Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8491651.1

Orthogroup ID

OG0001835

Physical Location & Seq

Genomic Coordinates Forward (+)

10 .. 2505

Gene Structure 2496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8491651.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgattcgacgagaagtacagactatgatcttgctggatcatcctaatctgctgaaagcacactgctctttcactgctaccaggagtctgtggattgtcatgccttacatggccgccggttcctgtcttcacatcattaagtctgatcatcccaatggttttgaagagcataccatcgtgacattgttgtatggggtcatcaaagctcttgcttatctacattcccatggctacattcacagagatgttaagaagcatatcatgtttgattcttcttcgaaattcattgcatttcatatttgtttaaccgtctcacccctttttgacaggatggctccagaagttatgcagcaattgcatggatacgacttcaaagcagacatctggtcatttgggataacagcactagaacttgctcatggtcatgctccattctccaagtatccaccaatgaaggttttgctgatgaccttacaaaatgcgcctcctggccttgactatgaaagggacaagcgattttcaaagtcctttaaagagatagtagctgcttgcttagtaaaggatccaaagaagcgtcctactgcagagaagcttttgaagcaccgtttcttcaagcatgcacgttcaaaggaatttatagttcggacaattcttgatggcctttgtccccttggtgatcgatttagaatgttgaaggtttatatcttcatatcagatttatacagattcctgcagaaatattgtgcatttatgtcttgcatgtttttatatgccttcttcttccaggaaaaagaggctgaattctttgcacaaaatgaggctatgtatggtgacgagcatttatcacaggatgatgatggcatcgcatttgcagaaaatcaagagtggatctgcaaacagaagggtgaaattgatgtctcagttgatctattaaataggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

313

Amino Acids

36.38

Weight (kDa)

