Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003883

Physical Location & Seq

Genomic Coordinates Reverse (-)

68382689 .. 68385525

Gene Structure 2837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG376900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGCACAACCACAAGAAGCTAAGGGAAGTTCTAATATTTCAAGCTATGATTCCTACTTCAAGACAGTACAGGCAAGGAAGAAATTACCACATTCGCTACAAGAGGTTTTAACAACTGCATTTGCAAAAATCCCAGTTTCCTCTTTTCCAGGAGTTCCTGGAGGCAAAGTAGTTGAGATTCCAGCAGATACATCTATCGGCGATGCAGTCAAGATTCTGTCTGAATGCAACATTTTGTCAGCTCCTGTGAGAAACCCAGCTGCAGAAACCAGCTCAGAATGGAGAGATAGTTACCTAGGAATCATAGATTACTCTGCCATTATTCTTTGGGTGTTGGAGAGTGCAGAACTAGCTGCAGTTGCTCTCTCAGCTACTTCAGCAACAGCTGCTGGAGTTGGTGCAGGAGCTGTTGGCGCAATTGGAGCAGTTGCATTGGGTGTGACCGGTCCTGCTGCAGTTGCAGGGTTAACCGCTGCTGCAGTTGGAGCTGCAGTGGCTGGTGGAGTGGCTGCGGACAAAGGGATGCGCAAAGATGCTCCCACAGCTGCTGATGAATTGGGCCAAGACTTTTACAAAACTATACTGCAAGATGAACCTTTCAAGTCAACCACAGTAAGGTCAATACTTAAATCCTTCCGCTGGGCACCTTTCCTTCCAGTAGCAACCGATAGTTCTATGTTGAGCGTCTTGCTACTACTCTCAAAATATAGGCTCAGGAATGTACCTGTGATAGAACCTGGCCAAGCTACTATCAAGAACTACATTACTCAATCAGCAATTGTTCATGGTCTTGAGCGATGCAAAGGAAGGGATTGGTTTGACTGCATTGCCGCAAAGCCTATATCTGATCTGGGACTTCCTTTTATGTCCTCTGATGAGGTTATTAGTGTCCTGAGCGATGACTTGATCCTGGAAGCTTTCAAGAAGATGAGAGATAATCAAATTGGCGGTCTTCCAGTTGTAGAAGGGACAAAGAAGCAGATAGTCGGTAATGTCAGCATAAGAGATATCAGACACTTGCTGCTCAAACCCGAGCTCTTCTCCAATTTCAGGAAGCTCACTGTCAGGGACTTCATGAGCACCATCTCGACAAGCCAGAATATTGGAAAAGCCGTCCCAGCAATTACATGCAATGTCGAGTCCACTCTTGGCAATGTGATTGAAACTCTTGCTTCCAAGTCCGTTCATAGAATCTACGTGGCGGGGCAGGAAGGTGAAGTTGTTGGTGTCATTACTCTCAGAGATGTGATTTCTTGCTTCATTTATGAACCCCCCAACCACTTTGATGACTGCATGGGGTCTGCGTTGAAGGAGATGCTGAATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

442

Amino Acids

46.97

Weight (kDa)

