Rh4AG377000

SNF1-related protein kinase regulatory subunit gamma-1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
68386343 .. 68388791
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG377000.1

Sequence Viewer

Length: 1230 bp
ATGACAGAAGCAGCACAAGAAGGAAGGGGAATTCCCAAGAGTCCTAAGAGGTCAAGCTGCTATGATGCCTACTTCGAAAGGATTCAGTTCAGGAAGAAATTACCGCATGAGCTTCAAGAGAAATTAACGTATGCATTTTCAAAAGTTCCAGTTTCATCTTTCCAATCCCTTCAGGGAGGAAAAGTAATTGAGATTGTAGCAGATATGTCTATTCCTGATGCAGTCAAGACTCTCTCAGAGCACAAGATTTTGTCAGCTCCGGTGATTACTGTGCCGGATCAAACCTATTCGGATTGGAGAGGAAGGTACCTTGGAATCATAGATTACTCTGCCGTTCTTGTTTGGGTGTTGGAGAGTGCAGAACATGCTGCTGAAGGTGCCTCGTCAGCTAGTTATGCAGCAACCACGGCTGGTGGAATTGGTGGTGCAGGAGCTGTCGGCGCCATTGGAGCTGTAGCATTGGGGGTCACAGGTCCTGCTGCAATTGCAGGCCTAACTGCTGCTGCAGTAAAGTCAATAGTTAAATCCTTCGGGGAAACACCTTTCCTTCCGGTAGCAGAAGATAGTTCTATGTTGACCATCTTGCTACTACTCTCAAAATATAGGATGAGGAATGTGCCTGTAATAGAAAATGGCCAACCAGGACTGAAGAACTACATTACTCAATCAGCAGTTATACGCGGTCTTGAAGGATGCAAAGGAATGGAGTGGTTTGACTGCATTGCAGAAAAACCTATCTCGGATCTGGGACTTCCCTTTATGTCCTCTGATGAGGTTATTAGTATCCAGAGTGATGATCTGATACTGGAAGCTTATAAGAAAATGAAAGAAAAAAAAATGGGTGGTCTTCCAGTTGTAGAGGGACAAACGAAGAAGCTAGTTGGTAATGTCAGCGTAAGCGATATCAGATACATGTTTCTCAAACACGATCTCCTCTCCAATTTCAGGAAGCTCACTGCTATGGAATTCCTAACCACCATCTCAACAAGCAAAGAACCTGGAAAGCCCATCCCACCAATTACATGCAATATCGAGTCGACTCTTGGTAATGTGATTGAGATTCTTGCTTCCAAGTCCGTTCATAGGATCTACGCGGTAAGTGCGGAAGAAGGAGAAGTTCTTGGTGTGATTACACTCAGAGACGTCATTTCTTGCTTCATATATGAACCCCCCAATCACTTTGATGCCTACTTGGGGTTTGCAGTGAAGGAGATACTGAAGCAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

409

Amino Acids

44.25

Weight (kDa)

