Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003883

Physical Location & Seq

Genomic Coordinates Reverse (-)

30761853 .. 30765036

Gene Structure 3184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31760.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGCACAGCCACAAGAAGCTAAGGAAAGGTCTAATATTTCAAGCTATGATTCCTACTTCAAGACAGTGCAGTCCAGGAAGAAATTACCACATTCGCTACAAGAGGTTTTGACAACTGCATTTGCAAAAATCCCAGTTTCATCTTTTCCAGGAGTTCCTGGAGGCAAAGTAGTTGAGATTCCAGCAAATACATCTATCGGTGACGCAGTTAGGATTTTGTCTGAATGCAACATTTTGTCGGCCCCTGTGACGAACCCAGATGCAAAAACCAGCTCCGAGTGGACAGATAGGTACCTCGGAATCATAGATTACTCTGCCATTGTTCTTTGGGTGTTGGAGAGTGCAGAACTAGCTGCAGTTGCTCTCTCAGCGAGTTCAGCAACAGCTGCTGGAGTTGGTGCAGGAGCTGTTGGTGCAATTGGAGCCGCAGCATTGGGTGTGACTGGTCCTGTTGCAGTTGCAGGGTTAACCGCTGCTGCAGTTGGAGCTGCAGTGGCAGGCGGAGTGGCTACTGACAAAGGGATGGGCAAAGATGCTCCTACAGCTGCTGATCATTTGGGCCAAGACTTTTACAAAACTATACTGCAAGATGAACCCTTCAAATCAACCACCGTAAGGTCAATACTTAAATCCTTCCGCTGGGCACCTTTCCTTCCCGTAACAAGCGATAGTTCTATGTTGAGCGTCTTGCTGCTACTTTCAAAATATAGACTGAGGAATGTACCTGTGATAGAACCTGGCCAAGGCACTATCAAGAACTACATCACTCAATCAGCAGTTGTTCATGGACTTGAACGATGCAAAGGAAGGGATTGGTTTGACTGCATTGCCTCAAAGCCTATATCTGTTCTGGGACTTCCTTTTATGTCCTCAGATGAGGTTATAAGTGTCCAGAGCGATGACTTGATACTGGAAGCTTTCAAGAAGATGAAAGATAACCAAATTGGTGGTCTTCCAGTTGTACAAGGGACACAGAAGCAGATAGTTGGTAATGTCAGCATAACAGATATCAGACACTTGCTGCTGAAACCCGAACTCTTCTCCAATTTCAGGAAGCTCACTGTCAGGGATTTCACGAGCACCATCTCAACAAGCCAGAATATTGGAAAAGCCGTCCCAGCAATTACCTGCAATCTCGAGTCCACTCTTGGCAATGTGATTGAAACTCTTGCTTCCAAGTCTGTTCATAGAATCTATGTGGCAGGGCAGGCAGGTGAAGTTATTGGTGTCATTACACTCAGAGATGTGATTTCCTGCTTCATCTATGAACCCCCCAATCACTTTGATGATTACATGGGGTCTGCGCTGAAAGAGATGCTGAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

443

Amino Acids

46.99

Weight (kDa)

