Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003883

Physical Location & Seq

Genomic Coordinates Reverse (-)

4463661 .. 4466246

Gene Structure 2586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06740.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGCGCTATTGGAGCAGTTGCATTGGGCGTAACTGGTCCTGCTGCTCTTGCAGGCCTAACTGCAGCAGCAGTTTGCTCTGCCATGGCTGGCAGCGCAGTTGGAAAAATAGGTGCGGCTGAAGACAAAGGAGAGGGCAGAGATTCTCCCACAGATGCTGATAAACTGAGCGAAGAACTCGACAGCGTTATACTACAAGATGAACCCTTCAAGACAACCACAGTAAGATCAATACTGAAATCCTTTCGCTGGGAGTCATTTCTTCCGGTAGGGACAGATAGTTCAATGTTGACCGTCTTGCTACTACTCTCAAAATATAGGATGAGAAATGTACCTGTAATAGAAGTGGGGCAACCCGATATTAAGAACTTCATCACACAGTCAGCAGTTGTTCAGGGTCTTGAGGGATGCAAAGGAATGGAATGGTTCGACTGCATTGCTGCAAAGTCCATCTCTGACCTGGGACTTCCTTTTATGTCCTCCAATGAGGTTATCAGCACCAATGTCGATGATCCGGTACTTGAAGCGTTCAAGAAAATGAGAGAGAACCAAATTGGTGGGCTTCCAGTTGTGCAGGGGCCAAAGAAGAAGATAGTTGGTAATGTCAGCATAAGTGATATCAGATTCTCTCTTCTGAAAGCAGAGCTCTTCAACAATTTCAGGAATCTCAGTGTTAGGGACTTCATGAACACAATCTCAGAAAGCCAGGGAAGACAAATATTACCAATTACATGCAATCTGCAGTCGACTCTCGGCGATGTGATTGAAACTCTTGCTTCTAAATCGGTTCACAGAGTGTATGTGGTGGATGATGAAGGAGAAGTTGTTGGTGTGATTACACTCAGAGATGTGATTTCTTGCTTCATTTTTGAACCACCCAATCACTTTGATGTCTACTTGGGGTTTTACCTCGTCCCCTACAGGAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

311

Amino Acids

33.65

Weight (kDa)

