Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004473

Physical Location & Seq

Genomic Coordinates Reverse (-)

28331546 .. 28334041

Gene Structure 2496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G279300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGATTCTCTCTCATCGGTAAAGGTCTTGCCCTCCGCAGTCACCAACCCTCTCCGTCCACGGCGCCGCCGGCTCCCTCTCTCTTCTTCTTCACTCGGCAGCTTACACAATCGGAATCTCTACATCTCCTCCTCCGTCTTTGGAGTGCCGTGCACTCCCGAGACTTCTTCGTCTTATTCTAGAAGGAGACTCGTGAGAGAAGTTTCTTGCCGGTCGAGCGGTGGCGGTGGCGGTGCCCCAGAGGACGACGACGCCGACGCCGATGATGATGGAAGTGAGCAGGTGGAGAGAGCGCTTCATCTGGATGGTAATATTCCCTCCACTTCCGATGAGTTCGTGAAGCGCGTGTCGTCTCGTGCTTACGACATGCGGCGCCACCTCCAGCAGACCTTCGATTCCAGCAGCTACGATGTGTTGGAGGCCAACCCTTGGAGAGAAACTTCGAAGCCTGTGTATGTACTAACACAAAGGGAAAACCTGTTGTGCACCATGAAAACCCGAAGAAATCGCAGTGAAGTTGAAACGGAGCTTGGGAAATTGTTTTCCAAGGGATCAAAGTGGAACCAAACGAAACAGCCAAGAAACGGTACAAAGTTCCAGATGCTTGTGGAGGATATTAGGGATGGAGTGCTTGTTTTTGAGGATGAGAATGAAGCTGTAAGGTATTGTGACTTGTTGCAAGGCGGGGGCCAAGGTTGTGAAGGTGTTGCAGAAATAGAGGCCTCATCAGTATTCGATCTGTGCCAGAAAATGAGAGCTCTTGCAGTTCTTTTCCGTCGCGGGAGAAGCCCACCTCTGCCTCAAAGCCTGGAGCTCAACCTCAGGGCTCGAAAGCGCTCCCTTGAAGACCAACAAGACCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3110

Protein Analysis

288

Amino Acids

32.16

Weight (kDa)

7.59

Isoelectric Point (pI)