6.61

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69800 AT1G69800 AT1G69800
fragaria_vesca	FvH4_4g31760 FvH4_4g31760 FvH4_4g31760 FvH4_4g31760 FvH4_4g31780 FvH4_4g31780
malus_domestica	MD13G1077700.v1.1 MD13G1077800.v1.1 MD16G1077600.v1.1
prunus_persica	Prupe.1G269400_v2.0.a1
pyrus_communis	pycom13g06740 pycom16g06700
rosa_chinensis	RchiOBHm_Chr4g0440361 RchiOBHm_Chr4g0440371
rosa_laevigata	RLG00000006187 RLG00000006188
rosa_multiflora	Rmu_sc0001685.1_g000046
rosa_roxburghii	Rroxscaffold_5G00381240 Rroxscaffold_5G00381250
rosa_rugosa	Rorug04G0325800 Rorug04G0325800
rosa_samantha	Rh4AG376900 Rh4AG377000 Rh4BG389900 Rh4BG390000 Rh4CG404700 Rh4CG404800 Rh4DG383600 Rh4DG383700
rosa_wichuraiana	Rw4G032270 Rw4G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	884
AarI	CACCTGC	1 cut(s)	1202
AasI	GACNNNNNNGTC	1 cut(s)	70
Acc36I	ACCTGC	2 cut(s)	1136, 1202
Acc65I	GGTACC	1 cut(s)	291
AccB1I	GGYRCC	2 cut(s)	291, 643
AciI	CCGC	4 cut(s)	426, 471, 501, 637
AcoI	YGGCCR	1 cut(s)	739
AfaI	GTAC	3 cut(s)	293, 723, 963
AfiI	CCNNNNNNNGG	4 cut(s)	615, 639, 743, 1050
AgsI	TTSAA	7 cut(s)	42, 61, 601, 702, 794, 922, 1163
AjnI	CCWGG	4 cut(s)	74, 148, 157, 736
Alw21I	GWGCWC	1 cut(s)	1082
AlwNI	CAGNNNCTG	3 cut(s)	389, 407, 548
Ama87I	CYCGRG	1 cut(s)	1136
AoxI	GGCC	3 cut(s)	240, 559, 739
ApeKI	GCWGC	9 cut(s)	353, 386, 428, 473, 476, 488, 545, 691, 1021
ArsI	GACNNNNNNTTYG	2 cut(s)	934, 966
Asp718I	GGTACC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	1306
AspS9I	GGNCC	3 cut(s)	241, 446, 559
AsuHPI	GGTGA	2 cut(s)	212, 1226
AvaI	CYCGRG	1 cut(s)	1136
AvaII	GGWCC	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	646
BalI	TGGCCA	1 cut(s)	741
BanI	GGYRCC	2 cut(s)	291, 643
BauI	CACGAG	1 cut(s)	1075
BbsI	GAAGAC	1 cut(s)	944
Bbv12I	GWGCWC	1 cut(s)	1082
BbvI	GCAGC	9 cut(s)	340, 373, 440, 460, 463, 475, 532, 678, 1008
BccI	CCATC	2 cut(s)	517, 1091
BceAI	ACGGC	1 cut(s)	1097
BciT130I	CCWGG	4 cut(s)	76, 150, 159, 738
BclI	TGATCA	1 cut(s)	550
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	4 cut(s)	354, 477, 489, 540
BfuAI	ACCTGC	2 cut(s)	1136, 1202
Bme1390I	CCNGG	4 cut(s)	76, 150, 159, 738
Bme18I	GGWCC	1 cut(s)	446
BmeT110I	CYCGRG	1 cut(s)	1136
BmgT120I	GGNCC	3 cut(s)	241, 446, 559
BmiI	GGNNCC	4 cut(s)	243, 293, 424, 645
BmrFI	CCNGG	4 cut(s)	76, 150, 159, 738
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	4 cut(s)	250, 523, 788, 1305
BmuI	ACTGGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	944
BpmI	CTGGAG	2 cut(s)	180, 411
