RchiOBHm_Chr4g0439161

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004473
Physical Location & Seq
Forward (+)
61604119 .. 61606296
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40723

Sequence Viewer

Length: 846 bp
ATGGATTCCCTCTCATCGGTTTCGCCCTCCATAATCCTCCCTCCGACCGCCAACCCTCTCCGTCCGCGGCGCCGCCGCATGAGTATCTCTCCGGTCAGCCTACGCAACCGCAACCTCTGCCTGTACTCTGTTTTCCGAGTGCCGCGCTCTCCCGATCTCTCCAGAAGGCGGTTCGGTCTCAGAGAAGCTTCCTGCAGGTCGGCCTGCGGCGGCGGAGGAGCTGGGGCAAATCAGGAGGAAGAGGATTCCGACGACGAAAGTGAGCAGGTGGAGAGGGCCCTTCACCTCGACGGCAGTATTCCTTCTACTTCGGATGAGTTTGTGAAGCGCGTGTCGTCACGCGCTTACGATATGCGGCGGCACCTCCAGCAGACCTTCGATAGCAGCAGCTATGATGTGTTGGAGGCTAATCCTTGGAGAGAAACTTCCAAGCCTGTATATGTATTAACTCAGAGGGAGAACCAGCTGTGCACAATGAAAACACGAAGAAATGTCAGTGAAGTTGAAAGGGAGCTTGGGCAATTGTTTTCCAAAGGAGGAAAGTGGAACCAAGCTAAACAGCCCAGAAATGGTAACAAGTTCCAGATGCTTGTTGAGGATATTAGGGATGGAGTGCTTGTTTTCGAGGATGCAAATGAAGCAGTGAAGTACTGTGATTTGTTGCAAGGAGGCGGCCAAGGTTGTGAAGGTGTTGCAGAAATAGAGGCCTCATCAGTATTTGCTCTGTGCCAGAAAATGAGAGGTCTAGCGGTTCTGTTTCGTCGCGGAAGAAAGCCTCCGTTGCCTCAGAGCTTGGAGCTCAACCTTAGGGCCAGGAAGCGCTCCCTTGAAGACCAACAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3110

Protein Analysis

281

Amino Acids

31.71

Weight (kDa)

9.0

Isoelectric Point (pI)

