Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001835

Physical Location & Seq

Genomic Coordinates Reverse (-)

32190327 .. 32194869

Gene Structure 4543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34360.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGAGTTTTCATTACCCAAAAAGAACTTTCCGTTGAATCACAGAGACTACACTTTGTACGAGGAAGTTGGTCAGGGTGTGAGTGCCATTGTCTACAGAGCTCTCTGCATCCCACTTGATGAGATTGTTGCCATCAAAGTAATCGACTTGGAAAAGTGCAACAATGACATGGATATGATTCGACGAGAAGTACAGACTATGATCTTGCTGGATCATCCTAATTTATTGAAAGCGCACTGCTCTTTCATGGCTACTAGGAGTCTGTGGATCGTTATGCCTTACATGGCCGCCGGATCCTGTCTGCACATCATCAAGTCTGCTCATCCCGATGGTTTTGAAGAGCACACTATCGTGACATTGTTGCATGGGGTTCTCAAGGCTCTTGCTTATCTACATTCCCACGGCCACATTCACAGGGATGTTAAGGCTGGAAATATACTGGTTAGTTCAAAAGGTGCAGTTAAGTTAGCAGACTTTGGCGTTTCAACAAGCTTGTTTGATTCTGGCAATAGACTACACTCAAGAAAAACTTTTGTCGGAACTCCATGCTGGATGGCTCCAGAAGTTATGCAACAATTGCATGGTTACGATTTCAAAGCAGATATTTGGTCTTTTGGGATAACAGCACTAGAACTTGCTCATGGTCATGCTCCATTCTCCAAGTATCCACCAATGAAGGTTTTGCTGATGACCTTACAAAATGCACCTCCTGGCCTTGACTATGAAAGGGACAAGCGATTTTCAAAGTCCTTCAAAGAGATAGTAGCTGCTTGCTTAGTGAAGGATCAAAAGAAGCGTCCTACAGCAGAGAAGCTTTTAAAGCACCGTTTCTTCAAGAATGCCCGTTCTAAGGAATTTATAGTTCGGACAATTCTTGATGGCCTTCGTCCCCTTGGTGATCGTTTTAGGATGTTGAAGCAAAAAGAGGCTGAATTGTTCGGACAAAATGGTGAAGAGCTTTTATCGCAGCAAGAGTATATACGAGGGATCAGCGCATGGAATTTTGACATAGAGGACTTGAAAAGACAGGCTGTTCTTATTCAGGATGATGATGGCATCACAATTGCAGAAAATCAAGAGTGGATCTGCAAACAGAAGGGTGGATTTGATATCTCAGTTGATATATTAAAGAGATCCATCCAGGACATGCCAAACGGCTTTACTAGATCACATTTTGGGGAATCAGTAGATTCTGTAAACGGTCCAGCAGCTTGCGTCGTTCCTGCACTTCATCGCATTCTGCAGCAAAATGCCATGCAAATGGAACAAGCAATGAGATTGATTGAAGTTTTCTATCAAACCACAGGCAATCACACGGAGTTCCCAGAGGCAGTAAGGCAGATGCAGTTGTCTTTGGCATCTGCAAGGGAGAAAGTCCTAGAAGCTCATGTGATTTCTCTTGAAAAGAGGATTAAGAAACTAGTTGACGAGTTGCAGATACAAAAGATAAAAAATGCCAAGCTGGAGAGACAACTAAGTCAGATTGACAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

499

Amino Acids

56.68

Weight (kDa)

