Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003883

Physical Location & Seq

Genomic Coordinates Reverse (-)

62511881 .. 62513437

Gene Structure 1557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40834

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCTAGAAATTGATCATTCTCGCATTCAAATTGTAACAGATATAGCTGCAGAGAATGAGGACAAAGATTCTCCCACAACGGGTGATAAATTGACCAAAGATCTTGACAAGGTCATACTGCAAGATGAACCCTGCAAGTCAACAACAGTAAAGTCAATAGTTAAATCCTTCGGGGAAACACCTTTCCTTCCGGTAGCAGAAGATAGTTCTATGTTGACCATCTTGCTACTACTCTCAAAATATAGGATGAGGAATGTGCCTGTAATAGAAAATGGCCAACCAGGACTGAAGAACTACATTACTCAATCAGCAGTTATACGCGGTCTTGAAGGATGCAAAGGAATGGAGTGGTTTGACTGCATTGCAGAAAAACCTATCTCGGATCTGGGACTTCCCTTTATGTCCTCTGATGAGGTTATTAGTATCCAGAGTGATGATCTGATACTGGAAGCTTATAAGAAAATGAAAGAAAAAAAAATGGGTGGTCTTCCAGTTGTAGAGGGACAAACGAAGAAGCTAGTTGGTAATGTCAGCGTAAGCGATATCAGATACATGTTTCTCAAACACGATCTCCTCTCCAATTTCAGGAAGCTCACTGCTATGGAATTCCTAACCACCATCTCAACAAGCAAAGAACCTGGAAAGCCCATCCCACCAATTACATGCAATATCGAGTCGACTCTTGGTAATGTGATTGAGATTCTTGCTTCCAAGTCCGTTCATAGGATCTACGCGGTAAGTGCGGAAGAAGGAGAAGTTCTTGGTGTGATTACACTCAGAGACGTCATTTCTTGCTTCATATATGAACCCCCCAATCACTTTGATGCCTACTTGGGGTTTGCAGTGAAGGAGATACTGAAGCAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

289

Amino Acids

32.12

Weight (kDa)