5.87

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	291 - 342	1.3e-09	CBS domain
CBS	PF00571	373 - 419	9.9e-08	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69800 AT1G69800 AT1G69800
fragaria_vesca	FvH4_4g31760 FvH4_4g31760 FvH4_4g31760 FvH4_4g31760 FvH4_4g31780 FvH4_4g31780
malus_domestica	MD13G1077700.v1.1 MD13G1077800.v1.1 MD16G1077600.v1.1
prunus_persica	Prupe.1G269400_v2.0.a1
pyrus_communis	pycom13g06740 pycom16g06700
rosa_chinensis	RchiOBHm_Chr4g0440361 RchiOBHm_Chr4g0440371
rosa_laevigata	RLG00000006187 RLG00000006188
rosa_multiflora	Rmu_sc0001685.1_g000046
rosa_roxburghii	Rroxscaffold_5G00381240 Rroxscaffold_5G00381250
rosa_rugosa	Rorug04G0325800 Rorug04G0325800
rosa_samantha	Rh4AG376900 Rh4AG377000 Rh4BG389900 Rh4BG390000 Rh4CG404700 Rh4CG404800 Rh4DG383600 Rh4DG383700
rosa_wichuraiana	Rw4G032270 Rw4G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	643
AciI	CCGC	6 cut(s)	471, 512, 637, 831, 948, 1202
AclWI	GGATC	1 cut(s)	901
AcoI	YGGCCR	1 cut(s)	739
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	2 cut(s)	69, 723
AfiI	CCNNNNNNNGG	3 cut(s)	615, 639, 1050
AgeI	ACCGGT	1 cut(s)	443
AgsI	TTSAA	6 cut(s)	42, 61, 601, 922, 1163, 1309
AjnI	CCWGG	4 cut(s)	148, 157, 736, 909
Alw21I	GWGCWC	2 cut(s)	1038, 1082
AlwI	GGATC	1 cut(s)	901
AlwNI	CAGNNNCTG	5 cut(s)	245, 389, 407, 497, 548
Ama87I	CYCGRG	1 cut(s)	1031
AoxI	GGCC	2 cut(s)	559, 739
ArsI	GACNNNNNNTTYG	2 cut(s)	934, 966
AsiGI	ACCGGT	1 cut(s)	443
AspA2I	CCTAGG	1 cut(s)	295
AspLEI	GCGC	2 cut(s)	416, 528
AspS9I	GGNCC	2 cut(s)	446, 559
AsuHPI	GGTGA	1 cut(s)	1226
AvaI	CYCGRG	1 cut(s)	1031
AvaII	GGWCC	1 cut(s)	446
AvrII	CCTAGG	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	646
BalI	TGGCCA	1 cut(s)	741
BanI	GGYRCC	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	1038
BbsI	GAAGAC	1 cut(s)	944
Bbv12I	GWGCWC	2 cut(s)	1038, 1082
BccI	CCATC	1 cut(s)	1091
BceAI	ACGGC	1 cut(s)	1097
BciT130I	CCWGG	4 cut(s)	150, 159, 738, 911
BfaI	CTAG	2 cut(s)	296, 350
BfmI	CTRYAG	5 cut(s)	261, 354, 453, 477, 489
BlnI	CCTAGG	1 cut(s)	295
Bme1390I	CCNGG	4 cut(s)	150, 159, 738, 911
Bme18I	GGWCC	1 cut(s)	446
BmeT110I	CYCGRG	1 cut(s)	1031
BmgT120I	GGNCC	2 cut(s)	446, 559
BmiI	GGNNCC	1 cut(s)	645
BmrFI	CCNGG	4 cut(s)	150, 159, 738, 911
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	5 cut(s)	193, 513, 523, 788, 1305
BmuI	ACTGGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	944
BplI	GAGNNNNNCTC	2 cut(s)	1025, 1057
BpmI	CTGGAG	2 cut(s)	180, 411
Bpu10I	CCTNAGC	3 cut(s)	21, 713, 893
BpuEI	CTTGAG	1 cut(s)	812
BsaAI	YACGTR	1 cut(s)	1198
BsaJI	CCNNGG	1 cut(s)	295