Bpu10I	CCTNAGC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	295, 742
BsaXI	ACNNNNNCTCC	4 cut(s)	153, 183, 477, 507
Bsc4I	CCNNNNNNNGG	4 cut(s)	615, 639, 743, 1050
Bse1I	ACTGG	4 cut(s)	134, 448, 915, 956
Bse3DI	GCAATG	2 cut(s)	825, 1159
BseBI	CCWGG	4 cut(s)	76, 150, 159, 738
BseDI	CCNNGG	2 cut(s)	295, 742
BseGI	GGATG	1 cut(s)	528
BseLI	CCNNNNNNNGG	4 cut(s)	615, 639, 743, 1050
BseMI	GCAATG	2 cut(s)	825, 1159
BseMII	CTCAG	4 cut(s)	381, 704, 885, 1252
BseNI	ACTGG	4 cut(s)	134, 448, 915, 956
BseSI	GKGCMC	1 cut(s)	646
BseXI	GCAGC	9 cut(s)	340, 373, 440, 460, 463, 475, 532, 678, 1008
BseYI	CCCAGC	2 cut(s)	639, 1117
BsgI	GTGCAG	3 cut(s)	89, 363, 420
BshFI	GGCC	3 cut(s)	242, 561, 741
BshNI	GGYRCC	2 cut(s)	291, 643
BsiHKAI	GWGCWC	1 cut(s)	1082
BsiHKCI	CYCGRG	1 cut(s)	1136
BslFI	GGGAC	3 cut(s)	867, 982, 1100
BslI	CCNNNNNNNGG	4 cut(s)	615, 639, 743, 1050
BsmFI	GGGAC	3 cut(s)	867, 982, 1100
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	3 cut(s)	242, 561, 741
BsoBI	CYCGRG	1 cut(s)	1136
Bsp1286I	GDGCHC	2 cut(s)	646, 1082
Bsp1407I	TGTACA	1 cut(s)	961
Bsp143I	GATC	1 cut(s)	550
BspACI	CCGC	4 cut(s)	426, 471, 501, 637
BspANI	GGCC	3 cut(s)	242, 561, 741
BspCNI	CTCAG	4 cut(s)	380, 705, 884, 1251
BspLI	GGNNCC	4 cut(s)	243, 293, 424, 645
BspMAI	CTGCAG	3 cut(s)	358, 481, 493
BspMI	ACCTGC	2 cut(s)	1136, 1202
BspT107I	GGYRCC	2 cut(s)	291, 643
BsrDI	GCAATG	2 cut(s)	825, 1159
BsrGI	TGTACA	1 cut(s)	961
BsrI	ACTGG	4 cut(s)	134, 448, 915, 956
BssECI	CCNNGG	2 cut(s)	295, 742
BssMI	GATC	1 cut(s)	550
BssSI	CACGAG	1 cut(s)	1075
BssT1I	CCWWGG	1 cut(s)	742
Bst2BI	CACGAG	1 cut(s)	1075
Bst2UI	CCWGG	4 cut(s)	76, 150, 159, 738
Bst4CI	ACNGT	3 cut(s)	67, 613, 1063
Bst6I	CTCTTC	1 cut(s)	1043
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstAUI	TGTACA	1 cut(s)	961
BstC8I	GCNNGC	2 cut(s)	499, 1209
BstDEI	CTNAG	5 cut(s)	21, 367, 713, 871, 1238
BstENI	CCTNNNNNAGG	1 cut(s)	741
BstF5I	GGATG	1 cut(s)	528
BstHHI	GCGC	1 cut(s)	1306
BstKTI	GATC	1 cut(s)	553
BstMBI	GATC	1 cut(s)	550
BstNI	CCWGG	4 cut(s)	76, 150, 159, 738
BstSCI	CCNGG	4 cut(s)	74, 148, 157, 736
BstSFI	CTRYAG	4 cut(s)	354, 477, 489, 540
BstSLI	GKGCMC	1 cut(s)	646
BstV1I	GCAGC	9 cut(s)	340, 373, 440, 460, 463, 475, 532, 678, 1008
BstV2I	GAAGAC	1 cut(s)	944
BstXI	CCANNNNNNTGG	2 cut(s)	947, 1103
BsuRI	GGCC	3 cut(s)	242, 561, 741
BtgZI	GCGATG	1 cut(s)	912
BtsCI	GGATG	1 cut(s)	528
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	3 cut(s)	72, 498, 1059
BveI	ACCTGC	2 cut(s)	1136, 1202
