MD13G1077700.v1.1

SNF1-related protein kinase regulatory subunit gamma-1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
5472746 .. 5475178
2433 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1077700.v1.1.491

Sequence Viewer

Length: 1326 bp
ATGGCACAAGAGGTTAAGGAAAGATCTAAACTTTCAAGCTACGATGCCTACTTCGAAACCATCCAATCCAGGAAGAAATTACCTCGTCCCCTACAGGAGGTTTTGACAAATGCATTTGCGAAAATTCCGGTTTCATCTTTCCCAGCAGTACCTGGAGGCAAAGTAATTGAGATTCCGGCAGATACATCCGTTGGCGACGCGGTTAAGATTCTGTCTGAAAACAACATTTTGTCAGCTCCTGTGAGCAACCCAGAAGCAGATACAAGTTCAGATTGGAGAGGCAGGTACCTAGGTCTCATAGATTACTCTGCCATTATTCTTTGGGTGTTGGAGAGTGCAGAGCTGGCGGCGATTGCTATATCAGCTACGTCAGCAACAGCGGCTGGAGTCGGCGCGGGTGCGGTAGGGGCCATTGGGGCTCTAGCATTGGGGGTGACTGGTCCTGCTGCAGTTGTAGGGCTAACTGCTGCTGCTGTTGGAGCTGCCGTGGCTGGCGGTGCGGCTGCAGAGAAAGGAATAGCCAAAGATGCTCCCACAGCTGCTGATGAATTGGGCAAAGACTTTTACAATGTTATACTGAATGATGAACCCTTCAAGTCAACCACAGTGAGGTCAATACTTAAATCCTTCCGCTGGGCGCCATTCATTCCAGTGGCAACAGATAGTTCGATGTTGAGCGTTATGCTACTACTTTCAAAATATAGGCTGAGGAATGTACCTGTAATAGAACCAGGCCAACCCAACATTAAGAACTACATTACTCAATCAGGACTTGTTCAGGGTCTTGAGAGATGCAGAGGAAGAGACTGGTTCGACTGCATAGCAGCAAAGCCTATCTCTGATTTCGGACTTCCTTTCATGTCCTCTGAAGAGGTTATTAGCATCACGAGCAATGATCTAATACTGGAAGCTTTCAAGAGGATGAGAGATAACAAAATCGGTGGTCTTCCCGTTGTAGAGGGGCCCAAGAAAAACATAGTCGGTAATGTCAGCATCAGAGATATCAGATACTTGCTACTCAAACCCGAGCTTTTCTCCAATTTCAGGAAGCTCACTGTTAGGGACTTCATGAGCACCATCGCAACGACCAACGAAATTGGAAAAGTTATCCAACCAATTACATGCAAACTGGGGTCGCCTCTTGGCAATGTGATTGAAAGTCTTGCTTCCAAGTCCGTTCATAGGATCCATGTAGTCGCTGGGGAGGAAGGTGAAGTTGTCGGCGTCATTACACTCAGAGATGTGATCTCTTGCTTCATCTACGAACCACCAGACCACCTCAATAACTACATGGGGTTTGCGGTGAAGGAGATGTTGAATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

442

Amino Acids

47.22

Weight (kDa)

6.39

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 289 - 340 1.9e-09 CBS domain
CBS PF00571 371 - 418 1.5e-07 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 273
Acc65I GGTACC 1 cut(s) 285
AccB1I GGYRCC 2 cut(s) 285, 637
AccII CGCG 2 cut(s) 200, 395
AciI CCGC 9 cut(s) 200, 347, 380, 395, 401, 495, 500, 631, 1301
AclWI GGATC 2 cut(s) 1180, 1193
AcsI RAATTY 1 cut(s) 123
AcuI CTGAAG 1 cut(s) 888
AcyI GRCGYC 2 cut(s) 638, 1224
AfaI GTAC 3 cut(s) 150, 287, 717
