Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001685.1

Orthogroup ID

OG0003883

Physical Location & Seq

Genomic Coordinates Reverse (-)

246832 .. 249355

Gene Structure 2524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001685.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

atggcaaagctagacttgatacatgcagaggcagataactgtttctcggaagagaatggtcagaatttccaaagaacagaacccaaaaccaatctcggaatcaactgcaagcacacacttgaagagtttaatgcacatatggcacaaccacaagaagctaagggaagttctaatatttcaagctatgattcctacttcaagacagtacaggcaaggaagaaattaccacattcgctacaagaggttttaacaactgcatttgcaaaaatcccagtttcctcttttccaggagttcctggaggcaaagtagttgagattccagcagatacatctatcggcgatgcagtcaagattctgtctgaatgcaacattttgtcagctcctgtgagaaacccagctgcagaaaccagctcagaatggagagataggtacctgggaatcatagattactctgccattattctttgggtgttggagagtgcagaactagctgcagttgctctctcagctacttcagcaacagctgcaggagttggtgcaggagctgttggcgcaattggagcagttgcattgggtgtgaccggtcctgctgcagttgcagggttaaccgctgctgcagttggagctgcggtggctggcggagtggctgcggacaaagggatgggcaaagatgctcccacagctgctgatgaattgggccaagacttttacaaaactatactgcaagatgaacccttcaagtcaaccacagtaaggtcaatacttaaatccttccgctgggcacctttccttccagtagcaaccgatagttctatgttgagcgtcttgctactactctcaaaatataggctcaggaatgtacctgtgatagaacctggccaagctactatcaagaactacattactcaatcagcaattgttcatggtcttgagcgatgcaaaggaagggattggtttgactgcattgccgcaaagcctatatctgatctgggacttccttttatgtccactgatgaggttattagtgtcctgagcgatgacttgatactggaagctttcaagaagatgagagataatcaaattggcggtcttccagttgtagaagggacaaagaagcagatagtcggtaatgtcagcataagagatatcagacacttgctgctcaaacccgagctcttctccaatttcaggaagctcactgtcagggacttcatgagcaccatctcgacaagccagaatattggaaaagccgtcccagcaattacatgcaatctcgagtccactcttggcaatgtgattgaaactcttgcttccaagtccgttcatagaatctacgtggcagggcaggaaggtgaagttgttggtgtcattactctcagagatgtgatttcttgcttcatttatgagccccccaaccactttgatgactgcatggggtctgcgttgaaggagatgctgaatgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

488

Amino Acids

52.21

Weight (kDa)