5.06

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69800 AT1G69800 AT1G69800
fragaria_vesca	FvH4_4g31760 FvH4_4g31760 FvH4_4g31760 FvH4_4g31760 FvH4_4g31780 FvH4_4g31780
malus_domestica	MD13G1077700.v1.1 MD13G1077800.v1.1 MD16G1077600.v1.1
prunus_persica	Prupe.1G269400_v2.0.a1
pyrus_communis	pycom13g06740 pycom16g06700
rosa_chinensis	RchiOBHm_Chr4g0440361 RchiOBHm_Chr4g0440371
rosa_laevigata	RLG00000006187 RLG00000006188
rosa_multiflora	Rmu_sc0001685.1_g000046
rosa_roxburghii	Rroxscaffold_5G00381240 Rroxscaffold_5G00381250
rosa_rugosa	Rorug04G0325800 Rorug04G0325800
rosa_samantha	Rh4AG376900 Rh4AG377000 Rh4BG389900 Rh4BG390000 Rh4CG404700 Rh4CG404800 Rh4DG383600 Rh4DG383700
rosa_wichuraiana	Rw4G032270 Rw4G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	746, 894
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	1 cut(s)	506
AcuI	CTGAAG	1 cut(s)	141
AdeI	CACNNNGTG	1 cut(s)	796
AfaI	GTAC	2 cut(s)	333, 519
AfiI	CCNNNNNNNGG	2 cut(s)	249, 924
AgsI	TTSAA	7 cut(s)	211, 285, 524, 532, 652, 767, 872
AjnI	CCWGG	2 cut(s)	459, 705
AloI	GAACNNNNNNTCC	2 cut(s)	265, 297
AluBI	AGCT	1 cut(s)	646
AluI	AGCT	1 cut(s)	646
Alw21I	GWGCWC	1 cut(s)	648
AlwI	GGATC	1 cut(s)	506
AlwNI	CAGNNNCTG	1 cut(s)	158
AoxI	GGCC	2 cut(s)	55, 578
ApeKI	GCWGC	5 cut(s)	44, 65, 68, 93, 440
AspLEI	GCGC	2 cut(s)	8, 98
AspS9I	GGNCC	2 cut(s)	38, 578
AvaII	GGWCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	648
BbsI	GAAGAC	2 cut(s)	129, 718
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	5 cut(s)	31, 77, 80, 105, 427
BccI	CCATC	1 cut(s)	458
BcgI	CGANNNNNNTGC	4 cut(s)	419, 453, 487, 521
BciT130I	CCWGG	2 cut(s)	461, 707
BfmI	CTRYAG	3 cut(s)	63, 740, 919
BfoI	RGCGCY	1 cut(s)	9
BisI	GCNGC	6 cut(s)	45, 66, 69, 94, 117, 441
BlsI	GCNGC	6 cut(s)	46, 67, 70, 95, 118, 442
Bme1390I	CCNGG	2 cut(s)	461, 707
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	38, 578
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	2 cut(s)	461, 707
BmsI	GCATC	2 cut(s)	145, 398
BpiI	GAAGAC	2 cut(s)	129, 718
BpuEI	CTTGAG	1 cut(s)	422
BsaJI	CCNNGG	3 cut(s)	84, 460, 706
BsaWI	WCCGGW	2 cut(s)	265, 514
BsaXI	ACNNNNNCTCC	2 cut(s)	810, 840
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 924
Bse1I	ACTGG	2 cut(s)	40, 566
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	2 cut(s)	461, 707
BseDI	CCNNGG	3 cut(s)	84, 460, 706
BseGI	GGATG	3 cut(s)	327, 413, 814
BseLI	CCNNNNNNNGG	2 cut(s)	249, 924
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	4 cut(s)	158, 682, 711, 856
BseNI	ACTGG	2 cut(s)	40, 566
BseXI	GCAGC	5 cut(s)	31, 77, 80, 105, 427
BseYI	CCCAGC	1 cut(s)	249
BsgI	GTGCAG	1 cut(s)	593
BshFI	GGCC	2 cut(s)	57, 580
BsiHKAI	GWGCWC	1 cut(s)	648
BsiSI	CCGG	2 cut(s)	266, 515
BslFI	GGGAC	4 cut(s)	286, 477, 692, 899
BslI	CCNNNNNNNGG	2 cut(s)	249, 924
BsmFI	GGGAC	4 cut(s)	286, 477, 692, 899
BsnI	GGCC	2 cut(s)	57, 580
Bsp1286I	GDGCHC	1 cut(s)	648
Bsp143I	GATC	2 cut(s)	227, 511
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	2 cut(s)	57, 580
BspCNI	CTCAG	4 cut(s)	159, 681, 710, 855
BspHI	TCATGA	1 cut(s)	684
