Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004473

Physical Location & Seq

Genomic Coordinates Forward (+)

3765214 .. 3767105

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGATTCTCTCTCATCGGTAAAAGTGCTTCCCTCCGTAGTCACCAACCCTCTCTGTCCACGGCGACGCCGGATGCCTCCCCCTTATTCTTCTTCGCTCGGCAGCTTACACAATCGAAGTCTCTGCCGATTCTCCTCCTCCTCCTCTGTATTCGGTGTGCCGTGCTCTCCCTATTCCAGAAGGAGGTTCGTGTGCCCGTCCGGCGGCGGCGGCACTGCGCAGGAGGACGAGGAGGATGGCGACGACGACGACGACGACGGAAGTGAGCAGGTGGAGAAAGCGCTTCACCTCGACGGTAATATCCCTTCCACGTCCGACGAGTTCGTGAAACGCGTGTCGTCTCGTGCTTACGACATGCGCCGCCACCTCCAGCAGACCTTCGATTCCAGCAGCTACGATGTATTGGAGGCCAACCCTTGGAGAGGACGTTCCAAGCCTGTGTATGTATTAACCCAAAGGGAAAACCAGTTGTGCACCATGAAAACCCGAAGAAATCGCAGTGAAGTTGAAACGGAGCTTGGGAAACTGTTCTCAAAAAGAGGGAAGTGGAATCAAAAGAAGCAGCCGACGAACGAGACAAAGTTCCAGATGCTTGTGGAGGATATTAGAGATGGAGTGCTTGTTTTCGAGGATGAGAACGAAGCTGTAAGGTATTGTGACTTGTTGCAAGGAGGAGGTAAAGGTTGTGAAGGTGTTGCAGAAATAGAGGCCTCATCAGTATTCGATCTCTGCCAGAAAATGCGAGCTTTAGCAGTTCTGTTCCGTCGCGGAATAAGCCCTCCTCTGCCTCAAAGCCTGGAGCTCAACCTTAGGGCTCGAAAGCGCTCGCTTGAAGACGAACAAGAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3110

Protein Analysis

284

Amino Acids

31.92

Weight (kDa)

6.38

Isoelectric Point (pI)