AfiI CCNNNNNNNGG 5 cut(s) 97, 609, 633, 1044, 1182
AgsI TTSAA 6 cut(s) 36, 595, 696, 916, 1157, 1318
AjnI CCWGG 3 cut(s) 68, 151, 730
AluBI AGCT 9 cut(s) 39, 236, 343, 365, 482, 539, 911, 1030, 1051
AluI AGCT 9 cut(s) 39, 236, 343, 365, 482, 539, 911, 1030, 1051
Alw21I GWGCWC 1 cut(s) 1076
Alw26I GTCTC 2 cut(s) 299, 798
AlwI GGATC 2 cut(s) 1180, 1193
AlwNI CAGNNNCTG 4 cut(s) 152, 239, 383, 542
Ama87I CYCGRG 1 cut(s) 1025
AoxI GGCC 3 cut(s) 408, 733, 962
ApaI GGGCCC 1 cut(s) 966
ApeKI GCWGC 7 cut(s) 446, 467, 470, 482, 503, 539, 824
ApoI RAATTY 1 cut(s) 123
Asp718I GGTACC 1 cut(s) 285
AspA2I CCTAGG 1 cut(s) 289
AspLEI GCGC 2 cut(s) 395, 640
AspS9I GGNCC 4 cut(s) 408, 440, 962, 963
AsuHPI GGTGA 3 cut(s) 445, 1223, 1315
AsuII TTCGAA 1 cut(s) 54
AvaI CYCGRG 1 cut(s) 1025
AvaII GGWCC 1 cut(s) 440
AvrII CCTAGG 1 cut(s) 289
BaeGI GKGCMC 1 cut(s) 966
BaeI ACNNNNGTAYC 4 cut(s) 174, 207, 277, 310
BamHI GGATCC 1 cut(s) 1185
BanI GGYRCC 2 cut(s) 285, 637
BanII GRGCYC 2 cut(s) 421, 966
BauI CACGAG 1 cut(s) 886
BbsI GAAGAC 1 cut(s) 938
Bbv12I GWGCWC 1 cut(s) 1076
BbvCI CCTCAGC 1 cut(s) 707
BbvI GCAGC 7 cut(s) 433, 454, 457, 469, 490, 526, 836
BccI CCATC 2 cut(s) 68, 1085
BceAI ACGGC 1 cut(s) 470
BciT130I CCWGG 3 cut(s) 70, 153, 732
BcoDI GTCTC 2 cut(s) 299, 798
BfaI CTAG 2 cut(s) 290, 422
BfmI CTRYAG 3 cut(s) 92, 447, 504
BfoI RGCGCY 1 cut(s) 641
BfuAI ACCTGC 1 cut(s) 273
BglI GCCNNNNNGGC 1 cut(s) 416
BglII AGATCT 1 cut(s) 23
BlnI CCTAGG 1 cut(s) 289
Bme1390I CCNGG 3 cut(s) 70, 153, 732
Bme18I GGWCC 1 cut(s) 440
BmeT110I CYCGRG 1 cut(s) 1025
BmgT120I GGNCC 4 cut(s) 408, 440, 962, 963
BmiI GGNNCC 6 cut(s) 287, 409, 639, 963, 964, 1187
BmrFI CCNGG 3 cut(s) 70, 153, 732
BmrI ACTGGG 1 cut(s) 1139
BmsI GCATC 5 cut(s) 34, 517, 782, 891, 1002
BmuI ACTGGG 1 cut(s) 1139
BpiI GAAGAC 1 cut(s) 938
BplI GAGNNNNNCTC 2 cut(s) 1019, 1051
BpmI CTGGAG 2 cut(s) 174, 405
Bpu10I CCTNAGC 1 cut(s) 707
Bpu14I TTCGAA 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 806
BsaHI GRCGYC 2 cut(s) 638, 1224
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 289, 486
BsaWI WCCGGW 1 cut(s) 127
BsaXI ACNNNNNCTCC 4 cut(s) 147, 177, 471, 501