79.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13990 AT1G13990 AT1G13990
fragaria_vesca	FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770
malus_domestica	MD13G1068600.v1.1 MD16G1067400.v1.1
prunus_persica	Prupe.1G279300_v2.0.a1
pyrus_communis	pycom13g06040 pycom16g05890
rosa_chinensis	RchiOBHm_Chr4g0439161
rosa_laevigata	RLG00000006292
rosa_multiflora	Rmu_sc0002236.1_g000007 Rmu_sc0027506.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380140
rosa_rugosa	Rorug04G0316300 Rorug04G0316400
rosa_samantha	Rh4AG367100 Rh4BG378700 Rh4CG393000 Rh4DG373300
rosa_wichuraiana	Rw0G011690 Rw5G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	271
AasI	GACNNNNNNGTC	1 cut(s)	169
Acc36I	ACCTGC	1 cut(s)	271
AccB1I	GGYRCC	3 cut(s)	63, 233, 372
AccB7I	CCANNNNNTGG	1 cut(s)	429
AccBSI	CCGCTC	1 cut(s)	219
AccII	CGCG	2 cut(s)	345, 780
AciI	CCGC	8 cut(s)	36, 67, 219, 225, 231, 370, 684, 780
AclWI	GGATC	1 cut(s)	559
AcyI	GRCGYC	4 cut(s)	64, 252, 258, 373
AfaI	GTAC	2 cut(s)	459, 589
AfeI	AGCGCT	2 cut(s)	294, 836
AfiI	CCNNNNNNNGG	2 cut(s)	429, 584
AgsI	TTSAA	2 cut(s)	521, 845
AjnI	CCWGG	1 cut(s)	807
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AluBI	AGCT	6 cut(s)	102, 405, 529, 656, 758, 814
AluI	AGCT	6 cut(s)	102, 405, 529, 656, 758, 814
Alw21I	GWGCWC	4 cut(s)	155, 488, 760, 816
Alw26I	GTCTC	3 cut(s)	155, 181, 357
Alw44I	GTGCAC	2 cut(s)	151, 484
AlwI	GGATC	1 cut(s)	559
Ama87I	CYCGRG	1 cut(s)	158
Aor51HI	AGCGCT	2 cut(s)	294, 836
AoxI	GGCC	3 cut(s)	420, 688, 720
ApaLI	GTGCAC	2 cut(s)	151, 484
ApeKI	GCWGC	2 cut(s)	99, 402
AspLEI	GCGC	5 cut(s)	66, 295, 345, 375, 837
AspS9I	GGNCC	1 cut(s)	688
AsuHPI	GGTGA	1 cut(s)	34
AsuII	TTCGAA	1 cut(s)	443
AvaI	CYCGRG	1 cut(s)	158
AxyI	CCTNAGG	1 cut(s)	821
BaeGI	GKGCMC	3 cut(s)	155, 238, 488
BanI	GGYRCC	3 cut(s)	63, 233, 372
BanII	GRGCYC	3 cut(s)	760, 816, 829
BauI	CACGAG	2 cut(s)	191, 354
BbsI	GAAGAC	1 cut(s)	852
Bbv12I	GWGCWC	4 cut(s)	155, 488, 760, 816
BbvI	GCAGC	2 cut(s)	111, 414
BccI	CCATC	3 cut(s)	263, 299, 617
BceAI	ACGGC	2 cut(s)	77, 133
BciT130I	CCWGG	1 cut(s)	809
BcoDI	GTCTC	3 cut(s)	155, 181, 357
BfaI	CTAG	1 cut(s)	180
BfoI	RGCGCY	4 cut(s)	67, 296, 376, 838
BfuAI	ACCTGC	1 cut(s)	271
BisI	GCNGC	4 cut(s)	67, 100, 371, 403
BlsI	GCNGC	4 cut(s)	68, 101, 372, 404
Bme1390I	CCNGG	1 cut(s)	809
BmeT110I	CYCGRG	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	688
BmiI	GGNNCC	6 cut(s)	65, 74, 235, 374, 563, 689
BmrFI	CCNGG	1 cut(s)	809
BmsI	GCATC	1 cut(s)	591
BpiI	GAAGAC	1 cut(s)	852
BpmI	CTGGAG	2 cut(s)	365, 830
Bpu14I	TTCGAA	1 cut(s)	443
BsaHI	GRCGYC	4 cut(s)	64, 252, 258, 373
BsaJI	CCNNGG	4 cut(s)	59, 428, 546, 691
