Rw0G011690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00508
OG0004473
Physical Location & Seq
Reverse (-)
86849 .. 88731
1883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G011690.1

Sequence Viewer

Length: 753 bp
ATGGATTCCCTCTCATCGGTTTCTCCCTCCATAATCCTCCCTCCGACCGCCAACCCTCTCCGTCCGCGGCGCCGCCGGATGAGTTTCTCTCCGGTCAGCCTACGCAACCGCAACCTCTGCCTGTACTCTGTTTTCCGAGTGCCGCGCTCTCCCGATCTCTCCAGAAGGCGGTTCGGTCTCAGAGAAGCTTCCTGCAGGTCGGCCGCCGGCGGCGGCGGAGGAGCTGGGGAAAATCAGGAGGAAGAGGATTCCGACGACGAAAGTGAGCAGGTGGAGAGGGCCCTTCACCTCGACGGCAGTATTCCTTCTACTTCCGATGAGTTTGTGAAGCGCGTGTCCTCACGCGCTTACGATATGCGGCGGCACCTCCAGCAGACCTTCGATAGCAGCAGCTATGATGTGTTGGAGGCTAATCCTTGGAGAGAAACTTCCAAGCCTGTATATGTATTAACTCAGAGGGAGAACCAGCTGTGCACAATGAAAACACGAAGAAATGTCAGTGAAGTTGAAAGGGAGCTTGGGCAATTGTTTTCCAAAGGAGGAAAGTGGAACCAAGCTAAACAGCCCAGAAATGGTAACAAGTTCCAGATGCTTGTTGAGGATATTAGGGATGGAGTGCTTGTTTTCGAGGATGCAAATGAAGCAGTGAAGTACTGTGATTTGTTGCAAGGAGGCGGCCGAGGTTGTGAAGGTGTTGCAGAAATAGAGGCCTCATCAGTAAGGAACAGAGCAATGGCTTCGATGTATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3110

Protein Analysis

250

Amino Acids

28.12

Weight (kDa)

8.28

Isoelectric Point (pI)