8.7

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	17 - 278	1.2e-60	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	19 - 274	1.3e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14720 AT5G14720
fragaria_vesca	FvH4_4g34360 FvH4_4g34360 FvH4_6g50820 FvH4_6g50820 FvH4_6g50820 FvH4_6g50820 FvH4_6g50820
malus_domestica	MD09G1031900.v1.1 MD09G1032000.v1.1 MD16G1093600.v1.1 MD17G1033700.v1.1
prunus_persica	Prupe.1G252900_v2.0.a1 Prupe.1G252900_v2.0.a1 Prupe.1G252900_v2.0.a1 Prupe.1G252900_v2.0.a1 Prupe.1G252900_v2.0.a1 Prupe.3G286000_v2.0.a1 Prupe.3G286000_v2.0.a1 Prupe.3G286000_v2.0.a1 Prupe.3G286000_v2.0.a1
pyrus_communis	pycom111g02520 pycom16g07960 pycom17g03080
rosa_chinensis	RchiOBHm_Chr2g0172211 RchiOBHm_Chr4g0443771
rosa_laevigata	RLG00000005891 RLG00000022093
rosa_multiflora	Rmu_co8491651.1_g000001 Rmu_ssc0000252.1_g000052
rosa_roxburghii	Rroxscaffold_2G00080080 Rroxscaffold_5G00384340
rosa_rugosa	Rorug02G0557300 Rorug02G0557400 Rorug04G0347100
rosa_samantha	Rh2AG632700 Rh2BG646300 Rh2CG612900 Rh2DG653800 Rh2DG660900 Rh4AG407400 Rh4BG418300 Rh4CG432400 Rh4DG413600
rosa_wichuraiana	Rw2G052380 Rw4G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1476
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	1 cut(s)	288
AclWI	GGATC	8 cut(s)	219, 275, 288, 301, 792, 995, 1091, 1128
AcoI	YGGCCR	2 cut(s)	285, 403
AcsI	RAATTY	2 cut(s)	854, 1000
AfaI	GTAC	2 cut(s)	59, 192
AfiI	CCNNNNNNNGG	1 cut(s)	850
AhlI	ACTAGT	1 cut(s)	1420
AjnI	CCWGG	2 cut(s)	709, 1140
AleI	CACNNNNGTG	1 cut(s)	350
AluBI	AGCT	8 cut(s)	101, 492, 767, 814, 958, 1211, 1385, 1462
AluI	AGCT	8 cut(s)	101, 492, 767, 814, 958, 1211, 1385, 1462
Alw21I	GWGCWC	2 cut(s)	103, 345
Alw26I	GTCTC	2 cut(s)	39, 1462
AlwI	GGATC	8 cut(s)	219, 275, 288, 301, 792, 995, 1091, 1128
AoxI	GGCC	4 cut(s)	285, 403, 712, 880
ApeKI	GCWGC	4 cut(s)	767, 967, 1208, 1243
ApoI	RAATTY	2 cut(s)	854, 1000
ArsI	GACNNNNNNTTYG	2 cut(s)	781, 813
AspLEI	GCGC	2 cut(s)	235, 995
AspS9I	GGNCC	1 cut(s)	1202
AsuHPI	GGTGA	2 cut(s)	908, 962
AvaII	GGWCC	1 cut(s)	1202
BamHI	GGATCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	103
Bbv12I	GWGCWC	2 cut(s)	103, 345
BbvI	GCAGC	4 cut(s)	754, 979, 1220, 1255
BccI	CCATC	6 cut(s)	140, 323, 547, 872, 1046, 1145
BceAI	ACGGC	2 cut(s)	418, 1171
BciT130I	CCWGG	2 cut(s)	711, 1142
BciVI	GTATCC	1 cut(s)	675
BcoDI	GTCTC	2 cut(s)	39, 1462
BcuI	ACTAGT	1 cut(s)	1420
BfaI	CTAG	5 cut(s)	255, 629, 1164, 1379, 1421
BfmI	CTRYAG	3 cut(s)	94, 801, 1241
BfuI	GTATCC	1 cut(s)	675