BsaWI	WCCGGW	1 cut(s)	443
BsaXI	ACNNNNNCTCC	6 cut(s)	153, 183, 274, 304, 477, 507
Bsc4I	CCNNNNNNNGG	3 cut(s)	615, 639, 1050
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	3 cut(s)	134, 656, 956
Bse3DI	GCAATG	3 cut(s)	825, 1138, 1159
BseBI	CCWGG	4 cut(s)	150, 159, 738, 911
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	528
BseLI	CCNNNNNNNGG	3 cut(s)	615, 639, 1050
BseMI	GCAATG	3 cut(s)	825, 1138, 1159
BseMII	CTCAG	5 cut(s)	288, 381, 727, 884, 1252
BseNI	ACTGG	3 cut(s)	134, 656, 956
BseSI	GKGCMC	1 cut(s)	646
BseYI	CCCAGC	3 cut(s)	256, 639, 1117
BsgI	GTGCAG	2 cut(s)	363, 420
BshFI	GGCC	2 cut(s)	561, 741
BshNI	GGYRCC	1 cut(s)	643
BshTI	ACCGGT	1 cut(s)	443
BsiHKAI	GWGCWC	2 cut(s)	1038, 1082
BsiHKCI	CYCGRG	1 cut(s)	1031
BsiSI	CCGG	1 cut(s)	444
BslFI	GGGAC	4 cut(s)	867, 982, 1082, 1100
BslI	CCNNNNNNNGG	3 cut(s)	615, 639, 1050
BsmFI	GGGAC	4 cut(s)	867, 982, 1082, 1100
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	561, 741
BsoBI	CYCGRG	1 cut(s)	1031
Bsp1286I	GDGCHC	3 cut(s)	646, 1038, 1082
Bsp143I	GATC	2 cut(s)	847, 906
BspACI	CCGC	6 cut(s)	471, 512, 637, 831, 948, 1202
BspANI	GGCC	2 cut(s)	561, 741
BspCNI	CTCAG	5 cut(s)	287, 380, 726, 885, 1251
BspHI	TCATGA	1 cut(s)	1074
BspLI	GGNNCC	1 cut(s)	645
BspMAI	CTGCAG	5 cut(s)	265, 358, 457, 481, 493
BspPI	GGATC	1 cut(s)	901
BspQI	GCTCTTC	1 cut(s)	1043
BspT107I	GGYRCC	1 cut(s)	643
BsrDI	GCAATG	3 cut(s)	825, 1138, 1159
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	3 cut(s)	134, 656, 956
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	2 cut(s)	847, 906
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	4 cut(s)	150, 159, 738, 911
Bst4CI	ACNGT	3 cut(s)	67, 613, 1063
Bst6I	CTCTTC	1 cut(s)	1043
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstBAI	YACGTR	1 cut(s)	1198
BstDEI	CTNAG	6 cut(s)	21, 274, 367, 713, 893, 1238
BstF5I	GGATG	1 cut(s)	528
BstHHI	GCGC	2 cut(s)	416, 528
BstKTI	GATC	2 cut(s)	850, 909
BstMBI	GATC	2 cut(s)	847, 906
BstNI	CCWGG	4 cut(s)	150, 159, 738, 911
BstNSI	RCATGY	1 cut(s)	1131
BstSCI	CCNGG	4 cut(s)	148, 157, 736, 909
BstSFI	CTRYAG	5 cut(s)	261, 354, 453, 477, 489
BstSLI	GKGCMC	1 cut(s)	646
BstV2I	GAAGAC	1 cut(s)	944
BstXI	CCANNNNNNTGG	1 cut(s)	1103
BsuRI	GGCC	2 cut(s)	561, 741
BtgZI	GCGATG	3 cut(s)	216, 811, 912
BtsCI	GGATG	1 cut(s)	528
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	498, 1059
CaiI	CAGNNNCTG	5 cut(s)	245, 389, 407, 497, 548
CciI	TCATGA	1 cut(s)	1074
CfoI	GCGC	2 cut(s)	416, 528
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	2 cut(s)	446, 559
CseI	GACGC	1 cut(s)	673
Csp6I	GTAC	2 cut(s)	68, 722
CspAI	ACCGGT	1 cut(s)	443