5.98

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 256 - 304 2.8e-08 CBS domain
CBS PF00571 338 - 385 6.7e-08 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 816
AatII GACGTC 1 cut(s) 1146
Acc65I GGTACC 1 cut(s) 306
AccB1I GGYRCC 3 cut(s) 306, 377, 440
AccI GTMKAC 1 cut(s) 1037
AccII CGCG 2 cut(s) 681, 1094
AciI CCGC 4 cut(s) 104, 681, 1094, 1103
AclWI GGATC 3 cut(s) 285, 750, 1094
AcoI YGGCCR 1 cut(s) 634
AcsI RAATTY 2 cut(s) 30, 965
AcuI CTGAAG 3 cut(s) 155, 393, 668
AcyI GRCGYC 2 cut(s) 441, 1143
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 3 cut(s) 945, 1083, 1194
AflIII ACRYGT 1 cut(s) 912
AgsI TTSAA 3 cut(s) 116, 141, 689
AjnI CCWGG 2 cut(s) 640, 997
AluBI AGCT 9 cut(s) 57, 112, 257, 389, 434, 452, 812, 877, 952
AluI AGCT 9 cut(s) 57, 112, 257, 389, 434, 452, 812, 877, 952
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 1134
AlwI GGATC 3 cut(s) 285, 750, 1094
AlwNI CAGNNNCTG 2 cut(s) 434, 476
AoxI GGCC 2 cut(s) 490, 634
ApeKI GCWGC 7 cut(s) 11, 57, 368, 398, 479, 500, 503
ApoI RAATTY 2 cut(s) 30, 965
Asp700I GAANNNNTTC 1 cut(s) 81
Asp718I GGTACC 1 cut(s) 306
AspLEI GCGC 1 cut(s) 443
AspS9I GGNCC 1 cut(s) 473
AsuHPI GGTGA 1 cut(s) 274
AsuII TTCGAA 1 cut(s) 75
AvaII GGWCC 1 cut(s) 473
BalI TGGCCA 1 cut(s) 636
BanI GGYRCC 3 cut(s) 306, 377, 440
BbsI GAAGAC 1 cut(s) 839
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 7 cut(s) 23, 44, 355, 410, 466, 487, 490
BccI CCATC 3 cut(s) 587, 986, 1016
BceAI ACGGC 2 cut(s) 317, 423
BciT130I CCWGG 2 cut(s) 642, 999
BciVI GTATCC 1 cut(s) 794
BcoDI GTCTC 1 cut(s) 1134
BfaI CTAG 2 cut(s) 390, 878
BfmI CTRYAG 2 cut(s) 453, 504
BfoI RGCGCY 1 cut(s) 444
BfuI GTATCC 1 cut(s) 794
BisI GCNGC 7 cut(s) 12, 58, 369, 399, 480, 501, 504
BlsI GCNGC 7 cut(s) 13, 59, 370, 400, 481, 502, 505
Bme1390I CCNGG 2 cut(s) 642, 999
Bme18I GGWCC 1 cut(s) 473
BmgT120I GGNCC 1 cut(s) 473
BmiI GGNNCC 3 cut(s) 308, 379, 442
BmrFI CCNGG 2 cut(s) 642, 999
BmsI GCATC 4 cut(s) 55, 208, 683, 1174
BpiI GAAGAC 1 cut(s) 839
Bpu14I TTCGAA 1 cut(s) 75
BsaHI GRCGYC 2 cut(s) 441, 1143
BsaJI CCNNGG 2 cut(s) 310, 405
BsaWI WCCGGW 2 cut(s) 259, 550
BsaXI ACNNNNNCTCC 4 cut(s) 168, 198, 915, 945
Bsc4I CCNNNNNNNGG 3 cut(s) 945, 1083, 1194
Bse1I ACTGG 3 cut(s) 149, 810, 851
Bse3DI GCAATG 1 cut(s) 720
BseBI CCWGG 2 cut(s) 642, 999
BseDI CCNNGG 2 cut(s) 310, 405
BseGI GGATG 3 cut(s) 612, 698, 1008
BseLI CCNNNNNNNGG 3 cut(s) 945, 1083, 1194
BseMI GCAATG 1 cut(s) 720
BseMII CTCAG 2 cut(s) 249, 1150
BseNI ACTGG 3 cut(s) 149, 810, 851
BseRI GAGGAG 1 cut(s) 923
BseXI GCAGC 7 cut(s) 23, 44, 355, 410, 466, 487, 490
BsgI GTGCAG 2 cut(s) 378, 447
