Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002236.1

Orthogroup ID

OG0004473

Physical Location & Seq

Genomic Coordinates Forward (+)

19384 .. 20837

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002236.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atggattccctctcatcggtttcgccctccataatcctccctcccaccgccaaccctctccgtccgcggcgccgccggatgagtttctctccggtcagcctacgcaaccgcaacctctgcctgtactctgttttccgagtgccgcgctctcccgatctctccagaaggcggttcggtctcagagaagcttcctgcaggtcggccggcggcggcggcggaggagctggggcaaatcaggaggaagaggattccgacgacgaaagtgagcaggtggagagggcccttcacctcgacggcagtattccttctacttctgatgagtttgtgaagcgcgtgtcctcacgcgcttacgatatgcggcggcacctccagcagaccttcgatagcagcagctatgatgtgttggaggctaatccttggagagaaacttccaagcctgtatatgtattaactcagagggagaaccagctgtgcacaatgaaaacacgaagaaatgtcagtgaagttgaaagggagcttgggcaattgttttccaaaggaggaaagtggaaccaagctaaacagcccagaaatggtaacaagttccagatgcttgttgaggatattagggatggagtgcttgttttcgaggatgcaaatgaagcagtgaagtactgtgatttgttgcaaggaggcggccaaggttgtgaaggtgttgcagaaatagaggcctcatcagtatttgctctgtgccagaaaatgagaggtctagcggttctgtttcgtcgcggaagaaagcctccgttgcctcagagcttggagctcaaccttagggccaggaagcgctcccttgaagaccaacaagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3110

Protein Analysis

282

Amino Acids

31.75

Weight (kDa)

9.08

Isoelectric Point (pI)

