MD13G1077800.v1.1

SNF1-related protein kinase regulatory subunit gamma-1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
5475730 .. 5478193
2464 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1077800.v1.1.491

Sequence Viewer

Length: 1347 bp
ATGGCAGATGCACAACCCCAAGAACAAGAGGTGAAGGGCACAAGTCCTAAAATTTCATCCTACGATGCCTACTTCGACACGATCCAGTCCCGGAAGAAATTATCTCGTCCCCTACAAGAAAATTTAACATTTGCATTTTCAAAAGTTCCAGTCTCATCTTTCCAAGGAGTTCCTGGAGGCAAAGTGGTGGAGATTCAAGCGGATACATCAATTGCTGAAGCAGTAAAGACTCTGTCTAACCACCACATTTTGTCAGCTACTGTGAGAAACCCGGAAGCAGATGCAAGTGCAGATTGGAGGGAGAGGTACCTGGGAATCGTGGATTATTCCGCCATTCTTCTCTGGGTGTTGGAGACCAGTGCATTTTCTCCTTCGGCTCACTCAACCGCGGCTGTAGTTGGCGGTGCAGGAGCCATGGGCGCTATTGGAGCAGTTGCTCTGGGCGTCACTGGTCCTGCTGCTCTTGCAGGCCTAACTGCAGCAGCAGTTTGCTCTGCCGTGGCTGGCAGCGCAGTTGGAAAAATAGGTGCAGCTGAAGACAAAGGAGAGGGCAGAGATTCTCCCACAGATGCTGATAAACTGAGCGAAGAACTCGACAGCGTTATACTACAAGATGAACCCTTCAAGACAACCACAGTAAGATCAATACTGAAATCCTTTCGCTGGGAGTCATTTCTTCCGGTAGGGACAGATAGTTCAATGTTGACCGTCTTGCTACTACTCTCAAAATATAGGATGAGAAATGTGCCTGTAATAGAATTGGGCCAACCCGATATTAAGAACTTCATCACACAATCAGCAGTTGTTCAGGGTCTTGAGGGATGCAAAGGAATGGAATGGTTCGACTGCATTGCTGCAAAGTCCATCTCTGACCTGGGACTTCCTTTTATGTCCTCCATTGAGGTTATTAGCACCAATGTCGATGATCTGGTACTTGAAGCGTTCAAGAAAATGAGAGAGAACCAAATTGGTGGGCTTCCAGTTGTGCAGGAGCCAAAGAAGAAGATAGTTGGTAATGTAAGCATAAGCGATATCAGATTCTCTCTTCTGAAACCAGAGCTCTTCAACAATTTCAGGAATCTCAGTGTTAGGGACTTCATGAACACAATCTCAGAAAGGCAGGGAAGACAAATATTACCAATTACATGCAATCTGCAGTCGACTCTCGGCGATGTGATTGAAACTCTTGCTTCCAAATCGGTTCACAGAGTGTACGTGGTGGATGATGAAGGAGAAGTTGTTGGTGTGATTACACTCAGAGATGTGATTTCTTGCTTCATATTTGAACCACCCAATCACTTTGATGTCTACTTGGGGTTTGCTAAGGAGCAGATAATGAGGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

449

Amino Acids

48.47

Weight (kDa)