5.16

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	136 - 184	1.6e-08	CBS domain
CBS	PF00571	218 - 265	4e-08	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69800 AT1G69800 AT1G69800
fragaria_vesca	FvH4_4g31760 FvH4_4g31760 FvH4_4g31760 FvH4_4g31760 FvH4_4g31780 FvH4_4g31780
malus_domestica	MD13G1077700.v1.1 MD13G1077800.v1.1 MD16G1077600.v1.1
prunus_persica	Prupe.1G269400_v2.0.a1
pyrus_communis	pycom13g06740 pycom16g06700
rosa_chinensis	RchiOBHm_Chr4g0440361 RchiOBHm_Chr4g0440371
rosa_laevigata	RLG00000006187 RLG00000006188
rosa_multiflora	Rmu_sc0001685.1_g000046
rosa_roxburghii	Rroxscaffold_5G00381240 Rroxscaffold_5G00381250
rosa_rugosa	Rorug04G0325800 Rorug04G0325800
rosa_samantha	Rh4AG376900 Rh4AG377000 Rh4BG389900 Rh4BG390000 Rh4CG404700 Rh4CG404800 Rh4DG383600 Rh4DG383700
rosa_wichuraiana	Rw4G032270 Rw4G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
AatII	GACGTC	1 cut(s)	786
AccI	GTMKAC	1 cut(s)	677
AccII	CGCG	2 cut(s)	321, 734
AciI	CCGC	3 cut(s)	321, 734, 743
AclWI	GGATC	2 cut(s)	390, 734
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	605
AcuI	CTGAAG	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	783
AfiI	CCNNNNNNNGG	4 cut(s)	80, 585, 723, 834
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	2 cut(s)	29, 329
AjnI	CCWGG	2 cut(s)	280, 637
AluBI	AGCT	4 cut(s)	47, 452, 517, 592
AluI	AGCT	4 cut(s)	47, 452, 517, 592
Alw26I	GTCTC	1 cut(s)	774
AlwI	GGATC	2 cut(s)	390, 734
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	605
AsuHPI	GGTGA	1 cut(s)	95
BalI	TGGCCA	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	479
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	3 cut(s)	227, 626, 656
BciT130I	CCWGG	2 cut(s)	282, 639
BciVI	GTATCC	1 cut(s)	434
BclI	TGATCA	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	774
BfaI	CTAG	2 cut(s)	5, 518
BfmI	CTRYAG	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	434
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	2 cut(s)	282, 639
BmrFI	CCNGG	2 cut(s)	282, 639
BmsI	GCATC	2 cut(s)	323, 814
BpiI	GAAGAC	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	783
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 585, 723, 834
Bse1I	ACTGG	2 cut(s)	450, 491
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	2 cut(s)	282, 639
BseGI	GGATG	3 cut(s)	252, 338, 648
BseLI	CCNNNNNNNGG	4 cut(s)	80, 585, 723, 834
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	790
BseNI	ACTGG	2 cut(s)	450, 491
BseRI	GAGGAG	1 cut(s)	563
BseXI	GCAGC	1 cut(s)	34
Bsh1236I	CGCG	2 cut(s)	321, 734
BshFI	GGCC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	2 cut(s)	402, 516
BslI	CCNNNNNNNGG	4 cut(s)	80, 585, 723, 834
BsmAI	GTCTC	1 cut(s)	774
BsmBI	CGTCTC	1 cut(s)	774
BsmFI	GGGAC	2 cut(s)	402, 516
BsmI	GAATGC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	276
Bsp143I	GATC	6 cut(s)	13, 100, 382, 436, 568, 726
BspACI	CCGC	3 cut(s)	321, 734, 743
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	1 cut(s)	789
BspFNI	CGCG	2 cut(s)	321, 734
BspMAI	CTGCAG	1 cut(s)	52
BspPI	GGATC	2 cut(s)	390, 734
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	450, 491
BssMI	GATC	6 cut(s)	13, 100, 382, 436, 568, 726
BssNI	GRCGYC	1 cut(s)	783
Bst2UI	CCWGG	2 cut(s)	282, 639
Bst4CI	ACNGT	1 cut(s)	148
BstACI	GRCGYC	1 cut(s)	783
BstDEI	CTNAG	1 cut(s)	776
BstF5I	GGATG	3 cut(s)	252, 338, 648
BstFNI	CGCG	2 cut(s)	321, 734
BstKTI	GATC	6 cut(s)	16, 103, 385, 439, 571, 729
BstMAI	GTCTC	1 cut(s)	774
BstMBI	GATC	6 cut(s)	13, 100, 382, 436, 568, 726
BstMWI	GCNNNNNNNGC	1 cut(s)	740
BstNI	CCWGG	2 cut(s)	282, 639
BstNSI	RCATGY	2 cut(s)	556, 666
BstSCI	CCNGG	2 cut(s)	280, 637
BstSFI	CTRYAG	1 cut(s)	48
BstUI	CGCG	2 cut(s)	321, 734
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	479
BstX2I	RGATCY	3 cut(s)	100, 382, 726
BstYI	RGATCY	3 cut(s)	100, 382, 726
BsuI	GTATCC	1 cut(s)	434
BsuRI	GGCC	1 cut(s)	276
BtsCI	GGATG	3 cut(s)	252, 338, 648
BtsI	GCAGTG	2 cut(s)	594, 849
BtsIMutI	CAGTG	2 cut(s)	594, 849