Bsc4I CCNNNNNNNGG 5 cut(s) 97, 609, 633, 1044, 1182
Bse1I ACTGG 5 cut(s) 442, 650, 812, 909, 1134
Bse3DI GCAATG 2 cut(s) 898, 1153
BseBI CCWGG 3 cut(s) 70, 153, 732
BseDI CCNNGG 2 cut(s) 289, 486
BseGI GGATG 3 cut(s) 60, 185, 927
BseLI CCNNNNNNNGG 5 cut(s) 97, 609, 633, 1044, 1182
BseMI GCAATG 2 cut(s) 898, 1153
BseMII CTCAG 2 cut(s) 698, 1249
BseNI ACTGG 5 cut(s) 442, 650, 812, 909, 1134
BseSI GKGCMC 1 cut(s) 966
BseXI GCAGC 7 cut(s) 433, 454, 457, 469, 490, 526, 836
BseYI CCCAGC 3 cut(s) 142, 633, 1199
BsgI GTGCAG 1 cut(s) 357
Bsh1236I CGCG 2 cut(s) 200, 395
BshFI GGCC 3 cut(s) 410, 735, 964
BshNI GGYRCC 2 cut(s) 285, 637
BsiHKAI GWGCWC 1 cut(s) 1076
BsiHKCI CYCGRG 1 cut(s) 1025
BsiSI CCGG 2 cut(s) 128, 176
BslFI GGGAC 2 cut(s) 72, 1076
BslI CCNNNNNNNGG 5 cut(s) 97, 609, 633, 1044, 1182
BsmAI GTCTC 2 cut(s) 299, 798
BsmFI GGGAC 2 cut(s) 72, 1076
BsnI GGCC 3 cut(s) 410, 735, 964
Bso31I GGTCTC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 1025
Bsp119I TTCGAA 1 cut(s) 54
Bsp120I GGGCCC 1 cut(s) 962
Bsp1286I GDGCHC 3 cut(s) 421, 966, 1076
Bsp143I GATC 4 cut(s) 23, 895, 1185, 1245
BspACI CCGC 9 cut(s) 200, 347, 380, 395, 401, 495, 500, 631, 1301
BspANI GGCC 3 cut(s) 410, 735, 964
BspCNI CTCAG 2 cut(s) 699, 1248
BspFNI CGCG 2 cut(s) 200, 395
BspHI TCATGA 1 cut(s) 1068
BspLI GGNNCC 6 cut(s) 287, 409, 639, 963, 964, 1187
BspMAI CTGCAG 2 cut(s) 451, 508
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 2 cut(s) 1180, 1193
BspT104I TTCGAA 1 cut(s) 54
BspT107I GGYRCC 2 cut(s) 285, 637
BspTNI GGTCTC 1 cut(s) 299
BsrDI GCAATG 2 cut(s) 898, 1153
BsrI ACTGG 5 cut(s) 442, 650, 812, 909, 1134
BssECI CCNNGG 2 cut(s) 289, 486
BssMI GATC 4 cut(s) 23, 895, 1185, 1245
BssNI GRCGYC 2 cut(s) 638, 1224
BssSI CACGAG 1 cut(s) 886
BssT1I CCWWGG 1 cut(s) 289
Bst2BI CACGAG 1 cut(s) 886
Bst2UI CCWGG 3 cut(s) 70, 153, 732
Bst4CI ACNGT 2 cut(s) 607, 1057
Bst6I CTCTTC 2 cut(s) 796, 864
BstACI GRCGYC 2 cut(s) 638, 1224
BstBI TTCGAA 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 345, 493
BstDEI CTNAG 2 cut(s) 707, 1235
BstDSI CCRYGG 1 cut(s) 486
BstENI CCTNNNNNAGG 1 cut(s) 95
BstF5I GGATG 3 cut(s) 60, 185, 927
BstFNI CGCG 2 cut(s) 200, 395
BstH2I RGCGCY 1 cut(s) 641