CviAII	CATG	4 cut(s)	785, 1075, 1128, 1294
CviQI	GTAC	2 cut(s)	68, 722
DdeI	CTNAG	6 cut(s)	21, 274, 367, 713, 893, 1238
DpnI	GATC	2 cut(s)	849, 908
DpnII	GATC	2 cut(s)	847, 906
EaeI	YGGCCR	1 cut(s)	739
Eam1104I	CTCTTC	1 cut(s)	1043
EarI	CTCTTC	1 cut(s)	1043
Ecl136II	GAGCTC	1 cut(s)	1036
Eco130I	CCWWGG	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	1038
Eco32I	GATATC	1 cut(s)	1009
Eco47I	GGWCC	1 cut(s)	446
Eco53kI	GAGCTC	1 cut(s)	1036
Eco57I	CTGAAG	1 cut(s)	360
Eco88I	CYCGRG	1 cut(s)	1031
EcoICRI	GAGCTC	1 cut(s)	1036
EcoRII	CCWGG	4 cut(s)	148, 157, 736, 909
EcoRV	GATATC	1 cut(s)	1009
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	1038
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	4 cut(s)	788, 1078, 1131, 1297
FaqI	GGGAC	4 cut(s)	867, 982, 1082, 1100
FatI	CATG	4 cut(s)	784, 1074, 1127, 1293
FauI	CCCGC	1 cut(s)	1195
FokI	GGATG	1 cut(s)	535
FriOI	GRGCYC	1 cut(s)	1038
FspBI	CTAG	2 cut(s)	296, 350
FspI	TGCGCA	1 cut(s)	527
GlaI	GCGC	2 cut(s)	415, 527
GsaI	CCCAGC	3 cut(s)	260, 643, 1121
GsuI	CTGGAG	2 cut(s)	180, 411
HaeIII	GGCC	2 cut(s)	561, 741
HapII	CCGG	1 cut(s)	444
HgaI	GACGC	1 cut(s)	673
HhaI	GCGC	2 cut(s)	416, 528
Hin1II	CATG	4 cut(s)	788, 1078, 1131, 1297
Hin6I	GCGC	2 cut(s)	414, 526
HinP1I	GCGC	2 cut(s)	414, 526
HincII	GTYRAC	2 cut(s)	468, 606
HindII	GTYRAC	2 cut(s)	468, 606
HindIII	AAGCTT	1 cut(s)	915
HinfI	GANTC	6 cut(s)	50, 178, 214, 300, 1139, 1191
HpaI	GTTAAC	1 cut(s)	468
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	1 cut(s)	1226
Hpy166II	GTNNAC	3 cut(s)	468, 606, 1143
Hpy188I	TCNGA	6 cut(s)	223, 277, 847, 874, 1013, 1241
Hpy8I	GTNNAC	3 cut(s)	468, 606, 1143
HpyAV	CCTTC	6 cut(s)	643, 662, 801, 959, 1205, 1303
HpyCH4III	ACNGT	3 cut(s)	67, 613, 1063
HpyCH4IV	ACGT	1 cut(s)	1197
HpyF3I	CTNAG	6 cut(s)	21, 274, 367, 713, 893, 1238
HpySE526I	ACGT	1 cut(s)	1197
Hsp92II	CATG	4 cut(s)	788, 1078, 1131, 1297
HspAI	GCGC	2 cut(s)	414, 526
KspAI	GTTAAC	1 cut(s)	468
Kzo9I	GATC	2 cut(s)	847, 906
LguI	GCTCTTC	1 cut(s)	1043
LmnI	GCTCC	5 cut(s)	247, 404, 422, 485, 541
LweI	GCATC	5 cut(s)	193, 513, 523, 788, 1305
MaeI	CTAG	2 cut(s)	296, 350
MaeII	ACGT	1 cut(s)	1197
MaeIII	GTNAC	2 cut(s)	290, 439
MalI	GATC	2 cut(s)	849, 908
MboI	GATC	2 cut(s)	847, 906
MboII	GAAGA	4 cut(s)	91, 937, 944, 1030
MfeI	CAATTG	2 cut(s)	417, 777
MhlI	GDGCHC	3 cut(s)	646, 1038, 1082
MlsI	TGGCCA	1 cut(s)	741
MluCI	AATT	7 cut(s)	83, 417, 554, 777, 942, 1045, 1122
MluNI	TGGCCA	1 cut(s)	741
MlyI	GAGTC	1 cut(s)	1148
MmeI	TCCRAC	2 cut(s)	315, 463
MnlI	CCTC	5 cut(s)	97, 151, 155, 871, 880
Mox20I	TGGCCA	1 cut(s)	741
MscI	TGGCCA	1 cut(s)	741