81.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13990 AT1G13990 AT1G13990
fragaria_vesca	FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770
malus_domestica	MD13G1068600.v1.1 MD16G1067400.v1.1
prunus_persica	Prupe.1G279300_v2.0.a1
pyrus_communis	pycom13g06040 pycom16g05890
rosa_chinensis	RchiOBHm_Chr4g0439161
rosa_laevigata	RLG00000006292
rosa_multiflora	Rmu_sc0002236.1_g000007 Rmu_sc0027506.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380140
rosa_rugosa	Rorug04G0316300 Rorug04G0316400
rosa_samantha	Rh4AG367100 Rh4BG378700 Rh4CG393000 Rh4DG373300
rosa_wichuraiana	Rw0G011690 Rw5G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	259
Acc16I	TGCGCA	1 cut(s)	219
Acc36I	ACCTGC	1 cut(s)	259
AccB7I	CCANNNNNTGG	1 cut(s)	417
AccII	CGCG	2 cut(s)	333, 768
AciI	CCGC	5 cut(s)	204, 207, 210, 361, 768
AcyI	GRCGYC	1 cut(s)	67
AfeI	AGCGCT	2 cut(s)	282, 824
AfiI	CCNNNNNNNGG	4 cut(s)	183, 203, 417, 422
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	509, 833
AjiI	CACGTC	1 cut(s)	312
AjnI	CCWGG	1 cut(s)	795
AjuI	GAANNNNNNNTTGG	2 cut(s)	501, 533
AloI	GAACNNNNNNTCC	2 cut(s)	412, 444
AluBI	AGCT	6 cut(s)	105, 393, 517, 644, 746, 802
AluI	AGCT	6 cut(s)	105, 393, 517, 644, 746, 802
Alw21I	GWGCWC	3 cut(s)	167, 476, 804
Alw26I	GTCTC	3 cut(s)	125, 345, 569
Alw44I	GTGCAC	1 cut(s)	472
Aor51HI	AGCGCT	2 cut(s)	282, 824
AoxI	GGCC	2 cut(s)	408, 708
ApaLI	GTGCAC	1 cut(s)	472
ApeKI	GCWGC	3 cut(s)	102, 390, 562
Asp700I	GAANNNNTTC	1 cut(s)	527
AspLEI	GCGC	4 cut(s)	220, 283, 360, 825
AsuHPI	GGTGA	2 cut(s)	34, 278
AxyI	CCTNAGG	1 cut(s)	809
BaeGI	GKGCMC	2 cut(s)	197, 476
BanII	GRGCYC	2 cut(s)	804, 817
BarI	GAAGNNNNNNTAC	4 cut(s)	12, 44, 289, 321
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	840
Bbv12I	GWGCWC	3 cut(s)	167, 476, 804
BbvI	GCAGC	3 cut(s)	114, 402, 574
BccI	CCATC	2 cut(s)	230, 605
BceAI	ACGGC	2 cut(s)	77, 145
BcgI	CGANNNNNNTGC	2 cut(s)	105, 139
BciT130I	CCWGG	1 cut(s)	797
BcoDI	GTCTC	3 cut(s)	125, 345, 569
BfoI	RGCGCY	2 cut(s)	284, 826
BfuAI	ACCTGC	1 cut(s)	259
BglI	GCCNNNNNGGC	1 cut(s)	201
BisI	GCNGC	7 cut(s)	103, 205, 208, 211, 361, 391, 563
BlsI	GCNGC	7 cut(s)	104, 206, 209, 212, 362, 392, 564
Bme1390I	CCNGG	1 cut(s)	797
BmgBI	CACGTC	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	797
BmsI	GCATC	2 cut(s)	63, 579
BpiI	GAAGAC	1 cut(s)	840
BpmI	CTGGAG	2 cut(s)	353, 818
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	59, 416
BsaXI	ACNNNNNCTCC	4 cut(s)	412, 442, 606, 636
Bsc4I	CCNNNNNNNGG	4 cut(s)	183, 203, 417, 422
Bse1I	ACTGG	1 cut(s)	466
Bse21I	CCTNAGG	1 cut(s)	809
BseBI	CCWGG	1 cut(s)	797
BseDI	CCNNGG	2 cut(s)	59, 416
BseGI	GGATG	3 cut(s)	78, 241, 637
BseLI	CCNNNNNNNGG	4 cut(s)	183, 203, 417, 422
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	7 cut(s)	124, 127, 130, 133, 245, 687, 771
BseSI	GKGCMC	2 cut(s)	197, 476
BseXI	GCAGC	3 cut(s)	114, 402, 574