5.63

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69800 AT1G69800 AT1G69800
fragaria_vesca	FvH4_4g31760 FvH4_4g31760 FvH4_4g31760 FvH4_4g31760 FvH4_4g31780 FvH4_4g31780
malus_domestica	MD13G1077700.v1.1 MD13G1077800.v1.1 MD16G1077600.v1.1
prunus_persica	Prupe.1G269400_v2.0.a1
pyrus_communis	pycom13g06740 pycom16g06700
rosa_chinensis	RchiOBHm_Chr4g0440361 RchiOBHm_Chr4g0440371
rosa_laevigata	RLG00000006187 RLG00000006188
rosa_multiflora	Rmu_sc0001685.1_g000046
rosa_roxburghii	Rroxscaffold_5G00381240 Rroxscaffold_5G00381250
rosa_rugosa	Rorug04G0325800 Rorug04G0325800
rosa_samantha	Rh4AG376900 Rh4AG377000 Rh4BG389900 Rh4BG390000 Rh4CG404700 Rh4CG404800 Rh4DG383600 Rh4DG383700
rosa_wichuraiana	Rw4G032270 Rw4G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	429
AccB1I	GGYRCC	2 cut(s)	429, 781
AciI	CCGC	7 cut(s)	609, 629, 639, 650, 775, 969, 1086
AcoI	YGGCCR	1 cut(s)	877
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	3 cut(s)	207, 431, 861
AfiI	CCNNNNNNNGG	3 cut(s)	753, 777, 1188
AgeI	ACCGGT	1 cut(s)	581
AgsI	TTSAA	7 cut(s)	122, 180, 199, 739, 1060, 1301, 1447
AjnI	CCWGG	4 cut(s)	286, 295, 432, 874
Alw21I	GWGCWC	2 cut(s)	1176, 1220
AlwNI	CAGNNNCTG	3 cut(s)	383, 545, 686
Ama87I	CYCGRG	2 cut(s)	1169, 1274
AoxI	GGCC	2 cut(s)	697, 877
ApoI	RAATTY	1 cut(s)	64
ArsI	GACNNNNNNTTYG	2 cut(s)	1072, 1104
AsiGI	ACCGGT	1 cut(s)	581
Asp718I	GGTACC	1 cut(s)	429
AspLEI	GCGC	1 cut(s)	554
AspS9I	GGNCC	2 cut(s)	584, 697
AsuHPI	GGTGA	1 cut(s)	1364
AvaI	CYCGRG	2 cut(s)	1169, 1274
AvaII	GGWCC	1 cut(s)	584
BaeGI	GKGCMC	1 cut(s)	784
BalI	TGGCCA	1 cut(s)	879
BanI	GGYRCC	2 cut(s)	429, 781
BanII	GRGCYC	2 cut(s)	1176, 1410
BbsI	GAAGAC	1 cut(s)	1082
Bbv12I	GWGCWC	2 cut(s)	1176, 1220
BccI	CCATC	2 cut(s)	655, 1229
BceAI	ACGGC	1 cut(s)	1235
BciT130I	CCWGG	4 cut(s)	288, 297, 434, 876
BfaI	CTAG	2 cut(s)	11, 488
BfmI	CTRYAG	5 cut(s)	399, 492, 525, 591, 615
Bme1390I	CCNGG	4 cut(s)	288, 297, 434, 876
Bme18I	GGWCC	1 cut(s)	584
BmeT110I	CYCGRG	2 cut(s)	1169, 1274
BmgT120I	GGNCC	2 cut(s)	584, 697
BmiI	GGNNCC	2 cut(s)	431, 783
BmrFI	CCNGG	4 cut(s)	288, 297, 434, 876
BmrI	ACTGGG	1 cut(s)	266
BmsI	GCATC	4 cut(s)	331, 661, 926, 1443
BmuI	ACTGGG	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	1082
BplI	GAGNNNNNCTC	2 cut(s)	1163, 1195
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	3 cut(s)	159, 851, 1031
BpuEI	CTTGAG	1 cut(s)	950
BsaAI	YACGTR	1 cut(s)	1336
BsaJI	CCNNGG	1 cut(s)	433
BsaWI	WCCGGW	1 cut(s)	581
BsaXI	ACNNNNNCTCC	4 cut(s)	291, 321, 615, 645
Bsc4I	CCNNNNNNNGG	3 cut(s)	753, 777, 1188
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	4 cut(s)	272, 794, 1053, 1094
