MD16G1093600.v1.1

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
6483445 .. 6488841
5397 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1093600.v1.1.491

Sequence Viewer

Length: 1773 bp
ATGGAATTTTTACCCAAAAAGGACTTTCCGGTGAACCCAAAAGACTACAAACTGTACGAAGAAGTCGGTCAGGGCGTGAGCGCCACCGTCTACAGAGCTCTCTGCATCCCACTTAATCAAACCGTCGCCATCAAAGTCCTCGACCTTGAGAAATGCAGGAACGACTTGGACGCTATTCGGAGAGAAGTGCAGACCATGATCCTGCTTGACCATCCGAATCTGCTCAAGGCTCACTGCTCTTTCACTGCCGGCAGTAGCCTCTGGATCGTCACGCCTTACATGGCCTCTGGTTCGTGTCTTCACATCATGAAATCTGCCCACCCTGATGGTTTTGAGCAGCCCGTTATTGCTACATTGTTGTATGCGGTTCTCAAAGCCCTTGCTTATCTGCATTGCCATGGACACATTCATAGAGATGTTAAGGCTGGTAATATACTGGTTGATACAAAAGGTGCAGTTAAGTTAGCAGACTTTGGAGTTTCAGCGAGCTTGTTCGACACTGGCCATAGACAACATACAAGAAAAACGTTTGTTGGAACTCCTTGCTGGATGGCTCCGGAAGTTATGCAGCAATTGCATGGATATGACTTTAAAGCAGACATCTGGTCTTTTGGGATAACAGCACTGGAACTTGCTCATGGTCATGCTCCATTTTCCAAGTACCCACCAATGAAGGTTTTGTTAATGACCTTACAGAATGCTCCTCCTGGCCTTGACTATGAGAGGGACAAGAAATTTTCAAAGTCATTTAAAGAGATAGTAGCTGCCTGCTTAGTTAAGGATCCGAAGAAGCGTCCTACTGCGGAAAAGCTCTTGAATCACCGTTTCTTCAAACATGTGCATTCAAAGGAGCTTATAGCAGGGTCAATTCTTAATGGTCTTTCTCCCCTTGGAGATCGTTTTAGGATGTTGAAGGAAAAAGAGGCTGAGTTCTTTGCACAAAGCGAGTCTTTTTATGGTGACAAAGACCATTTATCACAGCAAGAGTATATACGAGGGATCAGTGCATGGAATTTTGATCTAGATGATTTGAAACGACAGGCTGCTATTATTCAAGATGATGATGGCATCACCATTGCTGAAAACCAAGACTGGAGCTGCAAACAGAATGGTGGATTTGGTAAATCAGCTGGTCTAACAGAAAGATCGATATGGAAAGATTCTGGCCTCGGGGAAATTGAAGAAATTGCTGATTTATCACCATCAGGACAAGGAAAAAAGAGTAGCTATTTTGGAGTTGATTTGGAAAGAATAGTACCTTCCTCAAAAACTGATCATTCCCCTTCTGTCAGTGGTGATGAGGAGGGCAGTGATCACTTGGAACATCATCAGAAGAGAGATGGTAGTTGTTCTTCATATGAGACCACATCAGATGACCAAGGGTTGCAAGGGCGATGCAGTAGTACGATCCCATATTCCAGTCCTAAGGACACTCCAAACGACTTTACTATCTCTTCTGTGATTGGTACATCCGCTTCCATTATTCCTGCGCTCCATTATATTTTGCAGAAAAATGCCATGCAAAAGGAAGAAACAATGAGATTGATTGAAATTGTAGATCAAATCACTGGCAATCATACGGAAATCACAGAGGCAGTAACCCGTAATAAGCACCTGCAGATGTGTACGGTTTCTGCAAGAGAGAGAGTCTTAGAATCCCGTGTGATTAGTATTCGACAAAGAATTGACAAACTTGTCGAAGAGTTGCGGATACAGAAAACAAAGAATGCCGAGCTGGAGAGGCGATTAAGTGCTTTGGCTGATAAGAAGTAG