80.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 259
Acc36I ACCTGC 2 cut(s) 186, 259
AccB1I GGYRCC 2 cut(s) 69, 363
AccI GTMKAC 1 cut(s) 746
AccII CGCG 4 cut(s) 67, 145, 333, 345
AcoI YGGCCR 2 cut(s) 201, 676
AcyI GRCGYC 1 cut(s) 70
AfaI GTAC 2 cut(s) 125, 653
AfiI CCNNNNNNNGG 3 cut(s) 16, 168, 572
AgsI TTSAA 1 cut(s) 509
AjuI GAANNNNNNNTTGG 2 cut(s) 501, 533
AluBI AGCT 6 cut(s) 188, 224, 393, 469, 517, 557
AluI AGCT 6 cut(s) 188, 224, 393, 469, 517, 557
Alw21I GWGCWC 1 cut(s) 476
Alw26I GTCTC 1 cut(s) 182
Alw44I GTGCAC 1 cut(s) 472
AoxI GGCC 4 cut(s) 201, 279, 676, 708
ApaI GGGCCC 1 cut(s) 283
ApaLI GTGCAC 1 cut(s) 472
ApeKI GCWGC 2 cut(s) 387, 390
AspLEI GCGC 4 cut(s) 72, 147, 333, 347
AspS9I GGNCC 2 cut(s) 279, 280
AsuHPI GGTGA 1 cut(s) 278
BaeGI GKGCMC 2 cut(s) 283, 476
BanI GGYRCC 2 cut(s) 69, 363
BanII GRGCYC 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 476
BbvI GCAGC 2 cut(s) 399, 402
BccI CCATC 1 cut(s) 605
BceAI ACGGC 1 cut(s) 310
BcgI CGANNNNNNTGC 1 cut(s) 720
BcoDI GTCTC 1 cut(s) 182
BfmI CTRYAG 1 cut(s) 193
BfoI RGCGCY 1 cut(s) 73
BfuAI ACCTGC 2 cut(s) 186, 259
BmcAI AGTACT 1 cut(s) 653
BmgT120I GGNCC 2 cut(s) 279, 280
BmiI GGNNCC 4 cut(s) 71, 281, 365, 551
BmsI GCATC 2 cut(s) 579, 622
BplI GAGNNNNNCTC 2 cut(s) 73, 105
BpmI CTGGAG 2 cut(s) 145, 353
BsaHI GRCGYC 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 3 cut(s) 65, 416, 679
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 606, 636
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 168, 572
Bse118I RCCGGY 1 cut(s) 206
Bse3DI GCAATG 1 cut(s) 738
BseDI CCNNGG 3 cut(s) 65, 416, 679
BseGI GGATG 3 cut(s) 84, 616, 637
BseLI CCNNNNNNNGG 3 cut(s) 16, 168, 572
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 2 cut(s) 193, 467
BseRI GAGGAG 1 cut(s) 234
BseSI GKGCMC 2 cut(s) 283, 476
BseX3I CGGCCG 2 cut(s) 201, 676
BseXI GCAGC 2 cut(s) 399, 402
BseYI CCCAGC 1 cut(s) 224
Bsh1236I CGCG 4 cut(s) 67, 145, 333, 345
Bsh1285I CGRYCG 3 cut(s) 48, 204, 679
BshFI GGCC 4 cut(s) 203, 281, 678, 710
BshNI GGYRCC 2 cut(s) 69, 363
BsiEI CGRYCG 3 cut(s) 48, 204, 679
BsiHKAI GWGCWC 1 cut(s) 476
BsiSI CCGG 3 cut(s) 76, 92, 207
BslI CCNNNNNNNGG 3 cut(s) 16, 168, 572
BsmAI GTCTC 1 cut(s) 182
BsnI GGCC 4 cut(s) 203, 281, 678, 710
Bso31I GGTCTC 1 cut(s) 182
Bsp120I GGGCCC 1 cut(s) 279
Bsp1286I GDGCHC 2 cut(s) 283, 476
Bsp143I GATC 1 cut(s) 154
BspANI GGCC 4 cut(s) 203, 281, 678, 710
BspCNI CTCAG 2 cut(s) 192, 466
BspFNI CGCG 4 cut(s) 67, 145, 333, 345
BspLI GGNNCC 4 cut(s) 71, 281, 365, 551
BspMAI CTGCAG 1 cut(s) 197
BspMI ACCTGC 2 cut(s) 186, 259
BspT107I GGYRCC 2 cut(s) 69, 363
BspTNI GGTCTC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 738
BsrFI RCCGGY 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 3 cut(s) 65, 416, 679
BssMI GATC 1 cut(s) 154
BssNAI GTATAC 1 cut(s) 747
BssNI GRCGYC 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 416
Bst1107I GTATAC 1 cut(s) 747
Bst4CI ACNGT 1 cut(s) 656
Bst6I CTCTTC 1 cut(s) 237
BstACI GRCGYC 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 179, 453
BstDSI CCRYGG 1 cut(s) 65
BstF5I GGATG 3 cut(s) 84, 616, 637
BstFNI CGCG 4 cut(s) 67, 145, 333, 345
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 4 cut(s) 72, 147, 333, 347
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 1 cut(s) 154
BstMCI CGRYCG 3 cut(s) 48, 204, 679
BstMWI GCNNNNNNNGC 3 cut(s) 117, 370, 641
BstSFI CTRYAG 1 cut(s) 193
BstSLI GKGCMC 2 cut(s) 283, 476
BstUI CGCG 4 cut(s) 67, 145, 333, 345
BstV1I GCAGC 2 cut(s) 399, 402
BstZ17I GTATAC 1 cut(s) 747
BstZI CGGCCG 2 cut(s) 201, 676
BsuRI GGCC 4 cut(s) 203, 281, 678, 710
BtgI CCRYGG 1 cut(s) 65
BtsCI GGATG 3 cut(s) 84, 616, 637
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 2 cut(s) 505, 651
BveI ACCTGC 2 cut(s) 186, 259
Cac8I GCNNGC 1 cut(s) 208
CfoI GCGC 4 cut(s) 72, 147, 333, 347
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 2 cut(s) 279, 280
Cfr42I CCGCGG 1 cut(s) 68
Csp6I GTAC 2 cut(s) 124, 652
CviQI GTAC 2 cut(s) 124, 652
DdeI CTNAG 2 cut(s) 179, 453
DinI GGCGCC 1 cut(s) 71