BisI	GCNGC	5 cut(s)	288, 768, 968, 1209, 1244
BlsI	GCNGC	5 cut(s)	289, 769, 969, 1210, 1245
Bme1390I	CCNGG	2 cut(s)	711, 1142
Bme18I	GGWCC	1 cut(s)	1202
BmgT120I	GGNCC	1 cut(s)	1202
BmiI	GGNNCC	2 cut(s)	295, 558
BmrFI	CCNGG	2 cut(s)	711, 1142
BmsI	GCATC	4 cut(s)	117, 1065, 1332, 1367
BpmI	CTGGAG	2 cut(s)	543, 1484
BpuEI	CTTGAG	2 cut(s)	359, 505
BsaJI	CCNNGG	2 cut(s)	400, 892
Bsc4I	CCNNNNNNNGG	1 cut(s)	850
Bse1I	ACTGG	1 cut(s)	444
Bse3DI	GCAATG	1 cut(s)	1278
BseBI	CCWGG	2 cut(s)	711, 1142
BseDI	CCNNGG	2 cut(s)	400, 892
BseGI	GGATG	8 cut(s)	108, 214, 322, 424, 558, 915, 1051, 1137
BseLI	CCNNNNNNNGG	1 cut(s)	850
BseMI	GCAATG	1 cut(s)	1278
BseMII	CTCAG	1 cut(s)	1128
BseNI	ACTGG	1 cut(s)	444
BseXI	GCAGC	4 cut(s)	754, 979, 1220, 1255
BsgI	GTGCAG	3 cut(s)	287, 477, 1209
BshFI	GGCC	4 cut(s)	287, 405, 714, 882
BsiHKAI	GWGCWC	2 cut(s)	103, 345
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	2 cut(s)	743, 873
BslI	CCNNNNNNNGG	1 cut(s)	850
BsmAI	GTCTC	2 cut(s)	39, 1462
BsmFI	GGGAC	2 cut(s)	743, 873
BsmI	GAATGC	2 cut(s)	844, 1236
BsnI	GGCC	4 cut(s)	287, 405, 714, 882
Bsp1286I	GDGCHC	2 cut(s)	103, 345
BspACI	CCGC	1 cut(s)	288
BspANI	GGCC	4 cut(s)	287, 405, 714, 882
BspCNI	CTCAG	1 cut(s)	1127
BspLI	GGNNCC	2 cut(s)	295, 558
BspMAI	CTGCAG	1 cut(s)	1245
BspPI	GGATC	8 cut(s)	219, 275, 288, 301, 792, 995, 1091, 1128
BspQI	GCTCTTC	2 cut(s)	333, 948
BsrDI	GCAATG	1 cut(s)	1278
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	2 cut(s)	400, 892
BssT1I	CCWWGG	1 cut(s)	892
Bst2UI	CCWGG	2 cut(s)	711, 1142
Bst4CI	ACNGT	2 cut(s)	827, 1202
Bst6I	CTCTTC	2 cut(s)	333, 948
BstAPI	GCANNNNNTGC	1 cut(s)	577
BstC8I	GCNNGC	2 cut(s)	772, 1213
BstDEI	CTNAG	4 cut(s)	775, 849, 1114, 1475
BstDSI	CCRYGG	1 cut(s)	400
BstF5I	GGATG	8 cut(s)	108, 214, 322, 424, 558, 915, 1051, 1137
BstHHI	GCGC	2 cut(s)	235, 995
BstMAI	GTCTC	2 cut(s)	39, 1462
BstMWI	GCNNNNNNNGC	3 cut(s)	577, 820, 964
BstNI	CCWGG	2 cut(s)	711, 1142
BstNSI	RCATGY	1 cut(s)	1150
BstSCI	CCNGG	2 cut(s)	709, 1140
BstSFI	CTRYAG	3 cut(s)	94, 801, 1241
BstV1I	GCAGC	4 cut(s)	754, 979, 1220, 1255
BstX2I	RGATCY	3 cut(s)	293, 1083, 1133
BstXI	CCANNNNNNTGG	1 cut(s)	1261
BstYI	RGATCY	3 cut(s)	293, 1083, 1133
BsuI	GTATCC	1 cut(s)	675
BsuRI	GGCC	4 cut(s)	287, 405, 714, 882
BtgI	CCRYGG	1 cut(s)	400
BtgZI	GCGATG	1 cut(s)	1217
BtsCI	GGATG	8 cut(s)	108, 214, 322, 424, 558, 915, 1051, 1137
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	772, 1213
CfoI	GCGC	2 cut(s)	235, 995
Cfr13I	GGNCC	1 cut(s)	1202
CseI	GACGC	2 cut(s)	785, 1204