5.15

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 297 - 349 1.7e-08 CBS domain
CBS PF00571 380 - 424 1.2e-10 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 306
AccB1I GGYRCC 1 cut(s) 306
AccI GTMKAC 2 cut(s) 1160, 1308
AccII CGCG 1 cut(s) 389
AciI CCGC 5 cut(s) 200, 330, 387, 389, 402
AclWI GGATC 1 cut(s) 76
AcsI RAATTY 2 cut(s) 51, 121
AcuI CTGAAG 2 cut(s) 237, 555
AcyI GRCGYC 1 cut(s) 444
AdeI CACNNNGTG 1 cut(s) 1210
AfaI GTAC 3 cut(s) 308, 933, 1214
AfiI CCNNNNNNNGG 1 cut(s) 663
AgsI TTSAA 9 cut(s) 141, 197, 625, 699, 938, 946, 1066, 1181, 1286
AjnI CCWGG 3 cut(s) 172, 309, 873
AloI GAACNNNNNNTCC 2 cut(s) 679, 711
AluBI AGCT 3 cut(s) 257, 533, 1060
AluI AGCT 3 cut(s) 257, 533, 1060
Alw21I GWGCWC 1 cut(s) 1062
Alw26I GTCTC 2 cut(s) 157, 347
AlwI GGATC 1 cut(s) 76
AlwNI CAGNNNCTG 2 cut(s) 260, 572
AoxI GGCC 2 cut(s) 469, 763
ApeKI GCWGC 6 cut(s) 458, 479, 482, 507, 530, 854
ApoI RAATTY 2 cut(s) 51, 121
Asp718I GGTACC 1 cut(s) 306
AspLEI GCGC 2 cut(s) 422, 512
AspS9I GGNCC 2 cut(s) 452, 763
AsuC2I CCSGG 2 cut(s) 91, 272
AsuHPI GGTGA 1 cut(s) 43
AvaII GGWCC 1 cut(s) 452
BaeGI GKGCMC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 1062
BbsI GAAGAC 2 cut(s) 543, 1132
Bbv12I GWGCWC 1 cut(s) 1062
BbvI GCAGC 6 cut(s) 445, 491, 494, 519, 542, 841
BccI CCATC 1 cut(s) 872
BceAI ACGGC 1 cut(s) 482
BcgI CGANNNNNNTGC 4 cut(s) 833, 867, 901, 935
BciT130I CCWGG 3 cut(s) 174, 311, 875
BciVI GTATCC 1 cut(s) 196
BcnI CCSGG 2 cut(s) 91, 272
BcoDI GTCTC 2 cut(s) 157, 347
BfmI CTRYAG 3 cut(s) 393, 477, 1154
BfoI RGCGCY 1 cut(s) 423
BfuI GTATCC 1 cut(s) 196
BisI GCNGC 7 cut(s) 390, 459, 480, 483, 508, 531, 855
BlsI GCNGC 7 cut(s) 391, 460, 481, 484, 509, 532, 856
Bme1390I CCNGG 5 cut(s) 91, 174, 272, 311, 875
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 2 cut(s) 452, 763
BmiI GGNNCC 3 cut(s) 308, 412, 993
BmrFI CCNGG 5 cut(s) 91, 174, 272, 311, 875
BmsI GCATC 4 cut(s) 55, 271, 559, 812
BpiI GAAGAC 2 cut(s) 543, 1132
BpmI CTGGAG 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 1323
BpuEI CTTGAG 1 cut(s) 836
BpuMI CCSGG 2 cut(s) 91, 272
BsaAI YACGTR 1 cut(s) 1216
BsaHI GRCGYC 1 cut(s) 444
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 6 cut(s) 163, 310, 387, 414, 498, 874
BsaWI WCCGGW 1 cut(s) 679
BsaXI ACNNNNNCTCC 4 cut(s) 168, 198, 1224, 1254
Bsc4I CCNNNNNNNGG 1 cut(s) 663
Bse1I ACTGG 5 cut(s) 85, 149, 357, 454, 980
Bse3DI GCAATG 1 cut(s) 849
BseBI CCWGG 3 cut(s) 174, 311, 875
BseDI CCNNGG 6 cut(s) 163, 310, 387, 414, 498, 874
BseGI GGATG 4 cut(s) 56, 741, 827, 1228
BseLI CCNNNNNNNGG 1 cut(s) 663
BseMI GCAATG 1 cut(s) 849
BseMII CTCAG 4 cut(s) 572, 1096, 1125, 1270
BseNI ACTGG 5 cut(s) 85, 149, 357, 454, 980
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 6 cut(s) 445, 491, 494, 519, 542, 841