83.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 256
Acc36I ACCTGC 2 cut(s) 186, 256
AccB1I GGYRCC 2 cut(s) 69, 360
AccII CGCG 5 cut(s) 67, 145, 330, 342, 765
AcoI YGGCCR 1 cut(s) 673
AcyI GRCGYC 1 cut(s) 70
AfaI GTAC 2 cut(s) 125, 650
AfeI AGCGCT 1 cut(s) 821
AfiI CCNNNNNNNGG 3 cut(s) 16, 168, 569
AgsI TTSAA 2 cut(s) 506, 830
AjnI CCWGG 1 cut(s) 812
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AluBI AGCT 8 cut(s) 188, 221, 390, 466, 514, 554, 792, 799
AluI AGCT 8 cut(s) 188, 221, 390, 466, 514, 554, 792, 799
Alw21I GWGCWC 2 cut(s) 473, 801
Alw26I GTCTC 1 cut(s) 182
Alw44I GTGCAC 1 cut(s) 469
Aor51HI AGCGCT 1 cut(s) 821
AoxI GGCC 5 cut(s) 201, 276, 673, 705, 810
ApaI GGGCCC 1 cut(s) 280
ApaLI GTGCAC 1 cut(s) 469
ApeKI GCWGC 2 cut(s) 384, 387
AspLEI GCGC 5 cut(s) 72, 147, 330, 344, 822
AspS9I GGNCC 3 cut(s) 276, 277, 810
AsuHPI GGTGA 1 cut(s) 275
AxyI CCTNAGG 1 cut(s) 806
BaeGI GKGCMC 2 cut(s) 280, 473
BanI GGYRCC 2 cut(s) 69, 360
BanII GRGCYC 2 cut(s) 280, 801
BbsI GAAGAC 1 cut(s) 837
Bbv12I GWGCWC 2 cut(s) 473, 801
BbvI GCAGC 2 cut(s) 396, 399
BccI CCATC 1 cut(s) 602
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 814
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 1 cut(s) 746
BfmI CTRYAG 1 cut(s) 193
BfoI RGCGCY 2 cut(s) 73, 823
BfuAI ACCTGC 2 cut(s) 186, 256
BmcAI AGTACT 1 cut(s) 650
Bme1390I CCNGG 1 cut(s) 814
BmgT120I GGNCC 3 cut(s) 276, 277, 810
BmiI GGNNCC 4 cut(s) 71, 278, 362, 548
BmrFI CCNGG 1 cut(s) 814
BmsI GCATC 2 cut(s) 576, 619
BpiI GAAGAC 1 cut(s) 837
BplI GAGNNNNNCTC 2 cut(s) 73, 105
BpmI CTGGAG 2 cut(s) 145, 350
BsaHI GRCGYC 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 3 cut(s) 65, 413, 676
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 603, 633
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 168, 569
Bse21I CCTNAGG 1 cut(s) 806
BseBI CCWGG 1 cut(s) 814
BseDI CCNNGG 3 cut(s) 65, 413, 676
BseGI GGATG 3 cut(s) 319, 613, 634
BseLI CCNNNNNNNGG 3 cut(s) 16, 168, 569
BseMII CTCAG 3 cut(s) 193, 464, 800
BseRI GAGGAG 1 cut(s) 231
BseSI GKGCMC 2 cut(s) 280, 473
BseXI GCAGC 2 cut(s) 396, 399
BseYI CCCAGC 1 cut(s) 221
Bsh1236I CGCG 5 cut(s) 67, 145, 330, 342, 765
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 5 cut(s) 203, 278, 675, 707, 812
BshNI GGYRCC 2 cut(s) 69, 360
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 2 cut(s) 473, 801
BsiSI CCGG 1 cut(s) 92
BslI CCNNNNNNNGG 3 cut(s) 16, 168, 569
BsmAI GTCTC 1 cut(s) 182
BsnI GGCC 5 cut(s) 203, 278, 675, 707, 812
Bso31I GGTCTC 1 cut(s) 182
Bsp120I GGGCCC 1 cut(s) 276
Bsp1286I GDGCHC 3 cut(s) 280, 473, 801
Bsp143I GATC 1 cut(s) 154
BspANI GGCC 5 cut(s) 203, 278, 675, 707, 812
BspCNI CTCAG 3 cut(s) 192, 463, 799
BspFNI CGCG 5 cut(s) 67, 145, 330, 342, 765
BspLI GGNNCC 4 cut(s) 71, 278, 362, 548
BspMAI CTGCAG 1 cut(s) 197
BspMI ACCTGC 2 cut(s) 186, 256
BspT107I GGYRCC 2 cut(s) 69, 360
