FvH4_4g31780

SNF1-related protein kinase regulatory subunit gamma-1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
30765253 .. 30768006
2754 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g31780.t1

Sequence Viewer

Length: 1380 bp
ATGACAGAAGCAGCACAAGAGGCAAGGGGAATTCCCAAGAGCCCTAGAAGGTCAAGCTGCTACGATGCCTACTTTGAAAGGATTCAGTCCAGGAAGAAATTACCACATGAGCTTCAAGAAAATTTAACATATGCATTTTCAAAAGTTCCAGTTTCGTCTTTCCAAGCCCTTCAGGGAGGAAAAGTAATTGAGATTGTAGCAGATATATCTATTCCTGATGCAGTCAAGACTCTCTCAGAGCACAAGATTTTGTCAGCTCCAGTCATTACTATGCCGGATCAAACATGTTCGGATTGGAGAGAAAGGTATCTTGGAATCATTGATTACTCTGCTGTTCTTAATTGGGTGTTGGAGAGTGCAGAACATGCTGCTGAAGGTCCCTCGCCAGCTAGTTCAATAGCAACTACGGCTGGTGGAATTGGTGGTGCAGGAGCTGTTGGCGCCATTGGAGCTGTAGCATTGGGGGTCACAGGTCCTGCTGCAGTTGCAGGCCTTACTGCTGCTGCAATTTGTTCCGCTGTGGCTGGCAGTGCTGTTGGAAAAATAGATGCAGCTGCAGAGAATGAGGAGGACAAAGATTCTCCCACAACTGCTGATAAATTGACAGGAGATTTTGACAAGGTTATACTGCAAGATGAACCCTGCAAGTCAACAACGGCAAAGTCCATAGTTAAATCCTTCCGGGAAACACCTTTCCTTCCGGTAGCAGAAGATAGTTCTATGTTGACCATCTTGCTACTACTCTCAAAATATAGGATGAGGAATGTACCTGTAATAGAAGACGGCCAACCAAAACTTAAGAACTACATTACTCAGTCAGCAGTTATATGCGGTCTTGAAGGATGCAAAGGAATGGAGTGGTTTGACTGCATTGCAGAAAAACCTATCTCGGATTTGGGACTTCCATTTATGTCCTGTAATGAGGTTATTGACATCCAGAGTGAGGATCTGATAATGGAAGCTTTCAAGAAAATGAAAGAACAGAAAATCGGTGGTCTTCCAGTAGTAGATGGGCAAAAGAAGAAGCTAGTTGGTAATGTCAGCGTAAGCGATATCAGATATGTGTTTCTCAAACACGATCTCCTCTCCAATTTCAGGAAGCTCACTGTTATGGATTTCCTGACTACCATCTCAACCAGCAAAGAACCTGGAAATCCCATCCAACCAATTACATGCAATATCGAGTCGAGCCTTGGGAATGTGATTGAGATTCTTGCTTCCAAGTCGGTTCATAGGGTCTATGTGGTAGGTGCGGAGGAAGGGAAAGCTGTTGGTGTGATTACACTCAGAGATGTCATTTCTTGCTTCATATATGAACCCCCCAATTACTTTGATGCCTACTTGGGGTTTGCAGTGCAGGAGATACTGAAGCAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

460

Amino Acids

49.46

Weight (kDa)