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 618, 648
Bsc4I	CCNNNNNNNGG	2 cut(s)	429, 584
Bse118I	RCCGGY	2 cut(s)	69, 210
Bse21I	CCTNAGG	1 cut(s)	821
BseBI	CCWGG	1 cut(s)	809
BseDI	CCNNGG	4 cut(s)	59, 428, 546, 691
BseGI	GGATG	3 cut(s)	310, 628, 649
BseLI	CCNNNNNNNGG	2 cut(s)	429, 584
BseMII	CTCAG	1 cut(s)	835
BseRI	GAGGAG	2 cut(s)	118, 121
BseSI	GKGCMC	3 cut(s)	155, 238, 488
BseXI	GCAGC	2 cut(s)	111, 414
Bsh1236I	CGCG	2 cut(s)	345, 780
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	3 cut(s)	422, 690, 722
BshNI	GGYRCC	3 cut(s)	63, 233, 372
BsiEI	CGRYCG	1 cut(s)	215
BsiHKAI	GWGCWC	4 cut(s)	155, 488, 760, 816
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	70, 211
BslI	CCNNNNNNNGG	2 cut(s)	429, 584
BsmAI	GTCTC	3 cut(s)	155, 181, 357
BsmBI	CGTCTC	1 cut(s)	357
BsnI	GGCC	3 cut(s)	422, 690, 722
BsoBI	CYCGRG	1 cut(s)	158
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1286I	GDGCHC	6 cut(s)	155, 238, 488, 760, 816, 829
Bsp143I	GATC	2 cut(s)	551, 736
BspACI	CCGC	8 cut(s)	36, 67, 219, 225, 231, 370, 684, 780
BspANI	GGCC	3 cut(s)	422, 690, 722
BspCNI	CTCAG	1 cut(s)	834
BspFNI	CGCG	2 cut(s)	345, 780
BspLI	GGNNCC	6 cut(s)	65, 74, 235, 374, 563, 689
BspMI	ACCTGC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	559
BspT104I	TTCGAA	1 cut(s)	443
BspT107I	GGYRCC	3 cut(s)	63, 233, 372
BsrBI	CCGCTC	1 cut(s)	219
BsrFI	RCCGGY	2 cut(s)	69, 210
BssAI	RCCGGY	2 cut(s)	69, 210
BssECI	CCNNGG	4 cut(s)	59, 428, 546, 691
BssMI	GATC	2 cut(s)	551, 736
BssNI	GRCGYC	4 cut(s)	64, 252, 258, 373
BssSI	CACGAG	2 cut(s)	191, 354
BssT1I	CCWWGG	3 cut(s)	428, 546, 691
Bst2BI	CACGAG	2 cut(s)	191, 354
Bst2UI	CCWGG	1 cut(s)	809
Bst4CI	ACNGT	1 cut(s)	587
Bst6I	CTCTTC	1 cut(s)	88
BstACI	GRCGYC	4 cut(s)	64, 252, 258, 373
BstBI	TTCGAA	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	821
BstDSI	CCRYGG	1 cut(s)	59
BstF5I	GGATG	3 cut(s)	310, 628, 649
BstFNI	CGCG	2 cut(s)	345, 780
BstH2I	RGCGCY	4 cut(s)	67, 296, 376, 838
BstHHI	GCGC	5 cut(s)	66, 295, 345, 375, 837
BstKTI	GATC	2 cut(s)	554, 739
BstMAI	GTCTC	3 cut(s)	155, 181, 357
BstMBI	GATC	2 cut(s)	551, 736
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 216, 786
BstNI	CCWGG	1 cut(s)	809
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	807
BstSLI	GKGCMC	3 cut(s)	155, 238, 488
BstUI	CGCG	2 cut(s)	345, 780
BstV1I	GCAGC	2 cut(s)	111, 414
BstV2I	GAAGAC	1 cut(s)	852
Bsu36I	CCTNAGG	1 cut(s)	821
BsuRI	GGCC	3 cut(s)	422, 690, 722
BtgI	CCRYGG	1 cut(s)	59
BtsCI	GGATG	3 cut(s)	310, 628, 649
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	1 cut(s)	517
BveI	ACCTGC	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	71
