Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004473

Physical Location & Seq

Genomic Coordinates Forward (+)

53356585 .. 53359159

Gene Structure 2575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG378700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGATTCCCTCTCATCGGTTTCGCCCTCCATAATCCTCCCTCCGACCGCCAACCCTCTCCGTCCGCGGCGCCGCCGGATGAGTTTCTCTCCGTTCAGCCTACGCAACCGCAACCTCTGCCTGTACTCTGTTTTCCGAGTGCCGCGCTCTCCCGATCTCTCCAGAAGGCGGTTCGGTCTCAGAGAAGCTTCCTGCAGGTCGGCCGGCGACGGAGGAGGAGGAGGAGGAGCTGGGGCAAATCAGGAGGAAGAGGATTCCGACGACGAAAGTGAGCAGGTGGAGAGGGCCCTTCACCTCGACGGCAGTATTCCTTCTACTTCCGATGAGTTTGTGAAGCGCGTGTCGTCACGCGCTTACGATATGCGGCGGCACCTCCAGCAGACCTTCGATAGCAGCAGCTATGATGTGTTGGAGGCTAATCCTTGGAGAGAAACTTCCAAGCCTGTATATGTATTAACTCAGAGGGAGAACCAGCTGTGCACAATGAAAACACGAAGAAATGTCAGTGAAGTTGAAAGGGAGCTTGGGCAATTGTTTTCCAAAGGAGGAAAGTGGAGCCAAGCTAAACAGCCCAGAAATGGTAACAAGTTCCAGATGCTTGTTGAGGATATTAGGGATGGCGTGCTTGTAAGCTTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3110

Protein Analysis

213

Amino Acids

24.08

Weight (kDa)

9.32

Isoelectric Point (pI)