5.18

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 309 - 356 8.2e-08 CBS domain
CBS PF00571 388 - 435 1.3e-08 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 440
AciI CCGC 3 cut(s) 516, 831, 1253
AclWI GGATC 2 cut(s) 285, 954
AcoI YGGCCR 1 cut(s) 784
AcsI RAATTY 2 cut(s) 30, 121
AcuI CTGAAG 2 cut(s) 155, 393
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 1 cut(s) 768
AfiI CCNNNNNNNGG 3 cut(s) 943, 1095, 1344
AflII CTTAAG 1 cut(s) 797
AflIII ACRYGT 1 cut(s) 284
AgsI TTSAA 6 cut(s) 77, 116, 141, 396, 839, 967
AjnI CCWGG 2 cut(s) 89, 1147
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
Alw21I GWGCWC 1 cut(s) 243
AlwI GGATC 2 cut(s) 285, 954
AlwNI CAGNNNCTG 2 cut(s) 434, 476
AoxI GGCC 2 cut(s) 490, 784
ApeKI GCWGC 9 cut(s) 11, 57, 368, 479, 500, 503, 551, 554, 1372
ApoI RAATTY 2 cut(s) 30, 121
Asp700I GAANNNNTTC 1 cut(s) 81
AspLEI GCGC 1 cut(s) 443
AspS9I GGNCC 2 cut(s) 377, 473
AsuC2I CCSGG 1 cut(s) 683
AvaII GGWCC 2 cut(s) 377, 473
BanI GGYRCC 1 cut(s) 440
BanII GRGCYC 1 cut(s) 44
BbsI GAAGAC 2 cut(s) 786, 989
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 8 cut(s) 23, 44, 355, 466, 487, 490, 541, 563
BccI CCATC 4 cut(s) 737, 1004, 1136, 1166
BceAI ACGGC 3 cut(s) 423, 672, 799
BciT130I CCWGG 2 cut(s) 91, 1149
BcnI CCSGG 1 cut(s) 683
BfaI CTAG 3 cut(s) 45, 390, 1028
BfmI CTRYAG 3 cut(s) 453, 480, 555
BfoI RGCGCY 1 cut(s) 444
BfrI CTTAAG 1 cut(s) 797
BisI GCNGC 9 cut(s) 12, 58, 369, 480, 501, 504, 552, 555, 1373
BlsI GCNGC 9 cut(s) 13, 59, 370, 481, 502, 505, 553, 556, 1374
Bme1390I CCNGG 3 cut(s) 91, 683, 1149
Bme18I GGWCC 2 cut(s) 377, 473
BmgT120I GGNCC 2 cut(s) 377, 473
BmiI GGNNCC 2 cut(s) 379, 442
BmrFI CCNGG 3 cut(s) 91, 683, 1149
BmsI GCATC 5 cut(s) 55, 208, 538, 833, 1324
BpiI GAAGAC 2 cut(s) 786, 989
BpmI CTGGAG 1 cut(s) 243
BpuMI CCSGG 1 cut(s) 683
BsaHI GRCGYC 1 cut(s) 441
BsaJI CCNNGG 1 cut(s) 1192
BsaWI WCCGGW 1 cut(s) 700
BsaXI ACNNNNNCTCC 4 cut(s) 168, 198, 1065, 1095
Bsc4I CCNNNNNNNGG 3 cut(s) 943, 1095, 1344
Bse1I ACTGG 3 cut(s) 149, 260, 1001
Bse3DI GCAATG 1 cut(s) 870
BseBI CCWGG 2 cut(s) 91, 1149
BseDI CCNNGG 1 cut(s) 1192
BseGI GGATG 4 cut(s) 762, 848, 933, 1158
BseLI CCNNNNNNNGG 3 cut(s) 943, 1095, 1344
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 3 cut(s) 249, 827, 1300
BseNI ACTGG 3 cut(s) 149, 260, 1001
BseRI GAGGAG 2 cut(s) 581, 1073
BseXI GCAGC 8 cut(s) 23, 44, 355, 466, 487, 490, 541, 563