BspTNI GGTCTC 1 cut(s) 182
BssECI CCNNGG 3 cut(s) 65, 413, 676
BssMI GATC 1 cut(s) 154
BssNI GRCGYC 1 cut(s) 70
BssT1I CCWWGG 2 cut(s) 413, 676
Bst2UI CCWGG 1 cut(s) 814
Bst4CI ACNGT 1 cut(s) 653
Bst6I CTCTTC 1 cut(s) 234
BstACI GRCGYC 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 4 cut(s) 179, 450, 786, 806
BstDSI CCRYGG 1 cut(s) 65
BstF5I GGATG 3 cut(s) 319, 613, 634
BstFNI CGCG 5 cut(s) 67, 145, 330, 342, 765
BstH2I RGCGCY 2 cut(s) 73, 823
BstHHI GCGC 5 cut(s) 72, 147, 330, 344, 822
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 1 cut(s) 154
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 4 cut(s) 117, 367, 638, 781
BstNI CCWGG 1 cut(s) 814
BstSCI CCNGG 1 cut(s) 812
BstSFI CTRYAG 1 cut(s) 193
BstSLI GKGCMC 2 cut(s) 280, 473
BstUI CGCG 5 cut(s) 67, 145, 330, 342, 765
BstV1I GCAGC 2 cut(s) 396, 399
BstV2I GAAGAC 1 cut(s) 837
Bsu36I CCTNAGG 1 cut(s) 806
BsuRI GGCC 5 cut(s) 203, 278, 675, 707, 812
BtgI CCRYGG 1 cut(s) 65
BtsCI GGATG 3 cut(s) 319, 613, 634
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 2 cut(s) 502, 648
BveI ACCTGC 2 cut(s) 186, 256
Cac8I GCNNGC 1 cut(s) 205
CfoI GCGC 5 cut(s) 72, 147, 330, 344, 822
Cfr13I GGNCC 3 cut(s) 276, 277, 810
Cfr42I CCGCGG 1 cut(s) 68
Csp6I GTAC 2 cut(s) 124, 649
CviAII CATG 1 cut(s) 79
CviQI GTAC 2 cut(s) 124, 649
DdeI CTNAG 4 cut(s) 179, 450, 786, 806
DinI GGCGCC 1 cut(s) 71
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 673
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
EciI GGCGGA 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 799
Eco130I CCWWGG 2 cut(s) 413, 676
Eco147I AGGCCT 1 cut(s) 707
Eco24I GRGCYC 2 cut(s) 280, 801
Eco31I GGTCTC 1 cut(s) 182
Eco47III AGCGCT 1 cut(s) 821
Eco53kI GAGCTC 1 cut(s) 799
Eco81I CCTNAGG 1 cut(s) 806
EcoICRI GAGCTC 1 cut(s) 799
EcoO109I RGGNCCY 2 cut(s) 276, 277
EcoRII CCWGG 1 cut(s) 812
EcoT14I CCWWGG 2 cut(s) 413, 676
EcoT38I GRGCYC 2 cut(s) 280, 801
EgeI GGCGCC 1 cut(s) 71
EheI GGCGCC 1 cut(s) 71
ErhI CCWWGG 2 cut(s) 413, 676
FaeI CATG 1 cut(s) 82
FaiI YATR 6 cut(s) 32, 80, 353, 393, 439, 441
FatI CATG 1 cut(s) 78
FokI GGATG 3 cut(s) 326, 620, 641
FriOI GRGCYC 2 cut(s) 280, 801
FspBI CTAG 1 cut(s) 746
GlaI GCGC 5 cut(s) 71, 146, 329, 343, 821
GsaI CCCAGC 1 cut(s) 225
GsuI CTGGAG 2 cut(s) 145, 350
HaeII RGCGCY 2 cut(s) 73, 823
HaeIII GGCC 5 cut(s) 203, 278, 675, 707, 812
HapII CCGG 1 cut(s) 92
HhaI GCGC 5 cut(s) 72, 147, 330, 344, 822
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 5 cut(s) 70, 145, 328, 342, 820
HinP1I GCGC 5 cut(s) 70, 145, 328, 342, 820
HindIII AAGCTT 1 cut(s) 186
HinfI GANTC 2 cut(s) 5, 245
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 7 cut(s) 45, 137, 182, 250, 313, 453, 789
Hpy188III TCNNGA 4 cut(s) 152, 162, 233, 583
Hpy8I GTNNAC 1 cut(s) 471
Hpy99I CGWCG 4 cut(s) 254, 257, 293, 765
HpyAV CCTTC 5 cut(s) 159, 290, 312, 385, 680