8.32

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14720 AT5G14720
fragaria_vesca	FvH4_4g34360 FvH4_4g34360 FvH4_6g50820 FvH4_6g50820 FvH4_6g50820 FvH4_6g50820 FvH4_6g50820
malus_domestica	MD09G1031900.v1.1 MD09G1032000.v1.1 MD16G1093600.v1.1 MD17G1033700.v1.1
prunus_persica	Prupe.1G252900_v2.0.a1 Prupe.1G252900_v2.0.a1 Prupe.1G252900_v2.0.a1 Prupe.1G252900_v2.0.a1 Prupe.1G252900_v2.0.a1 Prupe.3G286000_v2.0.a1 Prupe.3G286000_v2.0.a1 Prupe.3G286000_v2.0.a1 Prupe.3G286000_v2.0.a1
pyrus_communis	pycom111g02520 pycom16g07960 pycom17g03080
rosa_chinensis	RchiOBHm_Chr2g0172211 RchiOBHm_Chr4g0443771
rosa_laevigata	RLG00000005891 RLG00000022093
rosa_multiflora	Rmu_co8491651.1_g000001 Rmu_ssc0000252.1_g000052
rosa_roxburghii	Rroxscaffold_2G00080080 Rroxscaffold_5G00384340
rosa_rugosa	Rorug02G0557300 Rorug02G0557400 Rorug04G0347100
rosa_samantha	Rh2AG632700 Rh2BG646300 Rh2CG612900 Rh2DG653800 Rh2DG660900 Rh4AG407400 Rh4BG418300 Rh4CG432400 Rh4DG413600
rosa_wichuraiana	Rw2G052380 Rw4G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	4 cut(s)	45, 557, 570, 896
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	3 cut(s)	281, 632, 800
AfaI	GTAC	1 cut(s)	18
AgsI	TTSAA	7 cut(s)	164, 373, 522, 598, 613, 627, 694
AhdI	GACNNNNNGTC	1 cut(s)	385
AjnI	CCWGG	3 cut(s)	80, 487, 783
AluBI	AGCT	3 cut(s)	206, 545, 592
AluI	AGCT	3 cut(s)	206, 545, 592
Alw26I	GTCTC	2 cut(s)	316, 922
AlwI	GGATC	4 cut(s)	45, 557, 570, 896
AoxI	GGCC	3 cut(s)	111, 490, 658
ApeKI	GCWGC	2 cut(s)	349, 545
ApoI	RAATTY	3 cut(s)	281, 632, 800
AspLEI	GCGC	1 cut(s)	484
AsuHPI	GGTGA	4 cut(s)	306, 686, 842, 917
AsuII	TTCGAA	1 cut(s)	278
BamHI	GGATCC	1 cut(s)	562
BbsI	GAAGAC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	361, 532
BccI	CCATC	4 cut(s)	182, 325, 650, 851
BciT130I	CCWGG	3 cut(s)	82, 489, 785
BciVI	GTATCC	2 cut(s)	356, 453
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	316, 922
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	2 cut(s)	582, 731
BfuI	GTATCC	2 cut(s)	356, 453
BisI	GCNGC	3 cut(s)	114, 350, 546
BlsI	GCNGC	3 cut(s)	115, 351, 547
Bme1390I	CCNGG	3 cut(s)	82, 489, 785
BmeRI	GACNNNNNGTC	1 cut(s)	385
BmiI	GGNNCC	3 cut(s)	121, 336, 564
BmrFI	CCNGG	3 cut(s)	82, 489, 785
BmsI	GCATC	1 cut(s)	870
BpiI	GAAGAC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	321
Bpu14I	TTCGAA	1 cut(s)	278
Bsa29I	ATCGAT	1 cut(s)	679
BsaJI	CCNNGG	2 cut(s)	226, 670
Bse118I	RCCGGY	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	3 cut(s)	82, 489, 785
BseCI	ATCGAT	1 cut(s)	679
BseDI	CCNNGG	2 cut(s)	226, 670
BseGI	GGATG	4 cut(s)	40, 148, 336, 856
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	933
BseXI	GCAGC	2 cut(s)	361, 532
BshFI	GGCC	3 cut(s)	113, 492, 660
BshVI	ATCGAT	1 cut(s)	679
BsiSI	CCGG	1 cut(s)	117
BslFI	GGGAC	2 cut(s)	521, 651
BsmAI	GTCTC	2 cut(s)	316, 922
BsmBI	CGTCTC	1 cut(s)	316
BsmFI	GGGAC	2 cut(s)	521, 651
BsnI	GGCC	3 cut(s)	113, 492, 660
Bsp119I	TTCGAA	1 cut(s)	278
Bsp143I	GATC	7 cut(s)	27, 37, 145, 562, 676, 888, 925
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	3 cut(s)	113, 492, 660
BspCNI	CTCAG	1 cut(s)	932
BspDI	ATCGAT	1 cut(s)	679
BspLI	GGNNCC	3 cut(s)	121, 336, 564