BseYI CCCAGC 1 cut(s) 663
BsgI GTGCAG 4 cut(s) 309, 426, 549, 1007
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 2 cut(s) 471, 765
BshNI GGYRCC 1 cut(s) 306
BsiHKAI GWGCWC 1 cut(s) 1062
BsiSI CCGG 3 cut(s) 91, 272, 680
BslFI GGGAC 5 cut(s) 73, 93, 700, 891, 1106
BslI CCNNNNNNNGG 1 cut(s) 663
BsmAI GTCTC 2 cut(s) 157, 347
BsmFI GGGAC 5 cut(s) 73, 93, 700, 891, 1106
BsnI GGCC 2 cut(s) 471, 765
Bso31I GGTCTC 1 cut(s) 347
Bsp1286I GDGCHC 2 cut(s) 41, 1062
Bsp143I GATC 3 cut(s) 81, 641, 925
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 5 cut(s) 200, 330, 387, 389, 402
BspANI GGCC 2 cut(s) 471, 765
BspCNI CTCAG 4 cut(s) 573, 1095, 1124, 1269
BspFNI CGCG 1 cut(s) 389
BspHI TCATGA 1 cut(s) 1098
BspLI GGNNCC 3 cut(s) 308, 412, 993
BspMAI CTGCAG 2 cut(s) 481, 1158
BspPI GGATC 1 cut(s) 76
BspQI GCTCTTC 1 cut(s) 1067
BspT107I GGYRCC 1 cut(s) 306
BspTNI GGTCTC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 849
BsrI ACTGG 5 cut(s) 85, 149, 357, 454, 980
BssECI CCNNGG 6 cut(s) 163, 310, 387, 414, 498, 874
BssMI GATC 3 cut(s) 81, 641, 925
BssNI GRCGYC 1 cut(s) 444
BssT1I CCWWGG 2 cut(s) 163, 414
Bst2UI CCWGG 3 cut(s) 174, 311, 875
Bst4CI ACNGT 3 cut(s) 262, 637, 709
Bst6I CTCTTC 2 cut(s) 1050, 1067
BstACI GRCGYC 1 cut(s) 444
BstBAI YACGTR 1 cut(s) 1216
BstC8I GCNNGC 2 cut(s) 469, 505
BstDEI CTNAG 5 cut(s) 581, 1082, 1111, 1256, 1323
BstDSI CCRYGG 3 cut(s) 387, 414, 498
BstF5I GGATG 4 cut(s) 56, 741, 827, 1228
BstFNI CGCG 1 cut(s) 389
BstH2I RGCGCY 1 cut(s) 423
BstHHI GCGC 2 cut(s) 422, 512
BstKTI GATC 3 cut(s) 84, 644, 928
BstMAI GTCTC 2 cut(s) 157, 347
BstMBI GATC 3 cut(s) 81, 641, 925
BstMWI GCNNNNNNNGC 4 cut(s) 419, 428, 464, 509
BstNI CCWGG 3 cut(s) 174, 311, 875
BstNSI RCATGY 1 cut(s) 1149
BstSCI CCNGG 5 cut(s) 89, 172, 270, 309, 873
BstSFI CTRYAG 3 cut(s) 393, 477, 1154
BstSLI GKGCMC 1 cut(s) 41
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 6 cut(s) 445, 491, 494, 519, 542, 841
BstV2I GAAGAC 2 cut(s) 543, 1132
BstXI CCANNNNNNTGG 1 cut(s) 971
BsuI GTATCC 1 cut(s) 196
BsuRI GGCC 2 cut(s) 471, 765
BtgI CCRYGG 3 cut(s) 387, 414, 498
BtgZI GCGATG 1 cut(s) 1185
BtsCI GGATG 4 cut(s) 56, 741, 827, 1228
BtsIMutI CAGTG 3 cut(s) 364, 447, 1090
Cac8I GCNNGC 2 cut(s) 469, 505
CaiI CAGNNNCTG 2 cut(s) 260, 572
CciI TCATGA 1 cut(s) 1098
CfoI GCGC 2 cut(s) 422, 512
Cfr13I GGNCC 2 cut(s) 452, 763
Cfr42I CCGCGG 1 cut(s) 390
CseI GACGC 1 cut(s) 433
Csp6I GTAC 3 cut(s) 307, 932, 1213
CviAII CATG 3 cut(s) 415, 1099, 1146
CviQI GTAC 3 cut(s) 307, 932, 1213
DdeI CTNAG 5 cut(s) 581, 1082, 1111, 1256, 1323
DpnI GATC 3 cut(s) 83, 643, 927
DpnII GATC 3 cut(s) 81, 641, 925
DraIII CACNNNGTG 1 cut(s) 1210
Eam1104I CTCTTC 2 cut(s) 1050, 1067
EarI CTCTTC 2 cut(s) 1050, 1067
EciI GGCGGA 1 cut(s) 319
Ecl136II GAGCTC 1 cut(s) 1060
Eco130I CCWWGG 2 cut(s) 163, 414