82.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13990 AT1G13990 AT1G13990
fragaria_vesca	FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770
malus_domestica	MD13G1068600.v1.1 MD16G1067400.v1.1
prunus_persica	Prupe.1G279300_v2.0.a1
pyrus_communis	pycom13g06040 pycom16g05890
rosa_chinensis	RchiOBHm_Chr4g0439161
rosa_laevigata	RLG00000006292
rosa_multiflora	Rmu_sc0002236.1_g000007 Rmu_sc0027506.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380140
rosa_rugosa	Rorug04G0316300 Rorug04G0316400
rosa_samantha	Rh4AG367100 Rh4BG378700 Rh4CG393000 Rh4DG373300
rosa_wichuraiana	Rw0G011690 Rw5G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	259
Acc36I	ACCTGC	2 cut(s)	186, 259
AccB1I	GGYRCC	2 cut(s)	69, 363
AccII	CGCG	5 cut(s)	67, 145, 333, 345, 768
AcoI	YGGCCR	2 cut(s)	201, 676
AcyI	GRCGYC	1 cut(s)	70
AfaI	GTAC	2 cut(s)	125, 653
AfeI	AGCGCT	1 cut(s)	824
AfiI	CCNNNNNNNGG	3 cut(s)	16, 168, 572
AgsI	TTSAA	2 cut(s)	509, 833
AjnI	CCWGG	1 cut(s)	815
AjuI	GAANNNNNNNTTGG	2 cut(s)	501, 533
AluBI	AGCT	8 cut(s)	188, 224, 393, 469, 517, 557, 795, 802
AluI	AGCT	8 cut(s)	188, 224, 393, 469, 517, 557, 795, 802
Alw21I	GWGCWC	2 cut(s)	476, 804
Alw26I	GTCTC	1 cut(s)	182
Alw44I	GTGCAC	1 cut(s)	472
Aor51HI	AGCGCT	1 cut(s)	824
AoxI	GGCC	5 cut(s)	201, 279, 676, 708, 813
ApaI	GGGCCC	1 cut(s)	283
ApaLI	GTGCAC	1 cut(s)	472
ApeKI	GCWGC	2 cut(s)	387, 390
AspLEI	GCGC	5 cut(s)	72, 147, 333, 347, 825
AspS9I	GGNCC	3 cut(s)	279, 280, 813
AsuHPI	GGTGA	1 cut(s)	278
AxyI	CCTNAGG	1 cut(s)	809
BaeGI	GKGCMC	2 cut(s)	283, 476
BanI	GGYRCC	2 cut(s)	69, 363
BanII	GRGCYC	2 cut(s)	283, 804
BbsI	GAAGAC	1 cut(s)	840
Bbv12I	GWGCWC	2 cut(s)	476, 804
BbvI	GCAGC	2 cut(s)	399, 402
BccI	CCATC	1 cut(s)	605
BceAI	ACGGC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	817
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	749
BfmI	CTRYAG	1 cut(s)	193
BfoI	RGCGCY	2 cut(s)	73, 826
BfuAI	ACCTGC	2 cut(s)	186, 259
BmcAI	AGTACT	1 cut(s)	653
Bme1390I	CCNGG	1 cut(s)	817
BmgT120I	GGNCC	3 cut(s)	279, 280, 813
BmiI	GGNNCC	4 cut(s)	71, 281, 365, 551
BmrFI	CCNGG	1 cut(s)	817
BmsI	GCATC	2 cut(s)	579, 622
BpiI	GAAGAC	1 cut(s)	840
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
BpmI	CTGGAG	2 cut(s)	145, 353
BsaHI	GRCGYC	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	3 cut(s)	65, 416, 679
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 168, 572
Bse118I	RCCGGY	1 cut(s)	203
Bse21I	CCTNAGG	1 cut(s)	809
BseBI	CCWGG	1 cut(s)	817
BseDI	CCNNGG	3 cut(s)	65, 416, 679
BseGI	GGATG	3 cut(s)	84, 616, 637
BseLI	CCNNNNNNNGG	3 cut(s)	16, 168, 572
BseMII	CTCAG	3 cut(s)	193, 467, 803
BseRI	GAGGAG	1 cut(s)	234
BseSI	GKGCMC	2 cut(s)	283, 476
BseX3I	CGGCCG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	399, 402
BseYI	CCCAGC	1 cut(s)	224
Bsh1236I	CGCG	5 cut(s)	67, 145, 333, 345, 768
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	5 cut(s)	203, 281, 678, 710, 815
BshNI	GGYRCC	2 cut(s)	69, 363
BsiEI	CGRYCG	1 cut(s)	204
BsiHKAI	GWGCWC	2 cut(s)	476, 804
BsiSI	CCGG	3 cut(s)	76, 92, 204
BslI	CCNNNNNNNGG	3 cut(s)	16, 168, 572
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	5 cut(s)	203, 281, 678, 710, 815