Bsh1236I CGCG 2 cut(s) 681, 1094
BshFI GGCC 2 cut(s) 492, 636
BshNI GGYRCC 3 cut(s) 306, 377, 440
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 3 cut(s) 260, 275, 551
BslFI GGGAC 2 cut(s) 762, 876
BslI CCNNNNNNNGG 3 cut(s) 945, 1083, 1194
BsmAI GTCTC 1 cut(s) 1134
BsmBI CGTCTC 1 cut(s) 1134
BsmFI GGGAC 2 cut(s) 762, 876
BsnI GGCC 2 cut(s) 492, 636
Bsp119I TTCGAA 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 5 cut(s) 277, 742, 796, 928, 1086
BspACI CCGC 4 cut(s) 104, 681, 1094, 1103
BspANI GGCC 2 cut(s) 492, 636
BspCNI CTCAG 2 cut(s) 248, 1149
BspFNI CGCG 2 cut(s) 681, 1094
BspLI GGNNCC 3 cut(s) 308, 379, 442
BspMAI CTGCAG 1 cut(s) 508
BspPI GGATC 3 cut(s) 285, 750, 1094
BspT104I TTCGAA 1 cut(s) 75
BspT107I GGYRCC 3 cut(s) 306, 377, 440
BsrDI GCAATG 1 cut(s) 720
BsrI ACTGG 3 cut(s) 149, 810, 851
BssECI CCNNGG 2 cut(s) 310, 405
BssMI GATC 5 cut(s) 277, 742, 796, 928, 1086
BssNI GRCGYC 2 cut(s) 441, 1143
BssT1I CCWWGG 1 cut(s) 310
Bst2UI CCWGG 2 cut(s) 642, 999
Bst4CI ACNGT 1 cut(s) 271
BstACI GRCGYC 2 cut(s) 441, 1143
BstAPI GCANNNNNTGC 1 cut(s) 365
BstBI TTCGAA 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 490
BstDEI CTNAG 3 cut(s) 45, 235, 1136
BstDSI CCRYGG 1 cut(s) 405
BstF5I GGATG 3 cut(s) 612, 698, 1008
BstFNI CGCG 2 cut(s) 681, 1094
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 5 cut(s) 280, 745, 799, 931, 1089
BstMAI GTCTC 1 cut(s) 1134
BstMBI GATC 5 cut(s) 277, 742, 796, 928, 1086
BstMWI GCNNNNNNNGC 9 cut(s) 365, 377, 386, 395, 407, 440, 449, 485, 1100
BstNI CCWGG 2 cut(s) 642, 999
BstNSI RCATGY 3 cut(s) 368, 916, 1026
BstSCI CCNGG 2 cut(s) 640, 997
BstSFI CTRYAG 2 cut(s) 453, 504
BstUI CGCG 2 cut(s) 681, 1094
BstV1I GCAGC 7 cut(s) 23, 44, 355, 410, 466, 487, 490
BstV2I GAAGAC 1 cut(s) 839
BstX2I RGATCY 2 cut(s) 742, 1086
BstYI RGATCY 2 cut(s) 742, 1086
BsuI GTATCC 1 cut(s) 794
BsuRI GGCC 2 cut(s) 492, 636
BtgI CCRYGG 1 cut(s) 405
BtsCI GGATG 3 cut(s) 612, 698, 1008
BtsI GCAGTG 2 cut(s) 954, 1209
BtsIMutI CAGTG 2 cut(s) 954, 1209
Cac8I GCNNGC 1 cut(s) 490
CaiI CAGNNNCTG 2 cut(s) 434, 476
CfoI GCGC 1 cut(s) 443
Cfr13I GGNCC 1 cut(s) 473
Csp6I GTAC 1 cut(s) 307
CviAII CATG 4 cut(s) 107, 365, 913, 1023
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 3 cut(s) 45, 235, 1136
DinI GGCGCC 1 cut(s) 442
DpnI GATC 5 cut(s) 279, 744, 798, 930, 1088
DpnII GATC 5 cut(s) 277, 742, 796, 928, 1086
EaeI YGGCCR 1 cut(s) 634
Eco130I CCWWGG 1 cut(s) 310
Eco147I AGGCCT 1 cut(s) 492
Eco32I GATATC 1 cut(s) 904
Eco47I GGWCC 1 cut(s) 473
Eco57I CTGAAG 3 cut(s) 155, 393, 668
EcoO109I RGGNCCY 1 cut(s) 473
EcoRI GAATTC 2 cut(s) 30, 965
EcoRII CCWGG 2 cut(s) 640, 997