BspMAI	CTGCAG	2 cut(s)	586, 735
BspPI	GGATC	4 cut(s)	45, 557, 570, 896
BspQI	GCTCTTC	1 cut(s)	159
BspT104I	TTCGAA	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	285
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	226, 670
BssMI	GATC	7 cut(s)	27, 37, 145, 562, 676, 888, 925
BssT1I	CCWWGG	2 cut(s)	226, 670
Bst2UI	CCWGG	3 cut(s)	82, 489, 785
Bst4CI	ACNGT	2 cut(s)	310, 605
Bst6I	CTCTTC	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	550, 618
BstDEI	CTNAG	2 cut(s)	553, 919
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	4 cut(s)	40, 148, 336, 856
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	7 cut(s)	30, 40, 148, 565, 679, 891, 928
BstMAI	GTCTC	2 cut(s)	316, 922
BstMBI	GATC	7 cut(s)	27, 37, 145, 562, 676, 888, 925
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 598
BstNI	CCWGG	3 cut(s)	82, 489, 785
BstNSI	RCATGY	2 cut(s)	620, 763
BstSCI	CCNGG	3 cut(s)	80, 487, 783
BstSFI	CTRYAG	2 cut(s)	582, 731
BstV1I	GCAGC	2 cut(s)	361, 532
BstV2I	GAAGAC	1 cut(s)	119
BstX2I	RGATCY	2 cut(s)	562, 888
BstYI	RGATCY	2 cut(s)	562, 888
Bsu15I	ATCGAT	1 cut(s)	679
BsuI	GTATCC	2 cut(s)	356, 453
BsuRI	GGCC	3 cut(s)	113, 492, 660
BsuTUI	ATCGAT	1 cut(s)	679
BtgI	CCRYGG	1 cut(s)	226
BtgZI	GCGATG	1 cut(s)	847
BtsCI	GGATG	4 cut(s)	40, 148, 336, 856
BtsI	GCAGTG	2 cut(s)	61, 72
BtsIMutI	CAGTG	2 cut(s)	61, 72
Cac8I	GCNNGC	2 cut(s)	550, 618
CfoI	GCGC	1 cut(s)	484
Cfr10I	RCCGGY	1 cut(s)	116
ClaI	ATCGAT	1 cut(s)	679
CseI	GACGC	1 cut(s)	563
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	9 cut(s)	100, 109, 227, 262, 359, 419, 425, 617, 760
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	2 cut(s)	553, 919
DpnI	GATC	7 cut(s)	29, 39, 147, 564, 678, 890, 927
DpnII	GATC	7 cut(s)	27, 37, 145, 562, 676, 888, 925
DraI	TTTAAA	1 cut(s)	532
DriI	GACNNNNNGTC	1 cut(s)	385
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	159
Eam1105I	GACNNNNNGTC	1 cut(s)	385
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	226, 670
EcoRI	GAATTC	1 cut(s)	800
EcoRII	CCWGG	3 cut(s)	80, 487, 783
EcoT14I	CCWWGG	2 cut(s)	226, 670
ErhI	CCWWGG	2 cut(s)	226, 670
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	9 cut(s)	103, 112, 230, 265, 362, 422, 428, 620, 763
FaqI	GGGAC	2 cut(s)	521, 651
FatI	CATG	9 cut(s)	99, 108, 226, 261, 358, 418, 424, 616, 759
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	114, 350, 546
FokI	GGATG	4 cut(s)	27, 135, 343, 863
Fsp4HI	GCNGC	3 cut(s)	114, 350, 546
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	3 cut(s)	114, 350, 546
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	3 cut(s)	113, 492, 660
HapII	CCGG	1 cut(s)	117
HgaI	GACGC	1 cut(s)	563
HhaI	GCGC	1 cut(s)	484
Hin1II	CATG	9 cut(s)	103, 112, 230, 265, 362, 422, 428, 620, 763
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	4 cut(s)	4, 85, 269, 726
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	4 cut(s)	306, 686, 842, 917
Hpy188I	TCNGA	3 cut(s)	145, 645, 715
Hpy188III	TCNNGA	4 cut(s)	178, 338, 653, 881
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	4 cut(s)	448, 688, 784, 895
HpyCH4III	ACNGT	2 cut(s)	310, 605
HpyCH4IV	ACGT	1 cut(s)	622