Bso31I	GGTCTC	1 cut(s)	182
Bsp120I	GGGCCC	1 cut(s)	279
Bsp1286I	GDGCHC	3 cut(s)	283, 476, 804
Bsp143I	GATC	1 cut(s)	154
BspANI	GGCC	5 cut(s)	203, 281, 678, 710, 815
BspCNI	CTCAG	3 cut(s)	192, 466, 802
BspFNI	CGCG	5 cut(s)	67, 145, 333, 345, 768
BspLI	GGNNCC	4 cut(s)	71, 281, 365, 551
BspMAI	CTGCAG	1 cut(s)	197
BspMI	ACCTGC	2 cut(s)	186, 259
BspT107I	GGYRCC	2 cut(s)	69, 363
BspTNI	GGTCTC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	65, 416, 679
BssMI	GATC	1 cut(s)	154
BssNI	GRCGYC	1 cut(s)	70
BssT1I	CCWWGG	2 cut(s)	416, 679
Bst2UI	CCWGG	1 cut(s)	817
Bst4CI	ACNGT	1 cut(s)	656
Bst6I	CTCTTC	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	4 cut(s)	179, 453, 789, 809
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	3 cut(s)	84, 616, 637
BstFNI	CGCG	5 cut(s)	67, 145, 333, 345, 768
BstH2I	RGCGCY	2 cut(s)	73, 826
BstHHI	GCGC	5 cut(s)	72, 147, 333, 347, 825
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	154
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 213, 370, 641, 784
BstNI	CCWGG	1 cut(s)	817
BstSCI	CCNGG	1 cut(s)	815
BstSFI	CTRYAG	1 cut(s)	193
BstSLI	GKGCMC	2 cut(s)	283, 476
BstUI	CGCG	5 cut(s)	67, 145, 333, 345, 768
BstV1I	GCAGC	2 cut(s)	399, 402
BstV2I	GAAGAC	1 cut(s)	840
BstZI	CGGCCG	1 cut(s)	201
Bsu36I	CCTNAGG	1 cut(s)	809
BsuRI	GGCC	5 cut(s)	203, 281, 678, 710, 815
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	84, 616, 637
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	2 cut(s)	505, 651
BveI	ACCTGC	2 cut(s)	186, 259
Cac8I	GCNNGC	1 cut(s)	205
CfoI	GCGC	5 cut(s)	72, 147, 333, 347, 825
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	3 cut(s)	279, 280, 813
Cfr42I	CCGCGG	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	124, 652
CviQI	GTAC	2 cut(s)	124, 652
DdeI	CTNAG	4 cut(s)	179, 453, 789, 809
DinI	GGCGCC	1 cut(s)	71
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
EaeI	YGGCCR	2 cut(s)	201, 676
EagI	CGGCCG	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	231
Ecl136II	GAGCTC	1 cut(s)	802
EclXI	CGGCCG	1 cut(s)	201
Eco130I	CCWWGG	2 cut(s)	416, 679
Eco147I	AGGCCT	1 cut(s)	710
Eco24I	GRGCYC	2 cut(s)	283, 804
Eco31I	GGTCTC	1 cut(s)	182
Eco47III	AGCGCT	1 cut(s)	824
Eco52I	CGGCCG	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	802
Eco81I	CCTNAGG	1 cut(s)	809
EcoICRI	GAGCTC	1 cut(s)	802
EcoO109I	RGGNCCY	2 cut(s)	279, 280
EcoRII	CCWGG	1 cut(s)	815
EcoT14I	CCWWGG	2 cut(s)	416, 679
EcoT38I	GRGCYC	2 cut(s)	283, 804
EgeI	GGCGCC	1 cut(s)	71
EheI	GGCGCC	1 cut(s)	71
ErhI	CCWWGG	2 cut(s)	416, 679
FaiI	YATR	5 cut(s)	32, 356, 396, 442, 444
FokI	GGATG	3 cut(s)	91, 623, 644
FriOI	GRGCYC	2 cut(s)	283, 804
FspBI	CTAG	1 cut(s)	749
GlaI	GCGC	5 cut(s)	71, 146, 332, 346, 824
GsaI	CCCAGC	1 cut(s)	228
GsuI	CTGGAG	2 cut(s)	145, 353
HaeII	RGCGCY	2 cut(s)	73, 826
HaeIII	GGCC	5 cut(s)	203, 281, 678, 710, 815
HapII	CCGG	3 cut(s)	76, 92, 204
HhaI	GCGC	5 cut(s)	72, 147, 333, 347, 825
Hin1I	GRCGYC	1 cut(s)	70
Hin6I	GCGC	5 cut(s)	70, 145, 331, 345, 823
HinP1I	GCGC	5 cut(s)	70, 145, 331, 345, 823
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	2 cut(s)	5, 248
HpaII	CCGG	3 cut(s)	76, 92, 204
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	474