Cac8I	GCNNGC	2 cut(s)	499, 1209
CaiI	CAGNNNCTG	3 cut(s)	389, 407, 548
CfoI	GCGC	1 cut(s)	1306
Cfr13I	GGNCC	3 cut(s)	241, 446, 559
CseI	GACGC	2 cut(s)	212, 673
Csp6I	GTAC	3 cut(s)	292, 722, 962
CviAII	CATG	2 cut(s)	785, 1294
CviQI	GTAC	3 cut(s)	292, 722, 962
DdeI	CTNAG	5 cut(s)	21, 367, 713, 871, 1238
DpnI	GATC	1 cut(s)	552
DpnII	GATC	1 cut(s)	550
DrdI	GACNNNNNNGTC	1 cut(s)	70
DseDI	GACNNNNNNGTC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	739
Eam1104I	CTCTTC	1 cut(s)	1043
EarI	CTCTTC	1 cut(s)	1043
EciI	GGCGGA	1 cut(s)	516
Eco130I	CCWWGG	1 cut(s)	742
Eco32I	GATATC	1 cut(s)	1009
Eco47I	GGWCC	1 cut(s)	446
Eco88I	CYCGRG	1 cut(s)	1136
EcoNI	CCTNNNNNAGG	1 cut(s)	741
EcoRII	CCWGG	4 cut(s)	74, 148, 157, 736
EcoRV	GATATC	1 cut(s)	1009
EcoT14I	CCWWGG	1 cut(s)	742
ErhI	CCWWGG	1 cut(s)	742
FaeI	CATG	2 cut(s)	788, 1297
FaqI	GGGAC	3 cut(s)	867, 982, 1100
FatI	CATG	2 cut(s)	784, 1293
FbaI	TGATCA	1 cut(s)	550
FokI	GGATG	1 cut(s)	535
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	1305
GsaI	CCCAGC	2 cut(s)	643, 1121
GsuI	CTGGAG	2 cut(s)	180, 411
HaeIII	GGCC	3 cut(s)	242, 561, 741
HgaI	GACGC	2 cut(s)	212, 673
HhaI	GCGC	1 cut(s)	1306
Hin1II	CATG	2 cut(s)	788, 1297
Hin6I	GCGC	1 cut(s)	1304
HinP1I	GCGC	1 cut(s)	1304
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HindIII	AAGCTT	1 cut(s)	915
HinfI	GANTC	6 cut(s)	50, 178, 300, 1139, 1191, 1321
HpaI	GTTAAC	1 cut(s)	468
HphI	GGTGA	2 cut(s)	212, 1226
Hpy166II	GTNNAC	3 cut(s)	282, 468, 1143
Hpy188I	TCNGA	6 cut(s)	223, 277, 299, 874, 1013, 1241
Hpy188III	TCNNGA	7 cut(s)	61, 754, 892, 922, 1051, 1075, 1136
Hpy8I	GTNNAC	3 cut(s)	282, 468, 1143
HpyAV	CCTTC	4 cut(s)	607, 643, 662, 801
HpyCH4III	ACNGT	3 cut(s)	67, 613, 1063
HpyF3I	CTNAG	5 cut(s)	21, 367, 713, 871, 1238
Hsp92II	CATG	2 cut(s)	788, 1297
HspAI	GCGC	1 cut(s)	1304
KpnI	GGTACC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	550
KspAI	GTTAAC	1 cut(s)	468
Kzo9I	GATC	1 cut(s)	550
LmnI	GCTCC	5 cut(s)	278, 404, 422, 485, 541
Lsp1109I	GCAGC	9 cut(s)	340, 373, 440, 460, 463, 475, 532, 678, 1008
LweI	GCATC	4 cut(s)	250, 523, 788, 1305
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	4 cut(s)	200, 247, 439, 658
MalI	GATC	1 cut(s)	552
MboI	GATC	1 cut(s)	550
MboII	GAAGA	4 cut(s)	91, 937, 944, 1030
MfeI	CAATTG	1 cut(s)	417
MhlI	GDGCHC	2 cut(s)	646, 1082
MlsI	TGGCCA	1 cut(s)	741
MluCI	AATT	5 cut(s)	83, 417, 942, 1045, 1122
MluNI	TGGCCA	1 cut(s)	741
MlyI	GAGTC	1 cut(s)	1148
MmeI	TCCRAC	2 cut(s)	315, 463