HpyCH4III ACNGT 1 cut(s) 653
HpyCH4V TGCA 5 cut(s) 195, 471, 632, 664, 695
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 367, 638, 781
HpyF3I CTNAG 4 cut(s) 179, 450, 786, 806
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 5 cut(s) 70, 145, 328, 342, 820
KasI GGCGCC 1 cut(s) 69
KspI CCGCGG 1 cut(s) 68
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 4 cut(s) 218, 511, 796, 827
Lsp1109I GCAGC 2 cut(s) 396, 399
LweI GCATC 2 cut(s) 576, 619
MaeI CTAG 1 cut(s) 746
MaeIII GTNAC 2 cut(s) 336, 572
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 4 cut(s) 251, 498, 780, 842
MfeI CAATTG 1 cut(s) 521
MhlI GDGCHC 3 cut(s) 280, 473, 801
MluCI AATT 1 cut(s) 521
Mly113I GGCGCC 1 cut(s) 70
MmeI TCCRAC 3 cut(s) 68, 273, 381
MseI TTAA 1 cut(s) 446
MspA1I CMGCKG 2 cut(s) 67, 466
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 814
MunI CAATTG 1 cut(s) 521
MvaI CCWGG 1 cut(s) 814
MvnI CGCG 5 cut(s) 67, 145, 330, 342, 765
MwoI GCNNNNNNNGC 4 cut(s) 117, 367, 638, 781
NarI GGCGCC 1 cut(s) 70
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 4 cut(s) 71, 278, 362, 548
NmuCI GTSAC 1 cut(s) 336
PaqCI CACCTGC 1 cut(s) 256
PceI AGGCCT 1 cut(s) 707
PfeI GAWTC 2 cut(s) 5, 245
PluTI GGCGCC 1 cut(s) 73
Psp124BI GAGCTC 1 cut(s) 801
Psp6I CCWGG 1 cut(s) 812
PspFI CCCAGC 1 cut(s) 221
PspGI CCWGG 1 cut(s) 812
PspN4I GGNNCC 4 cut(s) 71, 278, 362, 548
PspOMI GGGCCC 1 cut(s) 276
PspPI GGNCC 3 cut(s) 276, 277, 810
PstI CTGCAG 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 466
RsaI GTAC 2 cut(s) 125, 650
RsaNI GTAC 2 cut(s) 124, 649
SacI GAGCTC 1 cut(s) 801
SacII CCGCGG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 446
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 3 cut(s) 276, 277, 810
SbfI CCTGCAGG 1 cut(s) 197
ScaI AGTACT 1 cut(s) 650
ScrFI CCNGG 1 cut(s) 814
SdaI CCTGCAGG 1 cut(s) 197
SduI GDGCHC 3 cut(s) 280, 473, 801
SfaNI GCATC 2 cut(s) 576, 619
SfcI CTRYAG 1 cut(s) 193
SfoI GGCGCC 1 cut(s) 71
Sfr303I CCGCGG 1 cut(s) 68
SgrBI CCGCGG 1 cut(s) 68
Sse8387I CCTGCAGG 1 cut(s) 197
Sse9I AATT 1 cut(s) 521
SseBI AGGCCT 1 cut(s) 707
SspDI GGCGCC 1 cut(s) 69
SspMI CTAG 1 cut(s) 746
SstI GAGCTC 1 cut(s) 801
StuI AGGCCT 1 cut(s) 707
StyD4I CCNGG 1 cut(s) 812
StyI CCWWGG 2 cut(s) 413, 676
TaaI ACNGT 1 cut(s) 653
TaqI TCGA 3 cut(s) 288, 378, 624
TaqII GACCGA 1 cut(s) 164
TasI AATT 1 cut(s) 521
TatI WGTACW 2 cut(s) 123, 648
TauI GCSGC 9 cut(s) 70, 75, 78, 145, 210, 213, 358, 361, 675
TfiI GAWTC 2 cut(s) 5, 245
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TscAI CASTG 2 cut(s) 502, 648
TseFI GTSAC 1 cut(s) 336
TseI GCWGC 2 cut(s) 384, 387
Tsp45I GTSAC 1 cut(s) 336
TspDTI ATGAA 2 cut(s) 491, 651
TspGWI ACGGA 2 cut(s) 50, 768
TspRI CASTG 2 cut(s) 502, 648
VneI GTGCAC 1 cut(s) 469
XspI CTAG 1 cut(s) 746
ZrmI AGTACT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.