BspLI	GGNNCC	1 cut(s)	579
BspMAI	CTGCAG	2 cut(s)	67, 744
BspPI	GGATC	1 cut(s)	506
BspQI	GCTCTTC	1 cut(s)	653
BsrDI	GCAATG	1 cut(s)	435
BsrI	ACTGG	2 cut(s)	40, 566
BssECI	CCNNGG	3 cut(s)	84, 460, 706
BssMI	GATC	2 cut(s)	227, 511
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	2 cut(s)	461, 707
Bst4CI	ACNGT	3 cut(s)	223, 295, 381
Bst6I	CTCTTC	2 cut(s)	636, 653
BstC8I	GCNNGC	2 cut(s)	55, 91
BstDEI	CTNAG	4 cut(s)	167, 668, 697, 842
BstDSI	CCRYGG	1 cut(s)	84
BstENI	CCTNNNNNAGG	1 cut(s)	922
BstF5I	GGATG	3 cut(s)	327, 413, 814
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	8, 98
BstKTI	GATC	2 cut(s)	230, 514
BstMBI	GATC	2 cut(s)	227, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 50, 95
BstNI	CCWGG	2 cut(s)	461, 707
BstNSI	RCATGY	1 cut(s)	735
BstSCI	CCNGG	2 cut(s)	459, 705
BstSFI	CTRYAG	3 cut(s)	63, 740, 919
BstV1I	GCAGC	5 cut(s)	31, 77, 80, 105, 427
BstV2I	GAAGAC	2 cut(s)	129, 718
BstXI	CCANNNNNNTGG	1 cut(s)	557
BsuRI	GGCC	2 cut(s)	57, 580
BtgI	CCRYGG	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	771
BtsCI	GGATG	3 cut(s)	327, 413, 814
BtsIMutI	CAGTG	1 cut(s)	676
Cac8I	GCNNGC	2 cut(s)	55, 91
CaiI	CAGNNNCTG	1 cut(s)	158
CciI	TCATGA	1 cut(s)	684
CfoI	GCGC	2 cut(s)	8, 98
Cfr13I	GGNCC	2 cut(s)	38, 578
Csp6I	GTAC	2 cut(s)	332, 518
CviAII	CATG	3 cut(s)	85, 685, 732
CviJI	RGCY	7 cut(s)	57, 89, 119, 562, 580, 646, 705
CviKI_1	RGCY	7 cut(s)	57, 89, 119, 562, 580, 646, 705
CviQI	GTAC	2 cut(s)	332, 518
DdeI	CTNAG	4 cut(s)	167, 668, 697, 842
DpnI	GATC	2 cut(s)	229, 513
DpnII	GATC	2 cut(s)	227, 511
DraIII	CACNNNGTG	1 cut(s)	796
Eam1104I	CTCTTC	2 cut(s)	636, 653
EarI	CTCTTC	2 cut(s)	636, 653
Ecl136II	GAGCTC	1 cut(s)	646
Eco130I	CCWWGG	1 cut(s)	84
Eco147I	AGGCCT	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	648
Eco32I	GATATC	1 cut(s)	619
Eco47I	GGWCC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	646
Eco57I	CTGAAG	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	646
EcoNI	CCTNNNNNAGG	1 cut(s)	922
EcoRII	CCWGG	2 cut(s)	459, 705
EcoRV	GATATC	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	3 cut(s)	88, 688, 735
FaiI	YATR	8 cut(s)	86, 191, 318, 476, 611, 686, 733, 801
FaqI	GGGAC	4 cut(s)	286, 477, 692, 899
FatI	CATG	3 cut(s)	84, 684, 731
FblI	GTMKAC	2 cut(s)	746, 894
Fnu4HI	GCNGC	6 cut(s)	45, 66, 69, 94, 117, 441
FokI	GGATG	3 cut(s)	334, 420, 821
FriOI	GRGCYC	1 cut(s)	648
Fsp4HI	GCNGC	6 cut(s)	45, 66, 69, 94, 117, 441
GlaI	GCGC	2 cut(s)	7, 97
GluI	GCNGC	6 cut(s)	45, 66, 69, 94, 117, 441
GsaI	CCCAGC	1 cut(s)	253
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	57, 580
HapII	CCGG	2 cut(s)	266, 515
HhaI	GCGC	2 cut(s)	8, 98
Hin1II	CATG	3 cut(s)	88, 688, 735
Hin6I	GCGC	2 cut(s)	6, 96
HinP1I	GCGC	2 cut(s)	6, 96
HincII	GTYRAC	2 cut(s)	291, 747
HindII	GTYRAC	2 cut(s)	291, 747
HinfI	GANTC	5 cut(s)	143, 254, 624, 664, 748
HpaII	CCGG	2 cut(s)	266, 515
Hpy166II	GTNNAC	4 cut(s)	291, 747, 790, 895
Hpy188I	TCNGA	5 cut(s)	457, 623, 636, 700, 845
Hpy188III	TCNNGA	5 cut(s)	211, 401, 532, 661, 685
Hpy8I	GTNNAC	4 cut(s)	291, 747, 790, 895
HpyAV	CCTTC	2 cut(s)	217, 809