MseI	TTAA	3 cut(s)	110, 467, 627
MslI	CAYNNNNRTG	1 cut(s)	1284
Msp20I	TGGCCA	1 cut(s)	741
MspA1I	CMGCKG	5 cut(s)	260, 386, 473, 545, 639
MspI	CCGG	1 cut(s)	444
MspR9I	CCNGG	4 cut(s)	150, 159, 738, 911
MunI	CAATTG	2 cut(s)	417, 777
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	4 cut(s)	150, 159, 738, 911
NdeII	GATC	2 cut(s)	847, 906
NlaIII	CATG	4 cut(s)	788, 1078, 1131, 1297
NlaIV	GGNNCC	1 cut(s)	645
NmuCI	GTSAC	1 cut(s)	439
NsbI	TGCGCA	1 cut(s)	527
NspI	RCATGY	1 cut(s)	1131
PagI	TCATGA	1 cut(s)	1074
PciSI	GCTCTTC	1 cut(s)	1043
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	5 cut(s)	50, 178, 214, 300, 1191
PfoI	TCCNGGA	3 cut(s)	148, 157, 909
PinAI	ACCGGT	1 cut(s)	443
PleI	GAGTC	1 cut(s)	1147
PpsI	GAGTC	1 cut(s)	1147
Ppu21I	YACGTR	1 cut(s)	1198
Psp124BI	GAGCTC	1 cut(s)	1038
Psp6I	CCWGG	4 cut(s)	148, 157, 736, 909
PspFI	CCCAGC	3 cut(s)	256, 639, 1117
PspGI	CCWGG	4 cut(s)	148, 157, 736, 909
PspN4I	GGNNCC	1 cut(s)	645
PspPI	GGNCC	2 cut(s)	446, 559
PstI	CTGCAG	5 cut(s)	265, 358, 457, 481, 493
PstNI	CAGNNNCTG	5 cut(s)	245, 389, 407, 497, 548
PvuII	CAGCTG	3 cut(s)	260, 386, 545
RsaI	GTAC	2 cut(s)	69, 723
RsaNI	GTAC	2 cut(s)	68, 722
RseI	CAYNNNNRTG	1 cut(s)	1284
SacI	GAGCTC	1 cut(s)	1038
SapI	GCTCTTC	1 cut(s)	1043
SaqAI	TTAA	3 cut(s)	110, 467, 627
Sau3AI	GATC	2 cut(s)	847, 906
Sau96I	GGNCC	2 cut(s)	446, 559
SchI	GAGTC	1 cut(s)	1148
ScrFI	CCNGG	4 cut(s)	150, 159, 738, 911
SduI	GDGCHC	3 cut(s)	646, 1038, 1082
SfaNI	GCATC	5 cut(s)	193, 513, 523, 788, 1305
SfcI	CTRYAG	5 cut(s)	261, 354, 453, 477, 489
SinI	GGWCC	1 cut(s)	446
SmiMI	CAYNNNNRTG	1 cut(s)	1284
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
Sse9I	AATT	7 cut(s)	83, 417, 554, 777, 942, 1045, 1122
SsiI	CCGC	6 cut(s)	471, 512, 637, 831, 948, 1202
SspI	AATATT	2 cut(s)	37, 1102
SspMI	CTAG	2 cut(s)	296, 350
SstI	GAGCTC	1 cut(s)	1038
StyD4I	CCNGG	4 cut(s)	148, 157, 736, 909
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	3 cut(s)	67, 613, 1063
TaiI	ACGT	1 cut(s)	1200
TaqI	TCGA	2 cut(s)	1088, 1137
TasI	AATT	7 cut(s)	83, 417, 554, 777, 942, 1045, 1122
TatI	WGTACW	1 cut(s)	67
TauI	GCSGC	1 cut(s)	833
TfiI	GAWTC	5 cut(s)	50, 178, 214, 300, 1191
Tru1I	TTAA	3 cut(s)	110, 467, 627
Tru9I	TTAA	3 cut(s)	110, 467, 627
TscAI	CASTG	2 cut(s)	498, 1066
TseFI	GTSAC	1 cut(s)	439
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	7 cut(s)	567, 606, 773, 1063, 1175, 1249, 1281
TspGWI	ACGGA	1 cut(s)	1171
TspRI	CASTG	2 cut(s)	498, 1066
VpaK11BI	GGWCC	1 cut(s)	446
XceI	RCATGY	1 cut(s)	1131
XmaJI	CCTAGG	1 cut(s)	295
XspI	CTAG	2 cut(s)	296, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.