84.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13990 AT1G13990 AT1G13990
fragaria_vesca	FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770 FvH4_4g30770
malus_domestica	MD13G1068600.v1.1 MD16G1067400.v1.1
prunus_persica	Prupe.1G279300_v2.0.a1
pyrus_communis	pycom13g06040 pycom16g05890
rosa_chinensis	RchiOBHm_Chr4g0439161
rosa_laevigata	RLG00000006292
rosa_multiflora	Rmu_sc0002236.1_g000007 Rmu_sc0027506.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380140
rosa_rugosa	Rorug04G0316300 Rorug04G0316400
rosa_samantha	Rh4AG367100 Rh4BG378700 Rh4CG393000 Rh4DG373300
rosa_wichuraiana	Rw0G011690 Rw5G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	2 cut(s)	186, 265
AccB1I	GGYRCC	2 cut(s)	69, 369
AccII	CGCG	4 cut(s)	67, 145, 339, 351
AciI	CCGC	9 cut(s)	48, 65, 67, 73, 109, 143, 169, 364, 367
AcoI	YGGCCR	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	70
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	16, 168, 578
AgsI	TTSAA	1 cut(s)	515
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	7 cut(s)	188, 230, 399, 475, 523, 563, 633
AluI	AGCT	7 cut(s)	188, 230, 399, 475, 523, 563, 633
Alw21I	GWGCWC	1 cut(s)	482
Alw26I	GTCTC	1 cut(s)	182
Alw44I	GTGCAC	1 cut(s)	478
AoxI	GGCC	2 cut(s)	201, 285
ApaI	GGGCCC	1 cut(s)	289
ApaLI	GTGCAC	1 cut(s)	478
ApeKI	GCWGC	2 cut(s)	393, 396
AspLEI	GCGC	4 cut(s)	72, 147, 339, 353
AspS9I	GGNCC	2 cut(s)	285, 286
AsuHPI	GGTGA	1 cut(s)	284
BaeGI	GKGCMC	2 cut(s)	289, 482
BanI	GGYRCC	2 cut(s)	69, 369
BanII	GRGCYC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	2 cut(s)	405, 408
BccI	CCATC	1 cut(s)	611
BceAI	ACGGC	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	193
BfoI	RGCGCY	1 cut(s)	73
BfuAI	ACCTGC	2 cut(s)	186, 265
BisI	GCNGC	7 cut(s)	68, 73, 143, 365, 368, 394, 397
BlsI	GCNGC	7 cut(s)	69, 74, 144, 366, 369, 395, 398
BmgT120I	GGNCC	2 cut(s)	285, 286
BmiI	GGNNCC	4 cut(s)	71, 287, 371, 557
BmsI	GCATC	1 cut(s)	585
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
BpmI	CTGGAG	2 cut(s)	145, 359
BsaHI	GRCGYC	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	65, 422
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 168, 578
Bse118I	RCCGGY	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	65, 422
BseGI	GGATG	2 cut(s)	84, 622
BseLI	CCNNNNNNNGG	3 cut(s)	16, 168, 578
BseMII	CTCAG	2 cut(s)	193, 473
BseRI	GAGGAG	5 cut(s)	228, 231, 234, 237, 240
BseSI	GKGCMC	2 cut(s)	289, 482
BseX3I	CGGCCG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	405, 408
BseYI	CCCAGC	1 cut(s)	230
Bsh1236I	CGCG	4 cut(s)	67, 145, 339, 351
Bsh1285I	CGRYCG	2 cut(s)	48, 204
BshFI	GGCC	2 cut(s)	203, 287
BshNI	GGYRCC	2 cut(s)	69, 369
BsiEI	CGRYCG	2 cut(s)	48, 204
BsiHKAI	GWGCWC	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	76, 204
BslI	CCNNNNNNNGG	3 cut(s)	16, 168, 578
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	203, 287
Bso31I	GGTCTC	1 cut(s)	182
Bsp120I	GGGCCC	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	289, 482
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	9 cut(s)	48, 65, 67, 73, 109, 143, 169, 364, 367
BspANI	GGCC	2 cut(s)	203, 287
BspCNI	CTCAG	2 cut(s)	192, 472
BspFNI	CGCG	4 cut(s)	67, 145, 339, 351
BspHI	TCATGA	1 cut(s)	638
BspLI	GGNNCC	4 cut(s)	71, 287, 371, 557
BspMAI	CTGCAG	1 cut(s)	197
BspMI	ACCTGC	2 cut(s)	186, 265
BspT107I	GGYRCC	2 cut(s)	69, 369
BspTNI	GGTCTC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	65, 422
BssMI	GATC	1 cut(s)	154
BssNI	GRCGYC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	422
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	205, 623
BstDEI	CTNAG	2 cut(s)	179, 459
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	84, 622
BstFNI	CGCG	4 cut(s)	67, 145, 339, 351
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	4 cut(s)	72, 147, 339, 353
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	154
BstMCI	CGRYCG	2 cut(s)	48, 204
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 376
BstSFI	CTRYAG	1 cut(s)	193
BstSLI	GKGCMC	2 cut(s)	289, 482
BstUI	CGCG	4 cut(s)	67, 145, 339, 351
BstV1I	GCAGC	2 cut(s)	405, 408
BstZI	CGGCCG	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	203, 287
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	84, 622
BtsIMutI	CAGTG	1 cut(s)	511
BveI	ACCTGC	2 cut(s)	186, 265
Cac8I	GCNNGC	2 cut(s)	205, 623
CciI	TCATGA	1 cut(s)	638
CfoI	GCGC	4 cut(s)	72, 147, 339, 353