Csp6I	GTAC	2 cut(s)	58, 191
CviQI	GTAC	2 cut(s)	58, 191
DdeI	CTNAG	4 cut(s)	775, 849, 1114, 1475
DraI	TTTAAA	1 cut(s)	819
DrdI	GACNNNNNNGTC	1 cut(s)	1476
DseDI	GACNNNNNNGTC	1 cut(s)	1476
EaeI	YGGCCR	2 cut(s)	285, 403
Eam1104I	CTCTTC	2 cut(s)	333, 948
EarI	CTCTTC	2 cut(s)	333, 948
Ecl136II	GAGCTC	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	892
Eco24I	GRGCYC	1 cut(s)	103
Eco32I	GATATC	1 cut(s)	1111
Eco47I	GGWCC	1 cut(s)	1202
Eco53kI	GAGCTC	1 cut(s)	101
EcoICRI	GAGCTC	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	709, 1140
EcoRV	GATATC	1 cut(s)	1111
EcoT14I	CCWWGG	1 cut(s)	892
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	892
FalI	AAGNNNNNCTT	2 cut(s)	514, 546
FaqI	GGGAC	2 cut(s)	743, 873
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	5 cut(s)	288, 768, 968, 1209, 1244
FokI	GGATG	8 cut(s)	95, 201, 309, 431, 565, 922, 1058, 1124
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	5 cut(s)	288, 768, 968, 1209, 1244
FspBI	CTAG	5 cut(s)	255, 629, 1164, 1379, 1421
GlaI	GCGC	2 cut(s)	234, 994
GluI	GCNGC	5 cut(s)	288, 768, 968, 1209, 1244
GsuI	CTGGAG	2 cut(s)	543, 1484
HaeIII	GGCC	4 cut(s)	287, 405, 714, 882
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	2 cut(s)	785, 1204
HhaI	GCGC	2 cut(s)	235, 995
Hin6I	GCGC	2 cut(s)	233, 993
HinP1I	GCGC	2 cut(s)	233, 993
HincII	GTYRAC	1 cut(s)	1426
HindII	GTYRAC	1 cut(s)	1426
HindIII	AAGCTT	2 cut(s)	490, 812
HinfI	GANTC	6 cut(s)	37, 178, 259, 500, 1181, 1190
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	2 cut(s)	908, 962
Hpy166II	GTNNAC	3 cut(s)	94, 1198, 1426
Hpy188I	TCNGA	4 cut(s)	539, 867, 941, 1482
Hpy188III	TCNNGA	9 cut(s)	326, 352, 522, 560, 835, 875, 1043, 1076, 1400
Hpy8I	GTNNAC	3 cut(s)	94, 1198, 1426
Hpy99I	CGWCG	2 cut(s)	186, 1220
HpyAV	CCTTC	5 cut(s)	670, 760, 775, 893, 1090
HpyCH4III	ACNGT	2 cut(s)	827, 1202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	577, 820, 964
HpyF3I	CTNAG	4 cut(s)	775, 849, 1114, 1475
HspAI	GCGC	2 cut(s)	233, 993
LguI	GCTCTTC	2 cut(s)	333, 948
LmnI	GCTCC	2 cut(s)	562, 655
Lsp1109I	GCAGC	4 cut(s)	754, 979, 1220, 1255
LweI	GCATC	4 cut(s)	117, 1065, 1332, 1367
MaeI	CTAG	5 cut(s)	255, 629, 1164, 1379, 1421
MaeIII	GTNAC	2 cut(s)	352, 584
MboII	GAAGA	3 cut(s)	350, 823, 965
MfeI	CAATTG	2 cut(s)	575, 1062
MflI	RGATCY	3 cut(s)	293, 1083, 1133
MhlI	GDGCHC	2 cut(s)	103, 345
MluCI	AATT	7 cut(s)	220, 575, 854, 870, 932, 1000, 1062
MlyI	GAGTC	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	7 cut(s)	55, 717, 919, 977, 1006, 1321, 1401