MnlI	CCTC	7 cut(s)	97, 155, 305, 708, 841, 871, 880
Mox20I	TGGCCA	1 cut(s)	741
MscI	TGGCCA	1 cut(s)	741
MseI	TTAA	2 cut(s)	467, 627
MslI	CAYNNNNRTG	1 cut(s)	1284
Msp20I	TGGCCA	1 cut(s)	741
MspA1I	CMGCKG	4 cut(s)	386, 473, 545, 639
MspR9I	CCNGG	4 cut(s)	76, 150, 159, 738
MunI	CAATTG	1 cut(s)	417
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	4 cut(s)	76, 150, 159, 738
NdeII	GATC	1 cut(s)	550
NlaIII	CATG	2 cut(s)	788, 1297
NlaIV	GGNNCC	4 cut(s)	243, 293, 424, 645
NmuCI	GTSAC	3 cut(s)	200, 247, 439
PaeR7I	CTCGAG	1 cut(s)	1136
PaqCI	CACCTGC	1 cut(s)	1202
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	5 cut(s)	50, 178, 300, 1191, 1321
PfoI	TCCNGGA	3 cut(s)	74, 148, 157
PleI	GAGTC	1 cut(s)	1147
PpsI	GAGTC	1 cut(s)	1147
PsiI	TTATAA	1 cut(s)	884
Psp6I	CCWGG	4 cut(s)	74, 148, 157, 736
PspFI	CCCAGC	2 cut(s)	639, 1117
PspGI	CCWGG	4 cut(s)	74, 148, 157, 736
PspN4I	GGNNCC	4 cut(s)	243, 293, 424, 645
PspPI	GGNCC	3 cut(s)	241, 446, 559
PstI	CTGCAG	3 cut(s)	358, 481, 493
PstNI	CAGNNNCTG	3 cut(s)	389, 407, 548
PvuII	CAGCTG	2 cut(s)	386, 545
RsaI	GTAC	3 cut(s)	293, 723, 963
RsaNI	GTAC	3 cut(s)	292, 722, 962
RseI	CAYNNNNRTG	1 cut(s)	1284
SaqAI	TTAA	2 cut(s)	467, 627
Sau3AI	GATC	1 cut(s)	550
Sau96I	GGNCC	3 cut(s)	241, 446, 559
SchI	GAGTC	1 cut(s)	1148
ScrFI	CCNGG	4 cut(s)	76, 150, 159, 738
SduI	GDGCHC	2 cut(s)	646, 1082
SfaNI	GCATC	4 cut(s)	250, 523, 788, 1305
SfcI	CTRYAG	4 cut(s)	354, 477, 489, 540
Sfr274I	CTCGAG	1 cut(s)	1136
SinI	GGWCC	1 cut(s)	446
SlaI	CTCGAG	1 cut(s)	1136
SmiMI	CAYNNNNRTG	1 cut(s)	1284
SmlI	CTYRAG	1 cut(s)	1136
SmoI	CTYRAG	1 cut(s)	1136
Sse9I	AATT	5 cut(s)	83, 417, 942, 1045, 1122
SsiI	CCGC	4 cut(s)	426, 471, 501, 637
SspI	AATATT	2 cut(s)	37, 1102
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	4 cut(s)	74, 148, 157, 736
StyI	CCWWGG	1 cut(s)	742
TaaI	ACNGT	3 cut(s)	67, 613, 1063
TaqI	TCGA	1 cut(s)	1137
TasI	AATT	5 cut(s)	83, 417, 942, 1045, 1122
TatI	WGTACW	1 cut(s)	961
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	5 cut(s)	50, 178, 300, 1191, 1321
Tru1I	TTAA	2 cut(s)	467, 627
Tru9I	TTAA	2 cut(s)	467, 627
TscAI	CASTG	3 cut(s)	72, 498, 1066
TseFI	GTSAC	3 cut(s)	200, 247, 439
TseI	GCWGC	9 cut(s)	353, 386, 428, 473, 476, 488, 545, 691, 1021
Tsp45I	GTSAC	3 cut(s)	200, 247, 439
TspDTI	ATGAA	7 cut(s)	129, 606, 773, 944, 1175, 1249, 1281
TspRI	CASTG	3 cut(s)	72, 498, 1066
VpaK11BI	GGWCC	1 cut(s)	446
XagI	CCTNNNNNAGG	1 cut(s)	741
XhoI	CTCGAG	1 cut(s)	1136
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.