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 598
HpyF3I	CTNAG	2 cut(s)	553, 919
HpySE526I	ACGT	1 cut(s)	622
Hsp92II	CATG	9 cut(s)	103, 112, 230, 265, 362, 422, 428, 620, 763
HspAI	GCGC	1 cut(s)	482
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	7 cut(s)	27, 37, 145, 562, 676, 888, 925
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	2 cut(s)	340, 433
Lsp1109I	GCAGC	2 cut(s)	361, 532
LweI	GCATC	1 cut(s)	870
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	2 cut(s)	178, 830
MalI	GATC	7 cut(s)	29, 39, 147, 564, 678, 890, 927
MboI	GATC	7 cut(s)	27, 37, 145, 562, 676, 888, 925
MboII	GAAGA	8 cut(s)	119, 176, 264, 267, 601, 697, 769, 772
MfeI	CAATTG	1 cut(s)	353
MflI	RGATCY	2 cut(s)	562, 888
MluCI	AATT	6 cut(s)	281, 353, 632, 648, 800, 909
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	3 cut(s)	495, 787, 811
MseI	TTAA	5 cut(s)	138, 249, 305, 531, 932
MslI	CAYNNNNRTG	4 cut(s)	153, 225, 243, 423
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	3 cut(s)	82, 489, 785
MunI	CAATTG	1 cut(s)	353
MvaI	CCWGG	3 cut(s)	82, 489, 785
MwoI	GCNNNNNNNGC	2 cut(s)	355, 598
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	7 cut(s)	27, 37, 145, 562, 676, 888, 925
NlaIII	CATG	9 cut(s)	103, 112, 230, 265, 362, 422, 428, 620, 763
NlaIV	GGNNCC	3 cut(s)	121, 336, 564
NmuCI	GTSAC	2 cut(s)	178, 830
NspI	RCATGY	2 cut(s)	620, 763
NspV	TTCGAA	1 cut(s)	278
PaeI	GCATGC	1 cut(s)	620
PciSI	GCTCTTC	1 cut(s)	159
PfeI	GAWTC	3 cut(s)	4, 269, 726
PfoI	TCCNGGA	1 cut(s)	783
PkrI	GCNGC	3 cut(s)	115, 351, 547
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
Psp6I	CCWGG	3 cut(s)	80, 487, 783
PspGI	CCWGG	3 cut(s)	80, 487, 783
PspN4I	GGNNCC	3 cut(s)	121, 336, 564
PstI	CTGCAG	2 cut(s)	586, 735
PsuI	RGATCY	2 cut(s)	562, 888
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	4 cut(s)	153, 225, 243, 423
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	5 cut(s)	138, 249, 305, 531, 932
SatI	GCNGC	3 cut(s)	114, 350, 546
Sau3AI	GATC	7 cut(s)	27, 37, 145, 562, 676, 888, 925
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	3 cut(s)	82, 489, 785
SetI	ASST	8 cut(s)	208, 459, 473, 547, 594, 625, 699, 941
SfaNI	GCATC	1 cut(s)	870
SfcI	CTRYAG	2 cut(s)	582, 731
SfuI	TTCGAA	1 cut(s)	278
SmiMI	CAYNNNNRTG	4 cut(s)	153, 225, 243, 423
SphI	GCATGC	1 cut(s)	620
Sse9I	AATT	6 cut(s)	281, 353, 632, 648, 800, 909
SsiI	CCGC	1 cut(s)	114
SspI	AATATT	1 cut(s)	740
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	3 cut(s)	80, 487, 783
StyI	CCWWGG	2 cut(s)	226, 670
TaaI	ACNGT	2 cut(s)	310, 605
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	3 cut(s)	7, 278, 679
TasI	AATT	6 cut(s)	281, 353, 632, 648, 800, 909
TatI	WGTACW	1 cut(s)	16
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	3 cut(s)	4, 269, 726
Tru1I	TTAA	5 cut(s)	138, 249, 305, 531, 932
Tru9I	TTAA	5 cut(s)	138, 249, 305, 531, 932
TscAI	CASTG	2 cut(s)	68, 79
TseFI	GTSAC	2 cut(s)	178, 830
TseI	GCWGC	2 cut(s)	349, 545
Tsp45I	GTSAC	2 cut(s)	178, 830
TspDTI	ATGAA	5 cut(s)	274, 284, 467, 516, 697
TspRI	CASTG	2 cut(s)	68, 79
XapI	RAATTY	3 cut(s)	281, 632, 800
XceI	RCATGY	2 cut(s)	620, 763
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.