MseI	TTAA	5 cut(s)	423, 462, 818, 1127, 1413
MslI	CAYNNNNRTG	6 cut(s)	173, 327, 350, 417, 645, 1259
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	2 cut(s)	711, 1142
MunI	CAATTG	2 cut(s)	575, 1062
Mva1269I	GAATGC	2 cut(s)	844, 1236
MvaI	CCWGG	2 cut(s)	711, 1142
MwoI	GCNNNNNNNGC	3 cut(s)	577, 820, 964
NlaIV	GGNNCC	2 cut(s)	295, 558
NmuCI	GTSAC	1 cut(s)	352
NspI	RCATGY	1 cut(s)	1150
OliI	CACNNNNGTG	1 cut(s)	350
PciSI	GCTCTTC	2 cut(s)	333, 948
PctI	GAATGC	2 cut(s)	844, 1236
PfeI	GAWTC	5 cut(s)	37, 178, 500, 1181, 1190
PfoI	TCCNGGA	1 cut(s)	1140
PkrI	GCNGC	5 cut(s)	289, 769, 969, 1210, 1245
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	709, 1140
PspGI	CCWGG	2 cut(s)	709, 1140
PspN4I	GGNNCC	2 cut(s)	295, 558
PspPI	GGNCC	1 cut(s)	1202
PstI	CTGCAG	1 cut(s)	1245
PsuI	RGATCY	3 cut(s)	293, 1083, 1133
RsaI	GTAC	2 cut(s)	59, 192
RsaNI	GTAC	2 cut(s)	58, 191
RseI	CAYNNNNRTG	6 cut(s)	173, 327, 350, 417, 645, 1259
SacI	GAGCTC	1 cut(s)	103
SapI	GCTCTTC	2 cut(s)	333, 948
SaqAI	TTAA	5 cut(s)	423, 462, 818, 1127, 1413
SatI	GCNGC	5 cut(s)	288, 768, 968, 1209, 1244
Sau96I	GGNCC	1 cut(s)	1202
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	2 cut(s)	711, 1142
SduI	GDGCHC	2 cut(s)	103, 345
SfaNI	GCATC	4 cut(s)	117, 1065, 1332, 1367
SfcI	CTRYAG	3 cut(s)	94, 801, 1241
SinI	GGWCC	1 cut(s)	1202
SmiMI	CAYNNNNRTG	6 cut(s)	173, 327, 350, 417, 645, 1259
SmlI	CTYRAG	2 cut(s)	374, 520
SmoI	CTYRAG	2 cut(s)	374, 520
SpeI	ACTAGT	1 cut(s)	1420
Sse9I	AATT	7 cut(s)	220, 575, 854, 870, 932, 1000, 1062
SsiI	CCGC	1 cut(s)	288
SspMI	CTAG	5 cut(s)	255, 629, 1164, 1379, 1421
SstI	GAGCTC	1 cut(s)	103
StyD4I	CCNGG	2 cut(s)	709, 1140
StyI	CCWWGG	1 cut(s)	892
TaaI	ACNGT	2 cut(s)	827, 1202
TaqI	TCGA	2 cut(s)	144, 181
TasI	AATT	7 cut(s)	220, 575, 854, 870, 932, 1000, 1062
TatI	WGTACW	1 cut(s)	190
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	5 cut(s)	37, 178, 500, 1181, 1190
Tru1I	TTAA	5 cut(s)	423, 462, 818, 1127, 1413
Tru9I	TTAA	5 cut(s)	423, 462, 818, 1127, 1413
TscAI	CASTG	1 cut(s)	242
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	4 cut(s)	767, 967, 1208, 1243
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	4 cut(s)	235, 689, 738, 1220
TspGWI	ACGGA	2 cut(s)	21, 1331
TspRI	CASTG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	1202
XapI	RAATTY	2 cut(s)	854, 1000
XceI	RCATGY	1 cut(s)	1150
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	5 cut(s)	255, 629, 1164, 1379, 1421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.