Bse3DI	GCAATG	2 cut(s)	963, 1297
BseBI	CCWGG	4 cut(s)	288, 297, 434, 876
BseDI	CCNNGG	1 cut(s)	433
BseGI	GGATG	1 cut(s)	666
BseLI	CCNNNNNNNGG	3 cut(s)	753, 777, 1188
BseMI	GCAATG	2 cut(s)	963, 1297
BseMII	CTCAG	5 cut(s)	426, 519, 865, 1022, 1390
BseNI	ACTGG	4 cut(s)	272, 794, 1053, 1094
BseSI	GKGCMC	1 cut(s)	784
BseYI	CCCAGC	3 cut(s)	394, 777, 1255
BsgI	GTGCAG	2 cut(s)	501, 558
BshFI	GGCC	2 cut(s)	699, 879
BshNI	GGYRCC	2 cut(s)	429, 781
BshTI	ACCGGT	1 cut(s)	581
BsiHKAI	GWGCWC	2 cut(s)	1176, 1220
BsiHKCI	CYCGRG	2 cut(s)	1169, 1274
BsiSI	CCGG	1 cut(s)	582
BslFI	GGGAC	4 cut(s)	1005, 1120, 1220, 1238
BslI	CCNNNNNNNGG	3 cut(s)	753, 777, 1188
BsmFI	GGGAC	4 cut(s)	1005, 1120, 1220, 1238
BsmI	GAATGC	1 cut(s)	368
BsnI	GGCC	2 cut(s)	699, 879
BsoBI	CYCGRG	2 cut(s)	1169, 1274
Bsp1286I	GDGCHC	4 cut(s)	784, 1176, 1220, 1410
Bsp143I	GATC	1 cut(s)	985
BspACI	CCGC	7 cut(s)	609, 629, 639, 650, 775, 969, 1086
BspANI	GGCC	2 cut(s)	699, 879
BspCNI	CTCAG	5 cut(s)	425, 518, 864, 1023, 1389
BspHI	TCATGA	1 cut(s)	1212
BspLI	GGNNCC	2 cut(s)	431, 783
BspMAI	CTGCAG	5 cut(s)	403, 496, 529, 595, 619
BspQI	GCTCTTC	1 cut(s)	1181
BspT107I	GGYRCC	2 cut(s)	429, 781
BsrDI	GCAATG	2 cut(s)	963, 1297
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	4 cut(s)	272, 794, 1053, 1094
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	1 cut(s)	433
BssMI	GATC	1 cut(s)	985
Bst2UI	CCWGG	4 cut(s)	288, 297, 434, 876
Bst4CI	ACNGT	4 cut(s)	41, 205, 751, 1201
Bst6I	CTCTTC	3 cut(s)	45, 117, 1181
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstBAI	YACGTR	1 cut(s)	1336
BstC8I	GCNNGC	2 cut(s)	110, 637
BstDEI	CTNAG	6 cut(s)	159, 412, 505, 851, 1031, 1376
BstF5I	GGATG	1 cut(s)	666
BstHHI	GCGC	1 cut(s)	554
BstKTI	GATC	1 cut(s)	988
BstMBI	GATC	1 cut(s)	985
BstNI	CCWGG	4 cut(s)	288, 297, 434, 876
BstNSI	RCATGY	2 cut(s)	26, 1269
BstSCI	CCNGG	4 cut(s)	286, 295, 432, 874
BstSFI	CTRYAG	5 cut(s)	399, 492, 525, 591, 615
BstSLI	GKGCMC	1 cut(s)	784
BstV2I	GAAGAC	1 cut(s)	1082
BstXI	CCANNNNNNTGG	1 cut(s)	1241
BsuRI	GGCC	2 cut(s)	699, 879
BtgZI	GCGATG	3 cut(s)	354, 949, 1050
BtsCI	GGATG	1 cut(s)	666
BtsIMutI	CAGTG	2 cut(s)	1008, 1197
Cac8I	GCNNGC	2 cut(s)	110, 637
CaiI	CAGNNNCTG	3 cut(s)	383, 545, 686
CciI	TCATGA	1 cut(s)	1212
CfoI	GCGC	1 cut(s)	554
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	2 cut(s)	584, 697
CseI	GACGC	1 cut(s)	811
Csp6I	GTAC	3 cut(s)	206, 430, 860
CspAI	ACCGGT	1 cut(s)	581
CviAII	CATG	5 cut(s)	23, 923, 1213, 1266, 1432
CviQI	GTAC	3 cut(s)	206, 430, 860
DdeI	CTNAG	6 cut(s)	159, 412, 505, 851, 1031, 1376
DpnI	GATC	1 cut(s)	987