Eco147I AGGCCT 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 1062
Eco31I GGTCTC 1 cut(s) 347
Eco32I GATATC 1 cut(s) 1033
Eco47I GGWCC 1 cut(s) 452
Eco53kI GAGCTC 1 cut(s) 1060
Eco57I CTGAAG 2 cut(s) 237, 555
EcoICRI GAGCTC 1 cut(s) 1060
EcoRII CCWGG 3 cut(s) 172, 309, 873
EcoRV GATATC 1 cut(s) 1033
EcoT14I CCWWGG 2 cut(s) 163, 414
EcoT38I GRGCYC 1 cut(s) 1062
ErhI CCWWGG 2 cut(s) 163, 414
FaeI CATG 3 cut(s) 418, 1102, 1149
FaiI YATR 8 cut(s) 416, 605, 732, 890, 1025, 1100, 1147, 1280
FaqI GGGAC 5 cut(s) 73, 93, 700, 891, 1106
FatI CATG 3 cut(s) 414, 1098, 1145
FblI GTMKAC 2 cut(s) 1160, 1308
Fnu4HI GCNGC 7 cut(s) 390, 459, 480, 483, 508, 531, 855
FokI GGATG 4 cut(s) 43, 748, 834, 1235
FriOI GRGCYC 1 cut(s) 1062
Fsp4HI GCNGC 7 cut(s) 390, 459, 480, 483, 508, 531, 855
GlaI GCGC 2 cut(s) 421, 511
GluI GCNGC 7 cut(s) 390, 459, 480, 483, 508, 531, 855
GsaI CCCAGC 1 cut(s) 667
GsuI CTGGAG 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 423
HaeIII GGCC 2 cut(s) 471, 765
HapII CCGG 3 cut(s) 91, 272, 680
HgaI GACGC 1 cut(s) 433
HhaI GCGC 2 cut(s) 422, 512
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 3 cut(s) 418, 1102, 1149
Hin6I GCGC 2 cut(s) 420, 510
HinP1I GCGC 2 cut(s) 420, 510
HincII GTYRAC 2 cut(s) 705, 1161
HindII GTYRAC 2 cut(s) 705, 1161
HinfI GANTC 8 cut(s) 193, 229, 315, 557, 668, 1038, 1078, 1162
HpaII CCGG 3 cut(s) 91, 272, 680
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 5 cut(s) 705, 1161, 1204, 1213, 1309
Hpy188I TCNGA 5 cut(s) 871, 1037, 1050, 1114, 1259
Hpy188III TCNNGA 5 cut(s) 625, 815, 946, 1075, 1099
Hpy8I GTNNAC 5 cut(s) 705, 1161, 1204, 1213, 1309
HpyAV CCTTC 4 cut(s) 28, 381, 631, 1223
HpyCH4III ACNGT 3 cut(s) 262, 637, 709
HpyCH4IV ACGT 1 cut(s) 1215
HpyF10VI GCNNNNNNNGC 4 cut(s) 419, 428, 464, 509
HpyF3I CTNAG 5 cut(s) 581, 1082, 1111, 1256, 1323
HpySE526I ACGT 1 cut(s) 1215
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 3 cut(s) 418, 1102, 1149
HspAI GCGC 2 cut(s) 420, 510
KpnI GGTACC 1 cut(s) 310
KspI CCGCGG 1 cut(s) 390
Kzo9I GATC 3 cut(s) 81, 641, 925
LguI GCTCTTC 1 cut(s) 1067
LmnI GCTCC 4 cut(s) 410, 428, 991, 1327
Lsp1109I GCAGC 6 cut(s) 445, 491, 494, 519, 542, 841
LweI GCATC 4 cut(s) 55, 271, 559, 812
MaeII ACGT 1 cut(s) 1215
MaeIII GTNAC 1 cut(s) 445
MalI GATC 3 cut(s) 83, 643, 927
MboI GATC 3 cut(s) 81, 641, 925
MfeI CAATTG 1 cut(s) 210
MhlI GDGCHC 2 cut(s) 41, 1062
MluCI AATT 8 cut(s) 51, 98, 121, 210, 758, 966, 1069, 1140
MlyI GAGTC 3 cut(s) 223, 677, 1156
MmeI TCCRAC 2 cut(s) 330, 496
MnlI CCTC 9 cut(s) 22, 170, 291, 297, 541, 811, 895, 904, 1332
MseI TTAA 2 cut(s) 125, 777
MslI CAYNNNNRTG 1 cut(s) 1302
MspA1I CMGCKG 2 cut(s) 389, 533
MspI CCGG 3 cut(s) 91, 272, 680
MspR9I CCNGG 5 cut(s) 91, 174, 272, 311, 875
MunI CAATTG 1 cut(s) 210