Protein Analysis

591

Amino Acids

66.04

Weight (kDa)

6.67

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 16 - 277 7.4e-60 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 17 - 273 3.5e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1623
AasI GACNNNNNNGTC 1 cut(s) 1694
Acc36I ACCTGC 1 cut(s) 1623
AccI GTMKAC 1 cut(s) 90
AccIII TCCGGA 1 cut(s) 556
AciI CCGC 4 cut(s) 365, 803, 1473, 1708
AclI AACGTT 1 cut(s) 527
AclWI GGATC 6 cut(s) 193, 272, 776, 789, 1007, 1402
AcoI YGGCCR 1 cut(s) 502
AcsI RAATTY 3 cut(s) 5, 734, 1012
AfaI GTAC 6 cut(s) 56, 662, 1257, 1405, 1468, 1627
AflIII ACRYGT 1 cut(s) 835
AgsI TTSAA 9 cut(s) 741, 817, 832, 846, 913, 1033, 1055, 1181, 1550
AhdI GACNNNNNGTC 1 cut(s) 604
AjnI CCWGG 1 cut(s) 706
AluBI AGCT 9 cut(s) 98, 489, 764, 811, 853, 1098, 1130, 1227, 1735
AluI AGCT 9 cut(s) 98, 489, 764, 811, 853, 1098, 1130, 1227, 1735
Alw21I GWGCWC 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 1355
AlwI GGATC 6 cut(s) 193, 272, 776, 789, 1007, 1402
Ama87I CYCGRG 1 cut(s) 1169
Aor13HI TCCGGA 1 cut(s) 556
AoxI GGCC 4 cut(s) 282, 502, 709, 1165
ApeKI GCWGC 5 cut(s) 337, 568, 764, 1043, 1098
ApoI RAATTY 3 cut(s) 5, 734, 1012
AspLEI GCGC 2 cut(s) 83, 1492
AsuHPI GGTGA 6 cut(s) 43, 812, 971, 1063, 1191, 1307
AvaI CYCGRG 1 cut(s) 1169
AxyI CCTNAGG 1 cut(s) 1425
BalI TGGCCA 1 cut(s) 504
BamHI GGATCC 1 cut(s) 781
BanII GRGCYC 1 cut(s) 100
BarI GAAGNNNNNNTAC 4 cut(s) 1336, 1368, 1459, 1491
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 100
BbvI GCAGC 5 cut(s) 349, 580, 751, 1030, 1085
BccI CCATC 7 cut(s) 137, 219, 320, 544, 1058, 1210, 1334
BciT130I CCWGG 1 cut(s) 708
BciVI GTATCC 1 cut(s) 1704
BclI TGATCA 2 cut(s) 1273, 1312
BcoDI GTCTC 1 cut(s) 1355
BfaI CTAG 1 cut(s) 1022
BfmI CTRYAG 2 cut(s) 91, 1616
BfoI RGCGCY 1 cut(s) 84
BfuAI ACCTGC 1 cut(s) 1623
BfuI GTATCC 1 cut(s) 1704
BisI GCNGC 5 cut(s) 338, 569, 765, 1044, 1099
BlsI GCNGC 5 cut(s) 339, 570, 766, 1045, 1100
Bme1390I CCNGG 1 cut(s) 708
BmeRI GACNNNNNGTC 1 cut(s) 604
BmeT110I CYCGRG 1 cut(s) 1169
BmiI GGNNCC 2 cut(s) 555, 783
BmrFI CCNGG 1 cut(s) 708
BmsI GCATC 3 cut(s) 114, 1077, 1385
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 2 cut(s) 1114, 1757
BpuEI CTTGAG 2 cut(s) 167, 209
Bsa29I ATCGAT 1 cut(s) 1148
BsaI GGTCTC 1 cut(s) 1355
BsaJI CCNNGG 4 cut(s) 397, 889, 1168, 1378