BstHHI GCGC 2 cut(s) 395, 640
BstKTI GATC 4 cut(s) 26, 898, 1188, 1248
BstMAI GTCTC 2 cut(s) 299, 798
BstMBI GATC 4 cut(s) 23, 895, 1185, 1245
BstNI CCWGG 3 cut(s) 70, 153, 732
BstNSI RCATGY 1 cut(s) 1125
BstSCI CCNGG 3 cut(s) 68, 151, 730
BstSFI CTRYAG 3 cut(s) 92, 447, 504
BstSLI GKGCMC 1 cut(s) 966
BstUI CGCG 2 cut(s) 200, 395
BstV1I GCAGC 7 cut(s) 433, 454, 457, 469, 490, 526, 836
BstV2I GAAGAC 1 cut(s) 938
BstX2I RGATCY 2 cut(s) 23, 1185
BstYI RGATCY 2 cut(s) 23, 1185
BsuRI GGCC 3 cut(s) 410, 735, 964
BtgI CCRYGG 1 cut(s) 486
BtgZI GCGATG 1 cut(s) 1063
BtsCI GGATG 3 cut(s) 60, 185, 927
BtsIMutI CAGTG 3 cut(s) 612, 657, 1053
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 2 cut(s) 345, 493
CaiI CAGNNNCTG 4 cut(s) 152, 239, 383, 542
CciI TCATGA 1 cut(s) 1068
CfoI GCGC 2 cut(s) 395, 640
Cfr13I GGNCC 4 cut(s) 408, 440, 962, 963
CseI GACGC 2 cut(s) 206, 1213
Csp6I GTAC 3 cut(s) 149, 286, 716
CspCI CAANNNNNGTGG 2 cut(s) 922, 957
CviAII CATG 5 cut(s) 859, 1069, 1122, 1190, 1291
CviQI GTAC 3 cut(s) 149, 286, 716
DdeI CTNAG 2 cut(s) 707, 1235
DinI GGCGCC 1 cut(s) 639
DpnI GATC 4 cut(s) 25, 897, 1187, 1247
DpnII GATC 4 cut(s) 23, 895, 1185, 1245
Eam1104I CTCTTC 2 cut(s) 796, 864
EarI CTCTTC 2 cut(s) 796, 864
Eco130I CCWWGG 1 cut(s) 289
Eco24I GRGCYC 2 cut(s) 421, 966
Eco31I GGTCTC 1 cut(s) 299
Eco32I GATATC 1 cut(s) 1003
Eco47I GGWCC 1 cut(s) 440
Eco57I CTGAAG 1 cut(s) 888
Eco88I CYCGRG 1 cut(s) 1025
EcoNI CCTNNNNNAGG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 962
EcoRII CCWGG 3 cut(s) 68, 151, 730
EcoRV GATATC 1 cut(s) 1003
EcoT14I CCWWGG 1 cut(s) 289
EcoT22I ATGCAT 1 cut(s) 115
EcoT38I GRGCYC 2 cut(s) 421, 966
EgeI GGCGCC 1 cut(s) 639
EheI GGCGCC 1 cut(s) 639
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 5 cut(s) 862, 1072, 1125, 1193, 1294
FalI AAGNNNNNCTT 2 cut(s) 1150, 1182
FaqI GGGAC 2 cut(s) 72, 1076
FatI CATG 5 cut(s) 858, 1068, 1121, 1189, 1290
FauI CCCGC 1 cut(s) 388
FokI GGATG 3 cut(s) 47, 172, 934
FriOI GRGCYC 2 cut(s) 421, 966
FspBI CTAG 2 cut(s) 290, 422
GlaI GCGC 2 cut(s) 394, 639
GsaI CCCAGC 3 cut(s) 146, 637, 1203
GsuI CTGGAG 2 cut(s) 174, 405
HaeII RGCGCY 1 cut(s) 641