BsgI GTGCAG 3 cut(s) 378, 447, 1376
BshFI GGCC 2 cut(s) 492, 786
BshNI GGYRCC 1 cut(s) 440
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 3 cut(s) 275, 682, 701
BslFI GGGAC 2 cut(s) 363, 912
BslI CCNNNNNNNGG 3 cut(s) 943, 1095, 1344
BsmFI GGGAC 2 cut(s) 363, 912
BsnI GGCC 2 cut(s) 492, 786
Bsp1286I GDGCHC 2 cut(s) 44, 243
Bsp143I GATC 3 cut(s) 277, 946, 1078
BspACI CCGC 3 cut(s) 516, 831, 1253
BspANI GGCC 2 cut(s) 492, 786
BspCNI CTCAG 3 cut(s) 248, 826, 1299
BspLI GGNNCC 2 cut(s) 379, 442
BspMAI CTGCAG 2 cut(s) 484, 559
BspPI GGATC 2 cut(s) 285, 954
BspT107I GGYRCC 1 cut(s) 440
BspTI CTTAAG 1 cut(s) 797
BsrDI GCAATG 1 cut(s) 870
BsrI ACTGG 3 cut(s) 149, 260, 1001
BssECI CCNNGG 1 cut(s) 1192
BssMI GATC 3 cut(s) 277, 946, 1078
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 1192
Bst2UI CCWGG 2 cut(s) 91, 1149
Bst4CI ACNGT 1 cut(s) 1108
BstACI GRCGYC 1 cut(s) 441
BstAFI CTTAAG 1 cut(s) 797
BstAPI GCANNNNNTGC 1 cut(s) 365
BstC8I GCNNGC 3 cut(s) 387, 490, 526
BstDEI CTNAG 3 cut(s) 235, 813, 1286
BstF5I GGATG 4 cut(s) 762, 848, 933, 1158
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 3 cut(s) 280, 949, 1081
BstMBI GATC 3 cut(s) 277, 946, 1078
BstMWI GCNNNNNNNGC 7 cut(s) 20, 365, 407, 440, 449, 485, 530
BstNI CCWGG 2 cut(s) 91, 1149
BstNSI RCATGY 3 cut(s) 288, 368, 1176
BstSCI CCNGG 3 cut(s) 89, 681, 1147
BstSFI CTRYAG 3 cut(s) 453, 480, 555
BstV1I GCAGC 8 cut(s) 23, 44, 355, 466, 487, 490, 541, 563
BstV2I GAAGAC 2 cut(s) 786, 989
BstX2I RGATCY 1 cut(s) 946
BstYI RGATCY 1 cut(s) 946
BsuRI GGCC 2 cut(s) 492, 786
BtsCI GGATG 4 cut(s) 762, 848, 933, 1158
BtsI GCAGTG 2 cut(s) 535, 1359
BtsIMutI CAGTG 3 cut(s) 535, 1104, 1359
Cac8I GCNNGC 3 cut(s) 387, 490, 526
CaiI CAGNNNCTG 2 cut(s) 434, 476
CfoI GCGC 1 cut(s) 443
Cfr13I GGNCC 2 cut(s) 377, 473
Csp6I GTAC 1 cut(s) 767
CviAII CATG 4 cut(s) 107, 285, 365, 1173
CviQI GTAC 1 cut(s) 767
DdeI CTNAG 3 cut(s) 235, 813, 1286
DinI GGCGCC 1 cut(s) 442
DpnI GATC 3 cut(s) 279, 948, 1080
DpnII GATC 3 cut(s) 277, 946, 1078
EaeI YGGCCR 1 cut(s) 784
Eco130I CCWWGG 1 cut(s) 1192
Eco147I AGGCCT 1 cut(s) 492
Eco24I GRGCYC 1 cut(s) 44
Eco32I GATATC 1 cut(s) 1054
Eco47I GGWCC 2 cut(s) 377, 473
Eco57I CTGAAG 2 cut(s) 155, 393
EcoO109I RGGNCCY 2 cut(s) 377, 473
EcoRI GAATTC 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 89, 1147
EcoRV GATATC 1 cut(s) 1054
EcoT14I CCWWGG 1 cut(s) 1192
EcoT22I ATGCAT 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 44