EcoRV GATATC 1 cut(s) 904
EcoT14I CCWWGG 1 cut(s) 310
EcoT22I ATGCAT 1 cut(s) 136
EgeI GGCGCC 1 cut(s) 442
EheI GGCGCC 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 310
Esp3I CGTCTC 1 cut(s) 1134
FaeI CATG 4 cut(s) 110, 368, 916, 1026
FaqI GGGAC 2 cut(s) 762, 876
FatI CATG 4 cut(s) 106, 364, 912, 1022
FblI GTMKAC 1 cut(s) 1037
Fnu4HI GCNGC 7 cut(s) 12, 58, 369, 399, 480, 501, 504
FokI GGATG 3 cut(s) 619, 705, 995
Fsp4HI GCNGC 7 cut(s) 12, 58, 369, 399, 480, 501, 504
FspBI CTAG 2 cut(s) 390, 878
GlaI GCGC 1 cut(s) 442
GluI GCNGC 7 cut(s) 12, 58, 369, 399, 480, 501, 504
HaeII RGCGCY 1 cut(s) 444
HaeIII GGCC 2 cut(s) 492, 636
HapII CCGG 3 cut(s) 260, 275, 551
HhaI GCGC 1 cut(s) 443
Hin1I GRCGYC 2 cut(s) 441, 1143
Hin1II CATG 4 cut(s) 110, 368, 916, 1026
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HincII GTYRAC 2 cut(s) 576, 1038
HindII GTYRAC 2 cut(s) 576, 1038
HindIII AAGCTT 1 cut(s) 810
HinfI GANTC 7 cut(s) 40, 82, 229, 315, 1034, 1039, 1060
HpaII CCGG 3 cut(s) 260, 275, 551
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 576, 1038
Hpy188I TCNGA 7 cut(s) 238, 292, 742, 769, 801, 908, 1139
Hpy188III TCNNGA 7 cut(s) 91, 116, 215, 226, 686, 787, 946
Hpy8I GTNNAC 2 cut(s) 576, 1038
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 2 cut(s) 128, 1143
HpyF10VI GCNNNNNNNGC 9 cut(s) 365, 377, 386, 395, 407, 440, 449, 485, 1100
HpyF3I CTNAG 3 cut(s) 45, 235, 1136
HpySE526I ACGT 2 cut(s) 128, 1143
Hsp92I GRCGYC 2 cut(s) 441, 1143
Hsp92II CATG 4 cut(s) 110, 368, 916, 1026
HspAI GCGC 1 cut(s) 441
KasI GGCGCC 1 cut(s) 440
KpnI GGTACC 1 cut(s) 310
Kzo9I GATC 5 cut(s) 277, 742, 796, 928, 1086
LmnI GCTCC 3 cut(s) 262, 431, 449
Lsp1109I GCAGC 7 cut(s) 23, 44, 355, 410, 466, 487, 490
LweI GCATC 4 cut(s) 55, 208, 683, 1174
MaeI CTAG 2 cut(s) 390, 878
MaeII ACGT 2 cut(s) 128, 1143
MaeIII GTNAC 1 cut(s) 466
MalI GATC 5 cut(s) 279, 744, 798, 930, 1088
MboI GATC 5 cut(s) 277, 742, 796, 928, 1086
MboII GAAGA 6 cut(s) 106, 572, 661, 839, 883, 1118
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 2 cut(s) 742, 1086
MhlI GDGCHC 1 cut(s) 243
MlsI TGGCCA 1 cut(s) 636
MluCI AATT 9 cut(s) 30, 98, 122, 186, 417, 483, 940, 965, 1017
MluNI TGGCCA 1 cut(s) 636
Mly113I GGCGCC 1 cut(s) 441
MlyI GAGTC 4 cut(s) 49, 223, 1033, 1043
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 9 cut(s) 42, 170, 293, 391, 603, 766, 775, 853, 944
Mox20I TGGCCA 1 cut(s) 636
Mph1103I ATGCAT 1 cut(s) 136
MroXI GAANNNNTTC 1 cut(s) 81
MscI TGGCCA 1 cut(s) 636
MseI TTAA 2 cut(s) 125, 522
MslI CAYNNNNRTG 2 cut(s) 959, 1182
Msp20I TGGCCA 1 cut(s) 636
MspI CCGG 3 cut(s) 260, 275, 551
MspR9I CCNGG 2 cut(s) 642, 999