CfoI	GCGC	5 cut(s)	66, 295, 345, 375, 837
Cfr10I	RCCGGY	2 cut(s)	69, 210
Cfr13I	GGNCC	1 cut(s)	688
CseI	GACGC	2 cut(s)	260, 266
Csp6I	GTAC	2 cut(s)	458, 588
CviAII	CATG	2 cut(s)	367, 490
CviQI	GTAC	2 cut(s)	458, 588
DdeI	CTNAG	1 cut(s)	821
DinI	GGCGCC	2 cut(s)	65, 374
DpnI	GATC	2 cut(s)	553, 738
DpnII	GATC	2 cut(s)	551, 736
DrdI	GACNNNNNNGTC	1 cut(s)	169
DseDI	GACNNNNNNGTC	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Ecl136II	GAGCTC	2 cut(s)	758, 814
Eco130I	CCWWGG	3 cut(s)	428, 546, 691
Eco147I	AGGCCT	1 cut(s)	722
Eco24I	GRGCYC	3 cut(s)	760, 816, 829
Eco47III	AGCGCT	2 cut(s)	294, 836
Eco53kI	GAGCTC	2 cut(s)	758, 814
Eco81I	CCTNAGG	1 cut(s)	821
Eco88I	CYCGRG	1 cut(s)	158
EcoICRI	GAGCTC	2 cut(s)	758, 814
EcoRII	CCWGG	1 cut(s)	807
EcoT14I	CCWWGG	3 cut(s)	428, 546, 691
EcoT38I	GRGCYC	3 cut(s)	760, 816, 829
EgeI	GGCGCC	2 cut(s)	65, 374
EheI	GGCGCC	2 cut(s)	65, 374
ErhI	CCWWGG	3 cut(s)	428, 546, 691
Esp3I	CGTCTC	1 cut(s)	357
FaeI	CATG	2 cut(s)	370, 493
FaiI	YATR	4 cut(s)	368, 456, 491, 862
FatI	CATG	2 cut(s)	366, 489
FauI	CCCGC	2 cut(s)	677, 773
Fnu4HI	GCNGC	4 cut(s)	67, 100, 371, 403
FokI	GGATG	3 cut(s)	317, 635, 656
FriOI	GRGCYC	3 cut(s)	760, 816, 829
Fsp4HI	GCNGC	4 cut(s)	67, 100, 371, 403
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	5 cut(s)	65, 294, 344, 374, 836
GluI	GCNGC	4 cut(s)	67, 100, 371, 403
GsuI	CTGGAG	2 cut(s)	365, 830
HaeII	RGCGCY	4 cut(s)	67, 296, 376, 838
HaeIII	GGCC	3 cut(s)	422, 690, 722
HapII	CCGG	2 cut(s)	70, 211
HgaI	GACGC	2 cut(s)	260, 266
HhaI	GCGC	5 cut(s)	66, 295, 345, 375, 837
Hin1I	GRCGYC	4 cut(s)	64, 252, 258, 373
Hin1II	CATG	2 cut(s)	370, 493
Hin6I	GCGC	5 cut(s)	64, 293, 343, 373, 835
HinP1I	GCGC	5 cut(s)	64, 293, 343, 373, 835
HinfI	GANTC	4 cut(s)	5, 115, 189, 395
HpaII	CCGG	2 cut(s)	70, 211
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	3 cut(s)	59, 153, 486
Hpy188I	TCNGA	2 cut(s)	114, 328
Hpy188III	TCNNGA	6 cut(s)	158, 180, 193, 302, 337, 598
Hpy8I	GTNNAC	3 cut(s)	59, 153, 486
Hpy99I	CGWCG	4 cut(s)	251, 254, 260, 780
HpyAV	CCTTC	3 cut(s)	177, 400, 695
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4V	TGCA	5 cut(s)	153, 486, 679, 710, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 216, 786
HpyF3I	CTNAG	1 cut(s)	821
Hsp92I	GRCGYC	4 cut(s)	64, 252, 258, 373
Hsp92II	CATG	2 cut(s)	370, 493
HspAI	GCGC	5 cut(s)	64, 293, 343, 373, 835
KasI	GGCGCC	2 cut(s)	63, 372
KroI	GCCGGC	1 cut(s)	69
KroNI	GCCGGC	1 cut(s)	71
Kzo9I	GATC	2 cut(s)	551, 736
LmnI	GCTCC	4 cut(s)	78, 526, 811, 842
Lsp1109I	GCAGC	2 cut(s)	111, 414
LweI	GCATC	1 cut(s)	591
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	40, 668
MalI	GATC	2 cut(s)	553, 738