EgeI GGCGCC 1 cut(s) 442
EheI GGCGCC 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 1192
FaeI CATG 4 cut(s) 110, 288, 368, 1176
FaqI GGGAC 2 cut(s) 363, 912
FatI CATG 4 cut(s) 106, 284, 364, 1172
FauNDI CATATG 1 cut(s) 130
Fnu4HI GCNGC 9 cut(s) 12, 58, 369, 480, 501, 504, 552, 555, 1373
FokI GGATG 4 cut(s) 769, 855, 920, 1145
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 9 cut(s) 12, 58, 369, 480, 501, 504, 552, 555, 1373
FspBI CTAG 3 cut(s) 45, 390, 1028
GlaI GCGC 1 cut(s) 442
GluI GCNGC 9 cut(s) 12, 58, 369, 480, 501, 504, 552, 555, 1373
GsuI CTGGAG 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 444
HaeIII GGCC 2 cut(s) 492, 786
HapII CCGG 3 cut(s) 275, 682, 701
HhaI GCGC 1 cut(s) 443
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 4 cut(s) 110, 288, 368, 1176
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HincII GTYRAC 2 cut(s) 651, 726
HindII GTYRAC 2 cut(s) 651, 726
HindIII AAGCTT 1 cut(s) 960
HinfI GANTC 6 cut(s) 82, 229, 315, 578, 1184, 1210
HpaII CCGG 3 cut(s) 275, 682, 701
Hpy166II GTNNAC 2 cut(s) 651, 726
Hpy188I TCNGA 6 cut(s) 238, 292, 892, 951, 1058, 1289
Hpy188III TCNNGA 8 cut(s) 116, 215, 226, 836, 937, 967, 1096, 1120
Hpy8I GTNNAC 2 cut(s) 651, 726
HpyAV CCTTC 7 cut(s) 42, 179, 368, 688, 707, 833, 1253
HpyCH4III ACNGT 1 cut(s) 1108
HpyF10VI GCNNNNNNNGC 7 cut(s) 20, 365, 407, 440, 449, 485, 530
HpyF3I CTNAG 3 cut(s) 235, 813, 1286
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 4 cut(s) 110, 288, 368, 1176
HspAI GCGC 1 cut(s) 441
KasI GGCGCC 1 cut(s) 440
Kzo9I GATC 3 cut(s) 277, 946, 1078
LmnI GCTCC 3 cut(s) 262, 431, 449
Lsp1109I GCAGC 8 cut(s) 23, 44, 355, 466, 487, 490, 541, 563
LweI GCATC 5 cut(s) 55, 208, 538, 833, 1324
MaeI CTAG 3 cut(s) 45, 390, 1028
MaeIII GTNAC 1 cut(s) 466
MalI GATC 3 cut(s) 279, 948, 1080
MboI GATC 3 cut(s) 277, 946, 1078
MboII GAAGA 5 cut(s) 106, 722, 791, 989, 1033
MflI RGATCY 1 cut(s) 946
MhlI GDGCHC 2 cut(s) 44, 243
Mly113I GGCGCC 1 cut(s) 441
MlyI GAGTC 2 cut(s) 223, 1193
MmeI TCCRAC 3 cut(s) 330, 517, 1186
Mph1103I ATGCAT 1 cut(s) 136
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 4 cut(s) 125, 339, 672, 798
MslI CAYNNNNRTG 2 cut(s) 269, 1109
MspA1I CMGCKG 2 cut(s) 518, 554
MspCI CTTAAG 1 cut(s) 797
MspI CCGG 3 cut(s) 275, 682, 701
MspR9I CCNGG 3 cut(s) 91, 683, 1149
MvaI CCWGG 2 cut(s) 91, 1149
MwoI GCNNNNNNNGC 7 cut(s) 20, 365, 407, 440, 449, 485, 530