CviAII	CATG	2 cut(s)	553, 663
CviJI	RGCY	6 cut(s)	47, 276, 452, 517, 592, 646
CviKI_1	RGCY	6 cut(s)	47, 276, 452, 517, 592, 646
DdeI	CTNAG	1 cut(s)	776
DpnI	GATC	6 cut(s)	15, 102, 384, 438, 570, 728
DpnII	GATC	6 cut(s)	13, 100, 382, 436, 568, 726
EaeI	YGGCCR	1 cut(s)	274
Eco32I	GATATC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	605
EcoRII	CCWGG	2 cut(s)	280, 637
EcoRV	GATATC	1 cut(s)	544
Esp3I	CGTCTC	1 cut(s)	774
FaeI	CATG	2 cut(s)	556, 666
FaqI	GGGAC	2 cut(s)	402, 516
FatI	CATG	2 cut(s)	552, 662
FbaI	TGATCA	1 cut(s)	13
FblI	GTMKAC	1 cut(s)	677
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	3 cut(s)	259, 345, 635
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	2 cut(s)	5, 518
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	783
Hin1II	CATG	2 cut(s)	556, 666
HincII	GTYRAC	3 cut(s)	141, 216, 678
HindII	GTYRAC	3 cut(s)	141, 216, 678
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	4 cut(s)	68, 674, 679, 700
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	3 cut(s)	141, 216, 678
Hpy188I	TCNGA	5 cut(s)	382, 409, 441, 548, 779
Hpy188III	TCNNGA	4 cut(s)	104, 326, 427, 586
Hpy8I	GTNNAC	3 cut(s)	141, 216, 678
HpyAV	CCTTC	5 cut(s)	178, 197, 323, 743, 841
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	783
HpyCH4V	TGCA	8 cut(s)	50, 121, 135, 336, 360, 365, 666, 842
HpyF10VI	GCNNNNNNNGC	1 cut(s)	740
HpyF3I	CTNAG	1 cut(s)	776
HpySE526I	ACGT	1 cut(s)	783
Hsp92I	GRCGYC	1 cut(s)	783
Hsp92II	CATG	2 cut(s)	556, 666
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	6 cut(s)	13, 100, 382, 436, 568, 726
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	2 cut(s)	323, 814
MaeI	CTAG	2 cut(s)	5, 518
MaeII	ACGT	1 cut(s)	783
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	6 cut(s)	15, 102, 384, 438, 570, 728
MboI	GATC	6 cut(s)	13, 100, 382, 436, 568, 726
MboII	GAAGA	5 cut(s)	212, 301, 479, 523, 758
MflI	RGATCY	3 cut(s)	100, 382, 726
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	6 cut(s)	9, 30, 89, 580, 605, 657
MluNI	TGGCCA	1 cut(s)	276
MlyI	GAGTC	2 cut(s)	673, 683
MnlI	CCTC	6 cut(s)	52, 243, 406, 415, 493, 584
Mox20I	TGGCCA	1 cut(s)	276
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	2 cut(s)	599, 822
Msp20I	TGGCCA	1 cut(s)	276
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	282, 639
Mva1269I	GAATGC	1 cut(s)	24
MvaI	CCWGG	2 cut(s)	282, 639
MvnI	CGCG	2 cut(s)	321, 734
MwoI	GCNNNNNNNGC	1 cut(s)	740
NdeII	GATC	6 cut(s)	13, 100, 382, 436, 568, 726
NlaIII	CATG	2 cut(s)	556, 666
NspI	RCATGY	2 cut(s)	556, 666
PciI	ACATGT	1 cut(s)	552
PctI	GAATGC	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	68, 700
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	2 cut(s)	673, 682
PpsI	GAGTC	2 cut(s)	673, 682
PscI	ACATGT	1 cut(s)	552
PsiI	TTATAA	1 cut(s)	456
Psp6I	CCWGG	2 cut(s)	280, 637
PspGI	CCWGG	2 cut(s)	280, 637
PstI	CTGCAG	1 cut(s)	52
PsuI	RGATCY	3 cut(s)	100, 382, 726
PsyI	GACNNNGTC	1 cut(s)	110
RseI	CAYNNNNRTG	2 cut(s)	599, 822
SalI	GTCGAC	1 cut(s)	676
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	6 cut(s)	13, 100, 382, 436, 568, 726
SchI	GAGTC	2 cut(s)	673, 683
ScrFI	CCNGG	2 cut(s)	282, 639
SfaNI	GCATC	2 cut(s)	323, 814
SfcI	CTRYAG	1 cut(s)	48
SmiMI	CAYNNNNRTG	2 cut(s)	599, 822
Sse9I	AATT	6 cut(s)	9, 30, 89, 580, 605, 657
SsiI	CCGC	3 cut(s)	321, 734, 743
SspMI	CTAG	2 cut(s)	5, 518
StyD4I	CCNGG	2 cut(s)	280, 637
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	2 cut(s)	672, 677
TasI	AATT	6 cut(s)	9, 30, 89, 580, 605, 657
TfiI	GAWTC	2 cut(s)	68, 700
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	2 cut(s)	601, 849
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	5 cut(s)	141, 479, 710, 787, 819
TspGWI	ACGGA	1 cut(s)	706
TspRI	CASTG	2 cut(s)	601, 849
Tth111I	GACNNNGTC	1 cut(s)	110
XapI	RAATTY	1 cut(s)	605
XceI	RCATGY	2 cut(s)	556, 666
XmiI	GTMKAC	1 cut(s)	677
XspI	CTAG	2 cut(s)	5, 518
ZraI	GACGTC	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.