DpnII	GATC	1 cut(s)	985
EaeI	YGGCCR	1 cut(s)	877
Eam1104I	CTCTTC	3 cut(s)	45, 117, 1181
EarI	CTCTTC	3 cut(s)	45, 117, 1181
EciI	GGCGGA	1 cut(s)	654
Ecl136II	GAGCTC	1 cut(s)	1174
Eco24I	GRGCYC	2 cut(s)	1176, 1410
Eco32I	GATATC	1 cut(s)	1147
Eco47I	GGWCC	1 cut(s)	584
Eco53kI	GAGCTC	1 cut(s)	1174
Eco57I	CTGAAG	1 cut(s)	498
Eco88I	CYCGRG	2 cut(s)	1169, 1274
EcoICRI	GAGCTC	1 cut(s)	1174
EcoRII	CCWGG	4 cut(s)	286, 295, 432, 874
EcoRV	GATATC	1 cut(s)	1147
EcoT38I	GRGCYC	2 cut(s)	1176, 1410
FaeI	CATG	5 cut(s)	26, 926, 1216, 1269, 1435
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	4 cut(s)	1005, 1120, 1220, 1238
FatI	CATG	5 cut(s)	22, 922, 1212, 1265, 1431
FauNDI	CATATG	1 cut(s)	138
FokI	GGATG	1 cut(s)	673
FriOI	GRGCYC	2 cut(s)	1176, 1410
FspBI	CTAG	2 cut(s)	11, 488
GlaI	GCGC	1 cut(s)	553
GsaI	CCCAGC	3 cut(s)	398, 781, 1259
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	2 cut(s)	699, 879
HapII	CCGG	1 cut(s)	582
HgaI	GACGC	1 cut(s)	811
HhaI	GCGC	1 cut(s)	554
Hin1II	CATG	5 cut(s)	26, 926, 1216, 1269, 1435
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HincII	GTYRAC	2 cut(s)	606, 744
HindII	GTYRAC	2 cut(s)	606, 744
HindIII	AAGCTT	1 cut(s)	1053
HinfI	GANTC	7 cut(s)	99, 188, 316, 352, 438, 1277, 1329
HpaI	GTTAAC	1 cut(s)	606
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	1 cut(s)	1364
Hpy166II	GTNNAC	4 cut(s)	606, 744, 1008, 1281
Hpy188I	TCNGA	8 cut(s)	49, 63, 98, 361, 415, 985, 1151, 1379
Hpy8I	GTNNAC	4 cut(s)	606, 744, 1008, 1281
HpyAV	CCTTC	7 cut(s)	745, 781, 800, 939, 1097, 1343, 1441
HpyCH4III	ACNGT	4 cut(s)	41, 205, 751, 1201
HpyCH4IV	ACGT	1 cut(s)	1335
HpyF3I	CTNAG	6 cut(s)	159, 412, 505, 851, 1031, 1376
HpySE526I	ACGT	1 cut(s)	1335
Hsp92II	CATG	5 cut(s)	26, 926, 1216, 1269, 1435
HspAI	GCGC	1 cut(s)	552
KpnI	GGTACC	1 cut(s)	433
KspAI	GTTAAC	1 cut(s)	606
Kzo9I	GATC	1 cut(s)	985
LguI	GCTCTTC	1 cut(s)	1181
LmnI	GCTCC	5 cut(s)	385, 542, 560, 623, 679
LweI	GCATC	4 cut(s)	331, 661, 926, 1443
MaeI	CTAG	2 cut(s)	11, 488
MaeII	ACGT	1 cut(s)	1335
MaeIII	GTNAC	1 cut(s)	577
MalI	GATC	1 cut(s)	987
MboI	GATC	1 cut(s)	985
MboII	GAAGA	6 cut(s)	62, 134, 229, 1075, 1082, 1168
MfeI	CAATTG	2 cut(s)	555, 915
MhlI	GDGCHC	4 cut(s)	784, 1176, 1220, 1410
MlsI	TGGCCA	1 cut(s)	879
MluCI	AATT	8 cut(s)	64, 221, 555, 692, 915, 1080, 1183, 1260
MluNI	TGGCCA	1 cut(s)	879
MlyI	GAGTC	1 cut(s)	1286
MmeI	TCCRAC	2 cut(s)	453, 601
MnlI	CCTC	5 cut(s)	22, 235, 289, 293, 1009
Mox20I	TGGCCA	1 cut(s)	879
MscI	TGGCCA	1 cut(s)	879
MseI	TTAA	4 cut(s)	129, 248, 605, 765
MslI	CAYNNNNRTG	1 cut(s)	1422
Msp20I	TGGCCA	1 cut(s)	879
MspA1I	CMGCKG	5 cut(s)	398, 524, 611, 683, 777