NarI GGCGCC 1 cut(s) 441
NciI CCSGG 1 cut(s) 683
NdeI CATATG 1 cut(s) 130
NdeII GATC 3 cut(s) 277, 946, 1078
NlaIII CATG 4 cut(s) 110, 288, 368, 1176
NlaIV GGNNCC 2 cut(s) 379, 442
NmuCI GTSAC 1 cut(s) 466
NsiI ATGCAT 1 cut(s) 136
NspI RCATGY 3 cut(s) 288, 368, 1176
PceI AGGCCT 1 cut(s) 492
PciI ACATGT 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 4 cut(s) 82, 315, 578, 1210
PfoI TCCNGGA 2 cut(s) 89, 681
PkrI GCNGC 9 cut(s) 13, 59, 370, 481, 502, 505, 553, 556, 1374
PleI GAGTC 2 cut(s) 223, 1192
PluTI GGCGCC 1 cut(s) 444
PpsI GAGTC 2 cut(s) 223, 1192
PpuMI RGGWCCY 2 cut(s) 377, 473
PscI ACATGT 1 cut(s) 284
Psp5II RGGWCCY 2 cut(s) 377, 473
Psp6I CCWGG 2 cut(s) 89, 1147
PspGI CCWGG 2 cut(s) 89, 1147
PspN4I GGNNCC 2 cut(s) 379, 442
PspPI GGNCC 2 cut(s) 377, 473
PspPPI RGGWCCY 2 cut(s) 377, 473
PstI CTGCAG 2 cut(s) 484, 559
PstNI CAGNNNCTG 2 cut(s) 434, 476
PsuI RGATCY 1 cut(s) 946
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 1 cut(s) 768
RsaNI GTAC 1 cut(s) 767
RseI CAYNNNNRTG 2 cut(s) 269, 1109
SaqAI TTAA 4 cut(s) 125, 339, 672, 798
SatI GCNGC 9 cut(s) 12, 58, 369, 480, 501, 504, 552, 555, 1373
Sau3AI GATC 3 cut(s) 277, 946, 1078
Sau96I GGNCC 2 cut(s) 377, 473
SchI GAGTC 2 cut(s) 223, 1193
ScrFI CCNGG 3 cut(s) 91, 683, 1149
SduI GDGCHC 2 cut(s) 44, 243
SfaNI GCATC 5 cut(s) 55, 208, 538, 833, 1324
SfcI CTRYAG 3 cut(s) 453, 480, 555
SfoI GGCGCC 1 cut(s) 442
SinI GGWCC 2 cut(s) 377, 473
SmiMI CAYNNNNRTG 2 cut(s) 269, 1109
SmlI CTYRAG 1 cut(s) 797
SmoI CTYRAG 1 cut(s) 797
SseBI AGGCCT 1 cut(s) 492
SsiI CCGC 3 cut(s) 516, 831, 1253
SspDI GGCGCC 1 cut(s) 440
SspMI CTAG 3 cut(s) 45, 390, 1028
StuI AGGCCT 1 cut(s) 492
StyD4I CCNGG 3 cut(s) 89, 681, 1147
StyI CCWWGG 1 cut(s) 1192
TaaI ACNGT 1 cut(s) 1108
TaqI TCGA 2 cut(s) 1182, 1187
TfiI GAWTC 4 cut(s) 82, 315, 578, 1210
Tru1I TTAA 4 cut(s) 125, 339, 672, 798
Tru9I TTAA 4 cut(s) 125, 339, 672, 798
TscAI CASTG 3 cut(s) 535, 1111, 1359
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 9 cut(s) 11, 57, 368, 479, 500, 503, 551, 554, 1372
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 5 cut(s) 651, 989, 1220, 1297, 1329
TspRI CASTG 3 cut(s) 535, 1111, 1359
Vha464I CTTAAG 1 cut(s) 797
VpaK11BI GGWCC 2 cut(s) 377, 473
XapI RAATTY 2 cut(s) 30, 121
XceI RCATGY 3 cut(s) 288, 368, 1176
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 3 cut(s) 45, 390, 1028
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.