1 cut(s)	73
Psp124BI	GAGCTC	2 cut(s)	745, 801
Psp6I	CCWGG	1 cut(s)	812
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	812
PspN4I	GGNNCC	4 cut(s)	71, 278, 362, 548
PspOMI	GGGCCC	1 cut(s)	276
PspPI	GGNCC	2 cut(s)	276, 277
PstI	CTGCAG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	125, 650
RsaNI	GTAC	2 cut(s)	124, 649
SacI	GAGCTC	2 cut(s)	745, 801
SacII	CCGCGG	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	446, 807
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	2 cut(s)	276, 277
SbfI	CCTGCAGG	1 cut(s)	197
ScaI	AGTACT	1 cut(s)	650
ScrFI	CCNGG	1 cut(s)	814
SdaI	CCTGCAGG	1 cut(s)	197
SduI	GDGCHC	3 cut(s)	280, 745, 801
SfaNI	GCATC	2 cut(s)	576, 619
SfcI	CTRYAG	1 cut(s)	193
SfoI	GGCGCC	1 cut(s)	71
Sfr303I	CCGCGG	1 cut(s)	68
SfuI	TTCGAA	1 cut(s)	530
SgrBI	CCGCGG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	806
SmoI	CTYRAG	1 cut(s)	806
Sse8387I	CCTGCAGG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	521
SseBI	AGGCCT	1 cut(s)	707
SspDI	GGCGCC	1 cut(s)	69
SspMI	CTAG	1 cut(s)	746
SstI	GAGCTC	2 cut(s)	745, 801
StuI	AGGCCT	1 cut(s)	707
StyD4I	CCNGG	1 cut(s)	812
StyI	CCWWGG	2 cut(s)	413, 676
TaaI	ACNGT	1 cut(s)	653
TaqI	TCGA	4 cut(s)	288, 378, 530, 624
TasI	AATT	1 cut(s)	521
TatI	WGTACW	2 cut(s)	123, 648
TauI	GCSGC	7 cut(s)	70, 75, 145, 210, 358, 361, 675
TfiI	GAWTC	2 cut(s)	5, 245
Tru1I	TTAA	2 cut(s)	446, 807
Tru9I	TTAA	2 cut(s)	446, 807
TscAI	CASTG	2 cut(s)	502, 648
TseI	GCWGC	3 cut(s)	294, 384, 387
TspDTI	ATGAA	2 cut(s)	491, 651
TspGWI	ACGGA	2 cut(s)	50, 768
TspRI	CASTG	2 cut(s)	502, 648
Van91I	CCANNNNNTGG	1 cut(s)	793
Vha464I	CTTAAG	1 cut(s)	806
XspI	CTAG	1 cut(s)	746
ZrmI	AGTACT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.