HaeIII GGCC 3 cut(s) 410, 735, 964
HapII CCGG 2 cut(s) 128, 176
HgaI GACGC 2 cut(s) 206, 1213
HhaI GCGC 2 cut(s) 395, 640
Hin1I GRCGYC 2 cut(s) 638, 1224
Hin1II CATG 5 cut(s) 862, 1072, 1125, 1193, 1294
Hin6I GCGC 2 cut(s) 393, 638
HinP1I GCGC 2 cut(s) 393, 638
HincII GTYRAC 1 cut(s) 600
HindII GTYRAC 1 cut(s) 600
HindIII AAGCTT 1 cut(s) 909
HinfI GANTC 4 cut(s) 172, 208, 387, 1318
HpaII CCGG 2 cut(s) 128, 176
HphI GGTGA 3 cut(s) 445, 1223, 1315
Hpy166II GTNNAC 1 cut(s) 600
Hpy188I TCNGA 8 cut(s) 217, 271, 841, 848, 868, 998, 1007, 1238
Hpy188III TCNNGA 6 cut(s) 768, 785, 886, 916, 1045, 1069
Hpy8I GTNNAC 1 cut(s) 600
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 4 cut(s) 601, 637, 1202, 1300
HpyCH4III ACNGT 2 cut(s) 607, 1057
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 7 cut(s) 113, 338, 449, 506, 795, 819, 1125
HpyF3I CTNAG 2 cut(s) 707, 1235
HpySE526I ACGT 1 cut(s) 368
Hsp92I GRCGYC 2 cut(s) 638, 1224
Hsp92II CATG 5 cut(s) 862, 1072, 1125, 1193, 1294
HspAI GCGC 2 cut(s) 393, 638
KasI GGCGCC 1 cut(s) 637
KpnI GGTACC 1 cut(s) 289
Kzo9I GATC 4 cut(s) 23, 895, 1185, 1245
LmnI GCTCC 3 cut(s) 241, 479, 535
Lsp1109I GCAGC 7 cut(s) 433, 454, 457, 469, 490, 526, 836
LweI GCATC 5 cut(s) 34, 517, 782, 891, 1002
MaeI CTAG 2 cut(s) 290, 422
MaeII ACGT 1 cut(s) 368
MaeIII GTNAC 1 cut(s) 433
MalI GATC 4 cut(s) 25, 897, 1187, 1247
MboI GATC 4 cut(s) 23, 895, 1185, 1245
MboII GAAGA 4 cut(s) 85, 813, 881, 938
MflI RGATCY 2 cut(s) 23, 1185
MhlI GDGCHC 3 cut(s) 421, 966, 1076
MluCI AATT 7 cut(s) 77, 123, 165, 548, 1039, 1095, 1116
Mly113I GGCGCC 1 cut(s) 638
MlyI GAGTC 1 cut(s) 396
MmeI TCCRAC 3 cut(s) 309, 457, 1135
Mph1103I ATGCAT 1 cut(s) 115
MseI TTAA 4 cut(s) 15, 204, 621, 747
MslI CAYNNNNRTG 1 cut(s) 650
MspA1I CMGCKG 3 cut(s) 380, 539, 633
MspI CCGG 2 cut(s) 128, 176
MspR9I CCNGG 3 cut(s) 70, 153, 732
MvaI CCWGG 3 cut(s) 70, 153, 732
MvnI CGCG 2 cut(s) 200, 395
NarI GGCGCC 1 cut(s) 638
NdeII GATC 4 cut(s) 23, 895, 1185, 1245
NlaIII CATG 5 cut(s) 862, 1072, 1125, 1193, 1294
NlaIV GGNNCC 6 cut(s) 287, 409, 639, 963, 964, 1187
NmuCI GTSAC 1 cut(s) 433
NsiI ATGCAT 1 cut(s) 115
NspI RCATGY 1 cut(s) 1125