HpyCH4III	ACNGT	3 cut(s)	223, 295, 381
HpyCH4V	TGCA	9 cut(s)	23, 53, 65, 411, 435, 443, 574, 735, 742
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 50, 95
HpyF3I	CTNAG	4 cut(s)	167, 668, 697, 842
Hsp92II	CATG	3 cut(s)	88, 688, 735
HspAI	GCGC	2 cut(s)	6, 96
Kzo9I	GATC	2 cut(s)	227, 511
LguI	GCTCTTC	1 cut(s)	653
LmnI	GCTCC	1 cut(s)	14
Lsp1109I	GCAGC	5 cut(s)	31, 77, 80, 105, 427
LweI	GCATC	2 cut(s)	145, 398
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	2 cut(s)	229, 513
MboI	GATC	2 cut(s)	227, 511
MboII	GAAGA	8 cut(s)	134, 185, 254, 598, 601, 623, 640, 723
MhlI	GDGCHC	1 cut(s)	648
MluCI	AATT	3 cut(s)	552, 655, 726
MlyI	GAGTC	2 cut(s)	263, 742
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	6 cut(s)	127, 397, 481, 490, 918, 920
MseI	TTAA	2 cut(s)	363, 931
MslI	CAYNNNNRTG	1 cut(s)	888
MspI	CCGG	2 cut(s)	266, 515
MspR9I	CCNGG	2 cut(s)	461, 707
MvaI	CCWGG	2 cut(s)	461, 707
MwoI	GCNNNNNNNGC	3 cut(s)	14, 50, 95
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	2 cut(s)	227, 511
NlaIII	CATG	3 cut(s)	88, 688, 735
NlaIV	GGNNCC	1 cut(s)	579
NmeAIII	GCCGAG	1 cut(s)	732
NspI	RCATGY	1 cut(s)	735
PagI	TCATGA	1 cut(s)	684
PceI	AGGCCT	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	653
PfeI	GAWTC	3 cut(s)	143, 624, 664
PkrI	GCNGC	6 cut(s)	46, 67, 70, 95, 118, 442
PleI	GAGTC	2 cut(s)	262, 742
PpsI	GAGTC	2 cut(s)	262, 742
Psp124BI	GAGCTC	1 cut(s)	648
Psp6I	CCWGG	2 cut(s)	459, 705
PspFI	CCCAGC	1 cut(s)	249
PspGI	CCWGG	2 cut(s)	459, 705
PspN4I	GGNNCC	1 cut(s)	579
PspPI	GGNCC	2 cut(s)	38, 578
PstI	CTGCAG	2 cut(s)	67, 744
PstNI	CAGNNNCTG	1 cut(s)	158
RsaI	GTAC	2 cut(s)	333, 519
RsaNI	GTAC	2 cut(s)	332, 518
RseI	CAYNNNNRTG	1 cut(s)	888
SacI	GAGCTC	1 cut(s)	648
SalI	GTCGAC	1 cut(s)	745
SapI	GCTCTTC	1 cut(s)	653
SaqAI	TTAA	2 cut(s)	363, 931
SatI	GCNGC	6 cut(s)	45, 66, 69, 94, 117, 441
Sau3AI	GATC	2 cut(s)	227, 511
Sau96I	GGNCC	2 cut(s)	38, 578
SchI	GAGTC	2 cut(s)	263, 742
ScrFI	CCNGG	2 cut(s)	461, 707
SduI	GDGCHC	1 cut(s)	648
SetI	ASST	7 cut(s)	115, 337, 462, 492, 648, 912, 929
SfaNI	GCATC	2 cut(s)	145, 398
SfcI	CTRYAG	3 cut(s)	63, 740, 919
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	888
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	3 cut(s)	552, 655, 726
SseBI	AGGCCT	1 cut(s)	57
SsiI	CCGC	1 cut(s)	116
SspI	AATATT	1 cut(s)	720
SstI	GAGCTC	1 cut(s)	648
StuI	AGGCCT	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	459, 705
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	3 cut(s)	223, 295, 381
TaqI	TCGA	4 cut(s)	180, 429, 507, 746
TasI	AATT	3 cut(s)	552, 655, 726
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	3 cut(s)	143, 624, 664
Tru1I	TTAA	2 cut(s)	363, 931
Tru9I	TTAA	2 cut(s)	363, 931
TscAI	CASTG	1 cut(s)	676
TseI	GCWGC	5 cut(s)	44, 65, 68, 93, 440
TspDTI	ATGAA	6 cut(s)	216, 361, 673, 701, 828, 853
TspRI	CASTG	1 cut(s)	676
VpaK11BI	GGWCC	1 cut(s)	38
XagI	CCTNNNNNAGG	1 cut(s)	922
XceI	RCATGY	1 cut(s)	735
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457
XmiI	GTMKAC	2 cut(s)	746, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.