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	4 cut(s)	288, 297, 434, 876
MunI	CAATTG	2 cut(s)	555, 915
Mva1269I	GAATGC	1 cut(s)	368
MvaI	CCWGG	4 cut(s)	288, 297, 434, 876
NdeI	CATATG	1 cut(s)	138
NdeII	GATC	1 cut(s)	985
NlaIII	CATG	5 cut(s)	26, 926, 1216, 1269, 1435
NlaIV	GGNNCC	2 cut(s)	431, 783
NmuCI	GTSAC	1 cut(s)	577
NspI	RCATGY	2 cut(s)	26, 1269
PaeR7I	CTCGAG	1 cut(s)	1274
PagI	TCATGA	1 cut(s)	1212
PciSI	GCTCTTC	1 cut(s)	1181
PctI	GAATGC	1 cut(s)	368
PfeI	GAWTC	6 cut(s)	99, 188, 316, 352, 438, 1329
PfoI	TCCNGGA	2 cut(s)	286, 295
PinAI	ACCGGT	1 cut(s)	581
PleI	GAGTC	1 cut(s)	1285
PpsI	GAGTC	1 cut(s)	1285
Ppu21I	YACGTR	1 cut(s)	1336
Psp124BI	GAGCTC	1 cut(s)	1176
Psp6I	CCWGG	4 cut(s)	286, 295, 432, 874
PspFI	CCCAGC	3 cut(s)	394, 777, 1255
PspGI	CCWGG	4 cut(s)	286, 295, 432, 874
PspN4I	GGNNCC	2 cut(s)	431, 783
PspPI	GGNCC	2 cut(s)	584, 697
PstI	CTGCAG	5 cut(s)	403, 496, 529, 595, 619
PstNI	CAGNNNCTG	3 cut(s)	383, 545, 686
PvuII	CAGCTG	3 cut(s)	398, 524, 683
RsaI	GTAC	3 cut(s)	207, 431, 861
RsaNI	GTAC	3 cut(s)	206, 430, 860
RseI	CAYNNNNRTG	1 cut(s)	1422
SacI	GAGCTC	1 cut(s)	1176
SapI	GCTCTTC	1 cut(s)	1181
SaqAI	TTAA	4 cut(s)	129, 248, 605, 765
Sau3AI	GATC	1 cut(s)	985
Sau96I	GGNCC	2 cut(s)	584, 697
SchI	GAGTC	1 cut(s)	1286
ScrFI	CCNGG	4 cut(s)	288, 297, 434, 876
SduI	GDGCHC	4 cut(s)	784, 1176, 1220, 1410
SfaNI	GCATC	4 cut(s)	331, 661, 926, 1443
SfcI	CTRYAG	5 cut(s)	399, 492, 525, 591, 615
Sfr274I	CTCGAG	1 cut(s)	1274
SinI	GGWCC	1 cut(s)	584
SlaI	CTCGAG	1 cut(s)	1274
SmiMI	CAYNNNNRTG	1 cut(s)	1422
SmlI	CTYRAG	2 cut(s)	929, 1274
SmoI	CTYRAG	2 cut(s)	929, 1274
Sse9I	AATT	8 cut(s)	64, 221, 555, 692, 915, 1080, 1183, 1260
SsiI	CCGC	7 cut(s)	609, 629, 639, 650, 775, 969, 1086
SspI	AATATT	2 cut(s)	175, 1240
SspMI	CTAG	2 cut(s)	11, 488
SstI	GAGCTC	1 cut(s)	1176
StyD4I	CCNGG	4 cut(s)	286, 295, 432, 874
TaaI	ACNGT	4 cut(s)	41, 205, 751, 1201
TaiI	ACGT	1 cut(s)	1338
TaqI	TCGA	2 cut(s)	1226, 1275
TasI	AATT	8 cut(s)	64, 221, 555, 692, 915, 1080, 1183, 1260
TatI	WGTACW	1 cut(s)	205
TauI	GCSGC	1 cut(s)	971
TfiI	GAWTC	6 cut(s)	99, 188, 316, 352, 438, 1329
Tru1I	TTAA	4 cut(s)	129, 248, 605, 765
Tru9I	TTAA	4 cut(s)	129, 248, 605, 765
TscAI	CASTG	2 cut(s)	1015, 1204
TseFI	GTSAC	1 cut(s)	577
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	6 cut(s)	705, 744, 911, 1201, 1313, 1387
TspGWI	ACGGA	1 cut(s)	1309
TspRI	CASTG	2 cut(s)	1015, 1204
VpaK11BI	GGWCC	1 cut(s)	584
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	2 cut(s)	26, 1269
XhoI	CTCGAG	1 cut(s)	1274
XspI	CTAG	2 cut(s)	11, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.