Hpy188I	TCNGA	6 cut(s)	137, 182, 253, 316, 456, 792
Hpy188III	TCNNGA	4 cut(s)	152, 162, 236, 586
Hpy8I	GTNNAC	1 cut(s)	474
Hpy99I	CGWCG	4 cut(s)	257, 260, 296, 768
HpyAV	CCTTC	5 cut(s)	159, 293, 315, 388, 683
HpyCH4III	ACNGT	1 cut(s)	656
HpyCH4V	TGCA	5 cut(s)	195, 474, 635, 667, 698
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 213, 370, 641, 784
HpyF3I	CTNAG	4 cut(s)	179, 453, 789, 809
Hsp92I	GRCGYC	1 cut(s)	70
HspAI	GCGC	5 cut(s)	70, 145, 331, 345, 823
KasI	GGCGCC	1 cut(s)	69
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
KspI	CCGCGG	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	4 cut(s)	221, 514, 799, 830
Lsp1109I	GCAGC	2 cut(s)	399, 402
LweI	GCATC	2 cut(s)	579, 622
MaeI	CTAG	1 cut(s)	749
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	4 cut(s)	254, 501, 783, 845
MfeI	CAATTG	1 cut(s)	524
MhlI	GDGCHC	3 cut(s)	283, 476, 804
MluCI	AATT	1 cut(s)	524
Mly113I	GGCGCC	1 cut(s)	70
MmeI	TCCRAC	2 cut(s)	276, 384
MroNI	GCCGGC	1 cut(s)	203
MseI	TTAA	1 cut(s)	449
MspA1I	CMGCKG	2 cut(s)	67, 469
MspI	CCGG	3 cut(s)	76, 92, 204
MspR9I	CCNGG	1 cut(s)	817
MunI	CAATTG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	817
MvnI	CGCG	5 cut(s)	67, 145, 333, 345, 768
MwoI	GCNNNNNNNGC	5 cut(s)	117, 213, 370, 641, 784
NaeI	GCCGGC	1 cut(s)	205
NarI	GGCGCC	1 cut(s)	70
NdeII	GATC	1 cut(s)	154
NgoMIV	GCCGGC	1 cut(s)	203
NlaIV	GGNNCC	4 cut(s)	71, 281, 365, 551
PaqCI	CACCTGC	1 cut(s)	259
PceI	AGGCCT	1 cut(s)	710
PdiI	GCCGGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	5, 248
PluTI	GGCGCC	1 cut(s)	73
Psp124BI	GAGCTC	1 cut(s)	804
Psp6I	CCWGG	1 cut(s)	815
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	815
PspN4I	GGNNCC	4 cut(s)	71, 281, 365, 551
PspOMI	GGGCCC	1 cut(s)	279
PspPI	GGNCC	3 cut(s)	279, 280, 813
PstI	CTGCAG	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	469
RsaI	GTAC	2 cut(s)	125, 653
RsaNI	GTAC	2 cut(s)	124, 652
SacI	GAGCTC	1 cut(s)	804
SacII	CCGCGG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	449
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	3 cut(s)	279, 280, 813
SbfI	CCTGCAGG	1 cut(s)	197
ScaI	AGTACT	1 cut(s)	653
ScrFI	CCNGG	1 cut(s)	817
SdaI	CCTGCAGG	1 cut(s)	197
SduI	GDGCHC	3 cut(s)	283, 476, 804
SfaNI	GCATC	2 cut(s)	579, 622
SfcI	CTRYAG	1 cut(s)	193
SfoI	GGCGCC	1 cut(s)	71
Sfr303I	CCGCGG	1 cut(s)	68
SgrBI	CCGCGG	1 cut(s)	68
Sse8387I	CCTGCAGG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	524
SseBI	AGGCCT	1 cut(s)	710
SspDI	GGCGCC	1 cut(s)	69
SspMI	CTAG	1 cut(s)	749
SstI	GAGCTC	1 cut(s)	804
StuI	AGGCCT	1 cut(s)	710
StyD4I	CCNGG	1 cut(s)	815
StyI	CCWWGG	2 cut(s)	416, 679
TaaI	ACNGT	1 cut(s)	656
TaqI	TCGA	3 cut(s)	291, 381, 627
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	1 cut(s)	524
TatI	WGTACW	2 cut(s)	123, 651
TauI	GCSGC	9 cut(s)	70, 75, 145, 210, 213, 216, 361, 364, 678
TfiI	GAWTC	2 cut(s)	5, 248
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	2 cut(s)	505, 651
TseI	GCWGC	2 cut(s)	387, 390
TspDTI	ATGAA	2 cut(s)	494, 654
TspGWI	ACGGA	2 cut(s)	50, 771
TspRI	CASTG	2 cut(s)	505, 651
VneI	GTGCAC	1 cut(s)	472
XspI	CTAG	1 cut(s)	749
ZrmI	AGTACT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.