Bsh1236I	CGCG	2 cut(s)	333, 768
BshFI	GGCC	2 cut(s)	410, 710
BsiHKAI	GWGCWC	3 cut(s)	167, 476, 804
BsiSI	CCGG	2 cut(s)	70, 201
BslI	CCNNNNNNNGG	4 cut(s)	183, 203, 417, 422
BsmAI	GTCTC	3 cut(s)	125, 345, 569
BsmBI	CGTCTC	1 cut(s)	345
BsnI	GGCC	2 cut(s)	410, 710
Bsp1286I	GDGCHC	5 cut(s)	167, 197, 476, 804, 817
Bsp143I	GATC	1 cut(s)	724
BspACI	CCGC	5 cut(s)	204, 207, 210, 361, 768
BspANI	GGCC	2 cut(s)	410, 710
BspFNI	CGCG	2 cut(s)	333, 768
BspMI	ACCTGC	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	2 cut(s)	59, 416
BssMI	GATC	1 cut(s)	724
BssNI	GRCGYC	1 cut(s)	67
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	416
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	797
Bst4CI	ACNGT	2 cut(s)	296, 528
BstACI	GRCGYC	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	744, 827
BstDEI	CTNAG	1 cut(s)	809
BstDSI	CCRYGG	1 cut(s)	59
BstENI	CCTNNNNNAGG	1 cut(s)	420
BstF5I	GGATG	3 cut(s)	78, 241, 637
BstFNI	CGCG	2 cut(s)	333, 768
BstH2I	RGCGCY	2 cut(s)	284, 826
BstHHI	GCGC	4 cut(s)	220, 283, 360, 825
BstKTI	GATC	1 cut(s)	727
BstMAI	GTCTC	3 cut(s)	125, 345, 569
BstMBI	GATC	1 cut(s)	724
BstMWI	GCNNNNNNNGC	3 cut(s)	201, 210, 774
BstNI	CCWGG	1 cut(s)	797
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	795
BstSLI	GKGCMC	2 cut(s)	197, 476
BstUI	CGCG	2 cut(s)	333, 768
BstV1I	GCAGC	3 cut(s)	114, 402, 574
BstV2I	GAAGAC	1 cut(s)	840
Bsu36I	CCTNAGG	1 cut(s)	809
BsuRI	GGCC	2 cut(s)	410, 710
BtgI	CCRYGG	1 cut(s)	59
BtrI	CACGTC	1 cut(s)	312
BtsCI	GGATG	3 cut(s)	78, 241, 637
BtsI	GCAGTG	2 cut(s)	213, 505
BtsIMutI	CAGTG	2 cut(s)	213, 505
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	2 cut(s)	744, 827
CfoI	GCGC	4 cut(s)	220, 283, 360, 825
CseI	GACGC	1 cut(s)	75
CviAII	CATG	2 cut(s)	355, 478
DdeI	CTNAG	1 cut(s)	809
DpnI	GATC	1 cut(s)	726
DpnII	GATC	1 cut(s)	724
Ecl136II	GAGCTC	1 cut(s)	802
Eco130I	CCWWGG	1 cut(s)	416
Eco147I	AGGCCT	1 cut(s)	710
Eco24I	GRGCYC	2 cut(s)	804, 817
Eco47III	AGCGCT	2 cut(s)	282, 824
Eco53kI	GAGCTC	1 cut(s)	802
Eco81I	CCTNAGG	1 cut(s)	809
EcoICRI	GAGCTC	1 cut(s)	802
EcoNI	CCTNNNNNAGG	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	795
EcoT14I	CCWWGG	1 cut(s)	416
EcoT38I	GRGCYC	2 cut(s)	804, 817
ErhI	CCWWGG	1 cut(s)	416
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	2 cut(s)	358, 481
FaiI	YATR	4 cut(s)	356, 444, 479, 850
FatI	CATG	2 cut(s)	354, 477
Fnu4HI	GCNGC	7 cut(s)	103, 205, 208, 211, 361, 391, 563
FokI	GGATG	3 cut(s)	85, 248, 644
FriOI	GRGCYC	2 cut(s)	804, 817
Fsp4HI	GCNGC	7 cut(s)	103, 205, 208, 211, 361, 391, 563
FspI	TGCGCA	1 cut(s)	219
GlaI	GCGC	4 cut(s)	219, 282, 359, 824
GluI	GCNGC	7 cut(s)	103, 205, 208, 211, 361, 391, 563
GsuI	CTGGAG	2 cut(s)	353, 818
HaeII	RGCGCY	2 cut(s)	284, 826
HaeIII	GGCC	2 cut(s)	410, 710
HapII	CCGG	2 cut(s)	70, 201
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	4 cut(s)	220, 283, 360, 825