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 2 cut(s) 642, 999
MvnI CGCG 2 cut(s) 681, 1094
MwoI GCNNNNNNNGC 9 cut(s) 365, 377, 386, 395, 407, 440, 449, 485, 1100
NarI GGCGCC 1 cut(s) 441
NdeII GATC 5 cut(s) 277, 742, 796, 928, 1086
NlaIII CATG 4 cut(s) 110, 368, 916, 1026
NlaIV GGNNCC 3 cut(s) 308, 379, 442
NmuCI GTSAC 1 cut(s) 466
NsiI ATGCAT 1 cut(s) 136
NspI RCATGY 3 cut(s) 368, 916, 1026
NspV TTCGAA 1 cut(s) 75
PceI AGGCCT 1 cut(s) 492
PciI ACATGT 1 cut(s) 912
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 3 cut(s) 82, 315, 1060
PkrI GCNGC 7 cut(s) 13, 59, 370, 400, 481, 502, 505
PleI GAGTC 4 cut(s) 48, 223, 1033, 1042
PluTI GGCGCC 1 cut(s) 444
PpsI GAGTC 4 cut(s) 48, 223, 1033, 1042
PpuMI RGGWCCY 1 cut(s) 473
PscI ACATGT 1 cut(s) 912
PsiI TTATAA 1 cut(s) 816
Psp5II RGGWCCY 1 cut(s) 473
Psp6I CCWGG 2 cut(s) 640, 997
PspGI CCWGG 2 cut(s) 640, 997
PspN4I GGNNCC 3 cut(s) 308, 379, 442
PspPI GGNCC 1 cut(s) 473
PspPPI RGGWCCY 1 cut(s) 473
PstI CTGCAG 1 cut(s) 508
PstNI CAGNNNCTG 2 cut(s) 434, 476
PsuI RGATCY 2 cut(s) 742, 1086
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 2 cut(s) 959, 1182
SalI GTCGAC 1 cut(s) 1036
SaqAI TTAA 2 cut(s) 125, 522
SatI GCNGC 7 cut(s) 12, 58, 369, 399, 480, 501, 504
Sau3AI GATC 5 cut(s) 277, 742, 796, 928, 1086
Sau96I GGNCC 1 cut(s) 473
SchI GAGTC 4 cut(s) 49, 223, 1033, 1043
ScrFI CCNGG 2 cut(s) 642, 999
SduI GDGCHC 1 cut(s) 243
SfaNI GCATC 4 cut(s) 55, 208, 683, 1174
SfcI CTRYAG 2 cut(s) 453, 504
SfoI GGCGCC 1 cut(s) 442
SfuI TTCGAA 1 cut(s) 75
SinI GGWCC 1 cut(s) 473
SmiMI CAYNNNNRTG 2 cut(s) 959, 1182
Sse9I AATT 9 cut(s) 30, 98, 122, 186, 417, 483, 940, 965, 1017
SseBI AGGCCT 1 cut(s) 492
SsiI CCGC 4 cut(s) 104, 681, 1094, 1103
SspDI GGCGCC 1 cut(s) 440
SspMI CTAG 2 cut(s) 390, 878
StuI AGGCCT 1 cut(s) 492
StyD4I CCNGG 2 cut(s) 640, 997
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 2 cut(s) 131, 1146
TaqI TCGA 3 cut(s) 75, 1032, 1037
TasI AATT 9 cut(s) 30, 98, 122, 186, 417, 483, 940, 965, 1017
TfiI GAWTC 3 cut(s) 82, 315, 1060
Tru1I TTAA 2 cut(s) 125, 522
Tru9I TTAA 2 cut(s) 125, 522
TscAI CASTG 2 cut(s) 961, 1209
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 7 cut(s) 11, 57, 368, 398, 479, 500, 503
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 5 cut(s) 144, 839, 1070, 1147, 1179
TspGWI ACGGA 1 cut(s) 1066
TspRI CASTG 2 cut(s) 961, 1209
VpaK11BI GGWCC 1 cut(s) 473
XapI RAATTY 2 cut(s) 30, 965
XceI RCATGY 3 cut(s) 368, 916, 1026
XmiI GTMKAC 1 cut(s) 1037
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 2 cut(s) 390, 878
ZraI GACGTC 1 cut(s) 1144
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.