Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001835

Physical Location & Seq

Genomic Coordinates Forward (+)

68404383 .. 68405565

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0557400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGTCATGATGATGGGGTTGGATAGGTTGGTCGGGAATTTGAAGTCCAAGTTCAGGTCCTTTAAGATGAAGAAACCAGCTACGGATTACAACAAGATCGAAAAGAGCGATAGCATGAGAGTCGAAATAAGAAGCAAGAAGGCCAGAAAGCTCATTGAGAAGACACTGAAAGTTGCAGACTCTCCCAAGACGAAAACTTTCGCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

69

Amino Acids

8.03

Weight (kDa)

10.42

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14720 AT5G14720
fragaria_vesca	FvH4_4g34360 FvH4_4g34360 FvH4_6g50820 FvH4_6g50820 FvH4_6g50820 FvH4_6g50820 FvH4_6g50820
malus_domestica	MD09G1031900.v1.1 MD09G1032000.v1.1 MD16G1093600.v1.1 MD17G1033700.v1.1
prunus_persica	Prupe.1G252900_v2.0.a1 Prupe.1G252900_v2.0.a1 Prupe.1G252900_v2.0.a1 Prupe.1G252900_v2.0.a1 Prupe.1G252900_v2.0.a1 Prupe.3G286000_v2.0.a1 Prupe.3G286000_v2.0.a1 Prupe.3G286000_v2.0.a1 Prupe.3G286000_v2.0.a1
pyrus_communis	pycom111g02520 pycom16g07960 pycom17g03080
rosa_chinensis	RchiOBHm_Chr2g0172211 RchiOBHm_Chr4g0443771
rosa_laevigata	RLG00000005891 RLG00000022093
rosa_multiflora	Rmu_co8491651.1_g000001 Rmu_ssc0000252.1_g000052
rosa_roxburghii	Rroxscaffold_2G00080080 Rroxscaffold_5G00384340
rosa_rugosa	Rorug02G0557300 Rorug02G0557400 Rorug04G0347100
rosa_samantha	Rh2AG632700 Rh2BG646300 Rh2CG612900 Rh2DG653800 Rh2DG660900 Rh4AG407400 Rh4BG418300 Rh4CG432400 Rh4DG413600
rosa_wichuraiana	Rw2G052380 Rw4G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	2 cut(s)	80, 151
AluI	AGCT	2 cut(s)	80, 151
AoxI	GGCC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	167
BccI	CCATC	1 cut(s)	7
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	54
BsnI	GGCC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	143
BspHI	TCATGA	1 cut(s)	6
BssMI	GATC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	164
CciI	TCATGA	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	57
CviAII	CATG	2 cut(s)	7, 115
CviJI	RGCY	3 cut(s)	80, 143, 151
CviKI_1	RGCY	3 cut(s)	80, 143, 151
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	57
FaeI	CATG	2 cut(s)	10, 118
FaiI	YATR	2 cut(s)	8, 116
FatI	CATG	2 cut(s)	6, 114
HaeIII	GGCC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	10, 118
HinfI	GANTC	2 cut(s)	120, 179
Hpy188III	TCNNGA	2 cut(s)	7, 34
HpyAV	CCTTC	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	176
Hsp92II	CATG	2 cut(s)	10, 118
Kzo9I	GATC	1 cut(s)	96
LpnPI	CCDG	3 cut(s)	40, 90, 157
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	2 cut(s)	82, 172
MluCI	AATT	1 cut(s)	37
MlyI	GAGTC	2 cut(s)	129, 173
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	11
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	2 cut(s)	10, 118
PagI	TCATGA	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	197
PleI	GAGTC	2 cut(s)	128, 173
PpsI	GAGTC	2 cut(s)	128, 173
PpuMI	RGGWCCY	1 cut(s)	57
Psp5II	RGGWCCY	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	57
PspPPI	RGGWCCY	1 cut(s)	57
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	2 cut(s)	129, 173
SetI	ASST	4 cut(s)	29, 59, 82, 153
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	99, 123
TasI	AATT	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	1 cut(s)	37
XmnI	GAANNNNTTC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.