NspV TTCGAA 1 cut(s) 54
PagI TCATGA 1 cut(s) 1068
PfeI GAWTC 3 cut(s) 172, 208, 1318
PfoI TCCNGGA 1 cut(s) 68
PleI GAGTC 1 cut(s) 395
PluTI GGCGCC 1 cut(s) 641
PpsI GAGTC 1 cut(s) 395
Psp6I CCWGG 3 cut(s) 68, 151, 730
PspFI CCCAGC 3 cut(s) 142, 633, 1199
PspGI CCWGG 3 cut(s) 68, 151, 730
PspN4I GGNNCC 6 cut(s) 287, 409, 639, 963, 964, 1187
PspOMI GGGCCC 1 cut(s) 962
PspPI GGNCC 4 cut(s) 408, 440, 962, 963
PstI CTGCAG 2 cut(s) 451, 508
PstNI CAGNNNCTG 4 cut(s) 152, 239, 383, 542
PsuI RGATCY 2 cut(s) 23, 1185
PvuII CAGCTG 1 cut(s) 539
RsaI GTAC 3 cut(s) 150, 287, 717
RsaNI GTAC 3 cut(s) 149, 286, 716
RseI CAYNNNNRTG 1 cut(s) 650
SaqAI TTAA 4 cut(s) 15, 204, 621, 747
Sau3AI GATC 4 cut(s) 23, 895, 1185, 1245
Sau96I GGNCC 4 cut(s) 408, 440, 962, 963
SchI GAGTC 1 cut(s) 396
ScrFI CCNGG 3 cut(s) 70, 153, 732
SduI GDGCHC 3 cut(s) 421, 966, 1076
SfaNI GCATC 5 cut(s) 34, 517, 782, 891, 1002
SfcI CTRYAG 3 cut(s) 92, 447, 504
SfoI GGCGCC 1 cut(s) 639
SfuI TTCGAA 1 cut(s) 54
SinI GGWCC 1 cut(s) 440
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
Sse9I AATT 7 cut(s) 77, 123, 165, 548, 1039, 1095, 1116
SsiI CCGC 9 cut(s) 200, 347, 380, 395, 401, 495, 500, 631, 1301
SspDI GGCGCC 1 cut(s) 637
SspMI CTAG 2 cut(s) 290, 422
StyD4I CCNGG 3 cut(s) 68, 151, 730
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 2 cut(s) 607, 1057
TaiI ACGT 1 cut(s) 371
TaqI TCGA 3 cut(s) 54, 668, 813
TasI AATT 7 cut(s) 77, 123, 165, 548, 1039, 1095, 1116
TauI GCSGC 3 cut(s) 350, 383, 503
TfiI GAWTC 3 cut(s) 172, 208, 1318
Tru1I TTAA 4 cut(s) 15, 204, 621, 747
Tru9I TTAA 4 cut(s) 15, 204, 621, 747
TscAI CASTG 3 cut(s) 612, 657, 1060
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 7 cut(s) 446, 467, 470, 482, 503, 539, 824
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 8 cut(s) 123, 561, 600, 634, 847, 1057, 1169, 1246
TspGWI ACGGA 2 cut(s) 178, 1165
TspRI CASTG 3 cut(s) 612, 657, 1060
VpaK11BI GGWCC 1 cut(s) 440
XagI CCTNNNNNAGG 1 cut(s) 95
XapI RAATTY 1 cut(s) 123
XceI RCATGY 1 cut(s) 1125
XcmI CCANNNNNNNNNTGG 1 cut(s) 1196
XmaJI CCTAGG 1 cut(s) 289
XspI CTAG 2 cut(s) 290, 422
Zsp2I ATGCAT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.