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	358, 481
Hin6I	GCGC	4 cut(s)	218, 281, 358, 823
HinP1I	GCGC	4 cut(s)	218, 281, 358, 823
HinfI	GANTC	4 cut(s)	5, 129, 383, 550
HpaII	CCGG	2 cut(s)	70, 201
HphI	GGTGA	2 cut(s)	34, 278
Hpy166II	GTNNAC	2 cut(s)	59, 474
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	3 cut(s)	177, 325, 586
Hpy8I	GTNNAC	2 cut(s)	59, 474
HpyAV	CCTTC	4 cut(s)	174, 315, 388, 683
HpyCH4III	ACNGT	2 cut(s)	296, 528
HpyCH4IV	ACGT	2 cut(s)	311, 427
HpyCH4V	TGCA	3 cut(s)	474, 667, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	201, 210, 774
HpyF3I	CTNAG	1 cut(s)	809
HpySE526I	ACGT	2 cut(s)	311, 427
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	2 cut(s)	358, 481
HspAI	GCGC	4 cut(s)	218, 281, 358, 823
Kzo9I	GATC	1 cut(s)	724
LmnI	GCTCC	2 cut(s)	514, 799
Lsp1109I	GCAGC	3 cut(s)	114, 402, 574
LweI	GCATC	2 cut(s)	63, 579
MaeII	ACGT	2 cut(s)	311, 427
MaeIII	GTNAC	2 cut(s)	40, 656
MalI	GATC	1 cut(s)	726
MboI	GATC	1 cut(s)	724
MboII	GAAGA	4 cut(s)	81, 84, 501, 845
MhlI	GDGCHC	5 cut(s)	167, 197, 476, 804, 817
MluI	ACGCGT	1 cut(s)	331
MmeI	TCCRAC	1 cut(s)	339
MroXI	GAANNNNTTC	1 cut(s)	527
MseI	TTAA	1 cut(s)	449
MspI	CCGG	2 cut(s)	70, 201
MspR9I	CCNGG	1 cut(s)	797
MvaI	CCWGG	1 cut(s)	797
MvnI	CGCG	2 cut(s)	333, 768
MwoI	GCNNNNNNNGC	3 cut(s)	201, 210, 774
NdeII	GATC	1 cut(s)	724
NlaIII	CATG	2 cut(s)	358, 481
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	40, 656
NsbI	TGCGCA	1 cut(s)	219
NspI	RCATGY	1 cut(s)	358
PaqCI	CACCTGC	1 cut(s)	259
PceI	AGGCCT	1 cut(s)	710
PcsI	WCGNNNNNNNCGW	3 cut(s)	249, 252, 330
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	4 cut(s)	5, 129, 383, 550
PflMI	CCANNNNNTGG	1 cut(s)	417
PkrI	GCNGC	7 cut(s)	104, 206, 209, 212, 362, 392, 564
Psp124BI	GAGCTC	1 cut(s)	804
Psp6I	CCWGG	1 cut(s)	795
PspGI	CCWGG	1 cut(s)	795
SacI	GAGCTC	1 cut(s)	804
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	7 cut(s)	103, 205, 208, 211, 361, 391, 563
Sau3AI	GATC	1 cut(s)	724
ScrFI	CCNGG	1 cut(s)	797
SduI	GDGCHC	5 cut(s)	167, 197, 476, 804, 817
SfaNI	GCATC	2 cut(s)	63, 579
SseBI	AGGCCT	1 cut(s)	710
SsiI	CCGC	5 cut(s)	204, 207, 210, 361, 768
SstI	GAGCTC	1 cut(s)	804
StuI	AGGCCT	1 cut(s)	710
StyD4I	CCNGG	1 cut(s)	795
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	2 cut(s)	296, 528
TaiI	ACGT	2 cut(s)	314, 430
TaqI	TCGA	6 cut(s)	115, 291, 381, 627, 723, 817
TauI	GCSGC	4 cut(s)	207, 210, 213, 363
TfiI	GAWTC	4 cut(s)	5, 129, 383, 550
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	2 cut(s)	220, 505
TseFI	GTSAC	2 cut(s)	40, 656
TseI	GCWGC	3 cut(s)	102, 390, 562
Tsp45I	GTSAC	2 cut(s)	40, 656
TspDTI	ATGAA	1 cut(s)	494
TspGWI	ACGGA	4 cut(s)	25, 273, 527, 752
TspRI	CASTG	2 cut(s)	220, 505
Van91I	CCANNNNNTGG	1 cut(s)	417
VneI	GTGCAC	1 cut(s)	472
XagI	CCTNNNNNAGG	1 cut(s)	420
XceI	RCATGY	1 cut(s)	358
XmnI	GAANNNNTTC	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.