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
EaeI YGGCCR 2 cut(s) 201, 676
EagI CGGCCG 2 cut(s) 201, 676
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
EciI GGCGGA 1 cut(s) 231
EclXI CGGCCG 2 cut(s) 201, 676
Eco130I CCWWGG 1 cut(s) 416
Eco147I AGGCCT 1 cut(s) 710
Eco24I GRGCYC 1 cut(s) 283
Eco31I GGTCTC 1 cut(s) 182
Eco52I CGGCCG 2 cut(s) 201, 676
EcoO109I RGGNCCY 2 cut(s) 279, 280
EcoT14I CCWWGG 1 cut(s) 416
EcoT38I GRGCYC 1 cut(s) 283
EgeI GGCGCC 1 cut(s) 71
EheI GGCGCC 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 416
FaiI YATR 6 cut(s) 32, 356, 396, 442, 444, 747
FblI GTMKAC 1 cut(s) 746
FokI GGATG 3 cut(s) 91, 623, 644
FriOI GRGCYC 1 cut(s) 283
GlaI GCGC 4 cut(s) 71, 146, 332, 346
GsaI CCCAGC 1 cut(s) 228
GsuI CTGGAG 2 cut(s) 145, 353
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 4 cut(s) 203, 281, 678, 710
HapII CCGG 3 cut(s) 76, 92, 207
HhaI GCGC 4 cut(s) 72, 147, 333, 347
Hin1I GRCGYC 1 cut(s) 70
Hin6I GCGC 4 cut(s) 70, 145, 331, 345
HinP1I GCGC 4 cut(s) 70, 145, 331, 345
HindIII AAGCTT 1 cut(s) 186
HinfI GANTC 2 cut(s) 5, 248
HpaII CCGG 3 cut(s) 76, 92, 207
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 2 cut(s) 474, 747
Hpy188I TCNGA 6 cut(s) 45, 137, 182, 253, 316, 456
Hpy188III TCNNGA 4 cut(s) 152, 162, 236, 586
Hpy8I GTNNAC 2 cut(s) 474, 747
Hpy99I CGWCG 3 cut(s) 257, 260, 296
HpyAV CCTTC 5 cut(s) 159, 293, 315, 388, 683
HpyCH4III ACNGT 1 cut(s) 656
HpyCH4V TGCA 5 cut(s) 195, 474, 635, 667, 698
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 370, 641
HpyF3I CTNAG 2 cut(s) 179, 453
Hsp92I GRCGYC 1 cut(s) 70
HspAI GCGC 4 cut(s) 70, 145, 331, 345
KasI GGCGCC 1 cut(s) 69
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
KspI CCGCGG 1 cut(s) 68
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 2 cut(s) 221, 514
Lsp1109I GCAGC 2 cut(s) 399, 402
LweI GCATC 2 cut(s) 579, 622
MaeIII GTNAC 1 cut(s) 575
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 2 cut(s) 254, 501
MfeI CAATTG 1 cut(s) 524
MhlI GDGCHC 2 cut(s) 283, 476
MluCI AATT 1 cut(s) 524
Mly113I GGCGCC 1 cut(s) 70
MmeI TCCRAC 3 cut(s) 68, 276, 384
MreI CGCCGGCG 1 cut(s) 206
MroNI GCCGGC 1 cut(s) 206
MseI TTAA 2 cut(s) 449, 751
MspA1I CMGCKG 2 cut(s) 67, 469
MspI CCGG 3 cut(s) 76, 92, 207
MunI CAATTG 1 cut(s) 524
MvnI CGCG 4 cut(s) 67, 145, 333, 345
MwoI GCNNNNNNNGC 3 cut(s) 117, 370, 641
NaeI GCCGGC 1 cut(s) 208
NarI GGCGCC 1 cut(s) 70
NdeII GATC 1 cut(s) 154
NgoMIV GCCGGC 1 cut(s) 206
NlaIV GGNNCC 4 cut(s) 71, 281, 365, 551
NmeAIII GCCGAG 1 cut(s) 704
PaqCI CACCTGC 1 cut(s) 259
PceI AGGCCT 1 cut(s) 710
PdiI GCCGGC 1 cut(s) 208
PfeI GAWTC 2 cut(s) 5, 248
PluTI GGCGCC 1 cut(s) 73
PspFI CCCAGC 1 cut(s) 224
PspN4I GGNNCC 4 cut(s) 71, 281, 365, 551
PspOMI GGGCCC 1 cut(s) 279
PspPI GGNCC 2 cut(s) 279, 280
PstI CTGCAG 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 469
RsaI GTAC 2 cut(s) 125, 653
RsaNI GTAC 2 cut(s) 124, 652
SacII CCGCGG 1 cut(s) 68
SaqAI TTAA 2 cut(s) 449, 751
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 2 cut(s) 279, 280
SbfI CCTGCAGG 1 cut(s) 197
ScaI AGTACT 1 cut(s) 653
SdaI CCTGCAGG 1 cut(s) 197
SduI GDGCHC 2 cut(s) 283, 476
SfaNI GCATC 2 cut(s) 579, 622
SfcI CTRYAG 1 cut(s) 193
SfoI GGCGCC 1 cut(s) 71
Sfr303I CCGCGG 1 cut(s) 68
SgrAI CRCCGGYG 1 cut(s) 206
SgrBI CCGCGG 1 cut(s) 68
Sse8387I CCTGCAGG 1 cut(s) 197
Sse9I AATT 1 cut(s) 524
SseBI AGGCCT 1 cut(s) 710
SspDI GGCGCC 1 cut(s) 69
StuI AGGCCT 1 cut(s) 710
StyI CCWWGG 1 cut(s) 416
TaaI ACNGT 1 cut(s) 656
TaqI TCGA 4 cut(s) 291, 381, 627, 740
TaqII GACCGA 1 cut(s) 164
TasI AATT 1 cut(s) 524
TatI WGTACW 2 cut(s) 123, 651
TauI GCSGC 9 cut(s) 70, 75, 145, 206, 213, 216, 361, 364, 678
TfiI GAWTC 2 cut(s) 5, 248
Tru1I TTAA 2 cut(s) 449, 751
Tru9I TTAA 2 cut(s) 449, 751
TscAI CASTG 2 cut(s) 505, 651
TseI GCWGC 2 cut(s) 387, 390
TspDTI ATGAA 2 cut(s) 494, 654
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 2 cut(s) 505, 651
VneI GTGCAC 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 746
ZrmI AGTACT 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.