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	2 cut(s)	551, 736
MboII	GAAGA	6 cut(s)	75, 78, 81, 159, 513, 857
MhlI	GDGCHC	6 cut(s)	155, 238, 488, 760, 816, 829
MluCI	AATT	1 cut(s)	536
Mly113I	GGCGCC	2 cut(s)	64, 373
MlyI	GAGTC	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	396
MroNI	GCCGGC	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	303
MspI	CCGG	2 cut(s)	70, 211
MspR9I	CCNGG	1 cut(s)	809
MvaI	CCWGG	1 cut(s)	809
MvnI	CGCG	2 cut(s)	345, 780
MwoI	GCNNNNNNNGC	3 cut(s)	70, 216, 786
NaeI	GCCGGC	1 cut(s)	71
NarI	GGCGCC	2 cut(s)	64, 373
NdeII	GATC	2 cut(s)	551, 736
NgoMIV	GCCGGC	1 cut(s)	69
NlaIII	CATG	2 cut(s)	370, 493
NlaIV	GGNNCC	6 cut(s)	65, 74, 235, 374, 563, 689
NmeAIII	GCCGAG	1 cut(s)	75
NmuCI	GTSAC	2 cut(s)	40, 668
NspI	RCATGY	1 cut(s)	370
NspV	TTCGAA	1 cut(s)	443
PaqCI	CACCTGC	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	722
PcsI	WCGNNNNNNNCGW	3 cut(s)	252, 258, 342
PdiI	GCCGGC	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	5, 115, 395
PflMI	CCANNNNNTGG	1 cut(s)	429
PkrI	GCNGC	4 cut(s)	68, 101, 372, 404
PleI	GAGTC	1 cut(s)	183
PluTI	GGCGCC	2 cut(s)	67, 376
PpsI	GAGTC	1 cut(s)	183
Psp124BI	GAGCTC	2 cut(s)	760, 816
Psp6I	CCWGG	1 cut(s)	807
PspGI	CCWGG	1 cut(s)	807
PspN4I	GGNNCC	6 cut(s)	65, 74, 235, 374, 563, 689
PspPI	GGNCC	1 cut(s)	688
RsaI	GTAC	2 cut(s)	459, 589
RsaNI	GTAC	2 cut(s)	458, 588
RseI	CAYNNNNRTG	1 cut(s)	303
SacI	GAGCTC	2 cut(s)	760, 816
SatI	GCNGC	4 cut(s)	67, 100, 371, 403
Sau3AI	GATC	2 cut(s)	551, 736
Sau96I	GGNCC	1 cut(s)	688
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	809
SduI	GDGCHC	6 cut(s)	155, 238, 488, 760, 816, 829
SfaNI	GCATC	1 cut(s)	591
SfoI	GGCGCC	2 cut(s)	65, 374
SfuI	TTCGAA	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	303
Sse9I	AATT	1 cut(s)	536
SseBI	AGGCCT	1 cut(s)	722
SsiI	CCGC	8 cut(s)	36, 67, 219, 225, 231, 370, 684, 780
SspDI	GGCGCC	2 cut(s)	63, 372
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	1 cut(s)	180
SstI	GAGCTC	2 cut(s)	760, 816
StuI	AGGCCT	1 cut(s)	722
StyD4I	CCNGG	1 cut(s)	807
StyI	CCWWGG	3 cut(s)	428, 546, 691
TaaI	ACNGT	1 cut(s)	587
TaqI	TCGA	5 cut(s)	215, 393, 443, 735, 829
TasI	AATT	1 cut(s)	536
TatI	WGTACW	1 cut(s)	457
TauI	GCSGC	2 cut(s)	69, 373
TfiI	GAWTC	3 cut(s)	5, 115, 395
TscAI	CASTG	1 cut(s)	517
TseFI	GTSAC	2 cut(s)	40, 668
TseI	GCWGC	2 cut(s)	99, 402
Tsp45I	GTSAC	2 cut(s)	40, 668
TspDTI	ATGAA	3 cut(s)	287, 506, 666
TspGWI	ACGGA	4 cut(s)	44, 124, 539, 764
TspRI	CASTG	1 cut(s)	517
Van91I	CCANNNNNTGG	1 cut(s)	429
VneI	GTGCAC	2 cut(s)	151, 484
XbaI	TCTAGA	1 cut(s)	179
XceI	RCATGY	1 cut(s)	370
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.