MvaI CCWGG 3 cut(s) 174, 311, 875
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 4 cut(s) 419, 428, 464, 509
NciI CCSGG 2 cut(s) 91, 272
NcoI CCATGG 1 cut(s) 414
NdeII GATC 3 cut(s) 81, 641, 925
NlaIII CATG 3 cut(s) 418, 1102, 1149
NlaIV GGNNCC 3 cut(s) 308, 412, 993
NmeAIII GCCGAG 1 cut(s) 1146
NmuCI GTSAC 1 cut(s) 445
NspI RCATGY 1 cut(s) 1149
PagI TCATGA 1 cut(s) 1098
PceI AGGCCT 1 cut(s) 471
PciSI GCTCTTC 1 cut(s) 1067
PfeI GAWTC 5 cut(s) 193, 315, 557, 1038, 1078
PflFI GACNNNGTC 1 cut(s) 232
PfoI TCCNGGA 2 cut(s) 89, 172
PkrI GCNGC 7 cut(s) 391, 460, 481, 484, 509, 532, 856
PleI GAGTC 3 cut(s) 223, 676, 1156
PpsI GAGTC 3 cut(s) 223, 676, 1156
Ppu21I YACGTR 1 cut(s) 1216
Psp124BI GAGCTC 1 cut(s) 1062
Psp6I CCWGG 3 cut(s) 172, 309, 873
PspFI CCCAGC 1 cut(s) 663
PspGI CCWGG 3 cut(s) 172, 309, 873
PspN4I GGNNCC 3 cut(s) 308, 412, 993
PspPI GGNCC 2 cut(s) 452, 763
PstI CTGCAG 2 cut(s) 481, 1158
PstNI CAGNNNCTG 2 cut(s) 260, 572
PsyI GACNNNGTC 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 3 cut(s) 308, 933, 1214
RsaNI GTAC 3 cut(s) 307, 932, 1213
RseI CAYNNNNRTG 1 cut(s) 1302
SacI GAGCTC 1 cut(s) 1062
SacII CCGCGG 1 cut(s) 390
SalI GTCGAC 1 cut(s) 1159
SapI GCTCTTC 1 cut(s) 1067
SaqAI TTAA 2 cut(s) 125, 777
SatI GCNGC 7 cut(s) 390, 459, 480, 483, 508, 531, 855
Sau3AI GATC 3 cut(s) 81, 641, 925
Sau96I GGNCC 2 cut(s) 452, 763
SchI GAGTC 3 cut(s) 223, 677, 1156
ScrFI CCNGG 5 cut(s) 91, 174, 272, 311, 875
SduI GDGCHC 2 cut(s) 41, 1062
SfaNI GCATC 4 cut(s) 55, 271, 559, 812
SfcI CTRYAG 3 cut(s) 393, 477, 1154
Sfr303I CCGCGG 1 cut(s) 390
SgrBI CCGCGG 1 cut(s) 390
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 1302
SmlI CTYRAG 1 cut(s) 815
SmoI CTYRAG 1 cut(s) 815
Sse9I AATT 8 cut(s) 51, 98, 121, 210, 758, 966, 1069, 1140
SseBI AGGCCT 1 cut(s) 471
SsiI CCGC 5 cut(s) 200, 330, 387, 389, 402
SspI AATATT 1 cut(s) 1134
SstI GAGCTC 1 cut(s) 1062
StuI AGGCCT 1 cut(s) 471
StyD4I CCNGG 5 cut(s) 89, 172, 270, 309, 873
StyI CCWWGG 2 cut(s) 163, 414
TaaI ACNGT 3 cut(s) 262, 637, 709
TaiI ACGT 1 cut(s) 1218
TaqI TCGA 5 cut(s) 75, 594, 843, 921, 1160
TasI AATT 8 cut(s) 51, 98, 121, 210, 758, 966, 1069, 1140
TauI GCSGC 1 cut(s) 392
TfiI GAWTC 5 cut(s) 193, 315, 557, 1038, 1078
Tru1I TTAA 2 cut(s) 125, 777
Tru9I TTAA 2 cut(s) 125, 777
TscAI CASTG 3 cut(s) 364, 454, 1090
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 6 cut(s) 458, 479, 482, 507, 530, 854
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 7 cut(s) 45, 630, 775, 1087, 1115, 1242, 1267
TspRI CASTG 3 cut(s) 364, 454, 1090
Tth111I GACNNNGTC 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 452
XapI RAATTY 2 cut(s) 51, 121
XceI RCATGY 1 cut(s) 1149
XcmI CCANNNNNNNNNTGG 2 cut(s) 170, 871
XmiI GTMKAC 2 cut(s) 1160, 1308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.