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	285, 286
Cfr42I	CCGCGG	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	1 cut(s)	639
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	2 cut(s)	179, 459
DinI	GGCGCC	1 cut(s)	71
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	201
EagI	CGGCCG	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
EclXI	CGGCCG	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	422
Eco24I	GRGCYC	1 cut(s)	289
Eco31I	GGTCTC	1 cut(s)	182
Eco52I	CGGCCG	1 cut(s)	201
EcoO109I	RGGNCCY	2 cut(s)	285, 286
EcoT14I	CCWWGG	1 cut(s)	422
EcoT38I	GRGCYC	1 cut(s)	289
EgeI	GGCGCC	1 cut(s)	71
EheI	GGCGCC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	422
FaeI	CATG	1 cut(s)	642
FaiI	YATR	6 cut(s)	32, 362, 402, 448, 450, 640
FatI	CATG	1 cut(s)	638
Fnu4HI	GCNGC	7 cut(s)	68, 73, 143, 365, 368, 394, 397
FokI	GGATG	2 cut(s)	91, 629
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	7 cut(s)	68, 73, 143, 365, 368, 394, 397
GlaI	GCGC	4 cut(s)	71, 146, 338, 352
GluI	GCNGC	7 cut(s)	68, 73, 143, 365, 368, 394, 397
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	2 cut(s)	145, 359
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	2 cut(s)	203, 287
HapII	CCGG	2 cut(s)	76, 204
HhaI	GCGC	4 cut(s)	72, 147, 339, 353
Hin1I	GRCGYC	1 cut(s)	70
Hin1II	CATG	1 cut(s)	642
Hin6I	GCGC	4 cut(s)	70, 145, 337, 351
HinP1I	GCGC	4 cut(s)	70, 145, 337, 351
HindIII	AAGCTT	2 cut(s)	186, 631
HinfI	GANTC	2 cut(s)	5, 254
HpaII	CCGG	2 cut(s)	76, 204
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188I	TCNGA	6 cut(s)	45, 137, 182, 259, 322, 462
Hpy188III	TCNNGA	5 cut(s)	152, 162, 242, 592, 639
Hpy8I	GTNNAC	1 cut(s)	480
Hpy99I	CGWCG	4 cut(s)	212, 263, 266, 302
HpyAV	CCTTC	4 cut(s)	159, 299, 321, 394
HpyCH4V	TGCA	2 cut(s)	195, 480
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 376
HpyF3I	CTNAG	2 cut(s)	179, 459
Hsp92I	GRCGYC	1 cut(s)	70
Hsp92II	CATG	1 cut(s)	642
HspAI	GCGC	4 cut(s)	70, 145, 337, 351
KasI	GGCGCC	1 cut(s)	69
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
KspI	CCGCGG	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	3 cut(s)	227, 520, 555
Lsp1109I	GCAGC	2 cut(s)	405, 408
LweI	GCATC	1 cut(s)	585
MaeIII	GTNAC	2 cut(s)	345, 581
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	2 cut(s)	260, 507
MfeI	CAATTG	1 cut(s)	530
MhlI	GDGCHC	2 cut(s)	289, 482
MluCI	AATT	1 cut(s)	530
Mly113I	GGCGCC	1 cut(s)	70
MmeI	TCCRAC	3 cut(s)	68, 282, 390
MroNI	GCCGGC	1 cut(s)	203
MseI	TTAA	1 cut(s)	455
MspA1I	CMGCKG	2 cut(s)	67, 475
MspI	CCGG	2 cut(s)	76, 204
MunI	CAATTG	1 cut(s)	530
MvnI	CGCG	4 cut(s)	67, 145, 339, 351
MwoI	GCNNNNNNNGC	2 cut(s)	117, 376
NaeI	GCCGGC	1 cut(s)	205
NarI	GGCGCC	1 cut(s)	70
NdeII	GATC	1 cut(s)	154
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	1 cut(s)	642
NlaIV	GGNNCC	4 cut(s)	71, 287, 371, 557
NmuCI	GTSAC	1 cut(s)	345
PagI	TCATGA	1 cut(s)	638
PaqCI	CACCTGC	1 cut(s)	265
PdiI	GCCGGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	5, 254
PkrI	GCNGC	7 cut(s)	69, 74, 144, 366, 369, 395, 398
PluTI	GGCGCC	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	230
PspN4I	GGNNCC	4 cut(s)	71, 287, 371, 557
PspOMI	GGGCCC	1 cut(s)	285
PspPI	GGNCC	2 cut(s)	285, 286
PstI	CTGCAG	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	475
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SacII	CCGCGG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	7 cut(s)	68, 73, 143, 365, 368, 394, 397
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	2 cut(s)	285, 286
SbfI	CCTGCAGG	1 cut(s)	197
SdaI	CCTGCAGG	1 cut(s)	197
SduI	GDGCHC	2 cut(s)	289, 482
SfaNI	GCATC	1 cut(s)	585
SfcI	CTRYAG	1 cut(s)	193
SfoI	GGCGCC	1 cut(s)	71
Sfr303I	CCGCGG	1 cut(s)	68
SgrBI	CCGCGG	1 cut(s)	68
Sse8387I	CCTGCAGG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	530
SsiI	CCGC	9 cut(s)	48, 65, 67, 73, 109, 143, 169, 364, 367
SspDI	GGCGCC	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	422
TaqI	TCGA	2 cut(s)	297, 387
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	1 cut(s)	530
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	5 cut(s)	70, 75, 145, 367, 370
TfiI	GAWTC	2 cut(s)	5, 254
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	345
TseI	GCWGC	2 cut(s)	393, 396
Tsp45I	GTSAC	1 cut(s)	345
TspDTI	ATGAA	1 cut(s)	500
TspGWI	ACGGA	3 cut(s)	50, 81, 225
TspRI	CASTG	1 cut(s)	511
VneI	GTGCAC	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.