BsaWI WCCGGW 2 cut(s) 28, 556
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 6 cut(s) 441, 505, 630, 1097, 1419, 1573
Bse21I CCTNAGG 1 cut(s) 1425
Bse3DI GCAATG 2 cut(s) 391, 1074
BseAI TCCGGA 1 cut(s) 556
BseBI CCWGG 1 cut(s) 708
BseCI ATCGAT 1 cut(s) 1148
BseDI CCNNGG 4 cut(s) 397, 889, 1168, 1378
BseGI GGATG 5 cut(s) 105, 211, 555, 912, 1469
BseMI GCAATG 2 cut(s) 391, 1074
BseMII CTCAG 1 cut(s) 918
BseNI ACTGG 6 cut(s) 441, 505, 630, 1097, 1419, 1573
BseRI GAGGAG 2 cut(s) 693, 1316
BseXI GCAGC 5 cut(s) 349, 580, 751, 1030, 1085
BsgI GTGCAG 2 cut(s) 209, 474
BshFI GGCC 4 cut(s) 284, 504, 711, 1167
BshVI ATCGAT 1 cut(s) 1148
BsiHKAI GWGCWC 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 1169
BsiSI CCGG 3 cut(s) 29, 249, 557
BslFI GGGAC 1 cut(s) 740
BsmAI GTCTC 1 cut(s) 1355
BsmFI GGGAC 1 cut(s) 740
BsmI GAATGC 3 cut(s) 703, 841, 1732
BsnI GGCC 4 cut(s) 284, 504, 711, 1167
Bso31I GGTCTC 1 cut(s) 1355
BsoBI CYCGRG 1 cut(s) 1169
Bsp1286I GDGCHC 1 cut(s) 100
Bsp13I TCCGGA 1 cut(s) 556
Bsp19I CCATGG 1 cut(s) 397
BspACI CCGC 4 cut(s) 365, 803, 1473, 1708
BspANI GGCC 4 cut(s) 284, 504, 711, 1167
BspCNI CTCAG 1 cut(s) 919
BspDI ATCGAT 1 cut(s) 1148
BspEI TCCGGA 1 cut(s) 556
BspHI TCATGA 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 555, 783
BspMAI CTGCAG 1 cut(s) 1620
BspMI ACCTGC 1 cut(s) 1623
BspPI GGATC 6 cut(s) 193, 272, 776, 789, 1007, 1402
BspTNI GGTCTC 1 cut(s) 1355
BsrDI GCAATG 2 cut(s) 391, 1074
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 6 cut(s) 441, 505, 630, 1097, 1419, 1573
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 4 cut(s) 397, 889, 1168, 1378
BssT1I CCWWGG 3 cut(s) 397, 889, 1378
Bst2UI CCWGG 1 cut(s) 708
Bst4CI ACNGT 5 cut(s) 54, 88, 124, 824, 1630
Bst6I CTCTTC 3 cut(s) 1328, 1459, 1695
BstAPI GCANNNNNTGC 1 cut(s) 574
BstC8I GCNNGC 3 cut(s) 250, 487, 769
BstDEI CTNAG 4 cut(s) 772, 927, 1425, 1651
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 5 cut(s) 105, 211, 555, 912, 1469
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 2 cut(s) 83, 1492
BstMAI GTCTC 1 cut(s) 1355
BstMWI GCNNNNNNNGC 2 cut(s) 574, 1741
BstNI CCWGG 1 cut(s) 708
BstNSI RCATGY 1 cut(s) 839
BstSCI CCNGG 1 cut(s) 706
BstSFI CTRYAG 2 cut(s) 91, 1616
BstV1I GCAGC 5 cut(s) 349, 580, 751, 1030, 1085
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 781
BstXI CCANNNNNNTGG 1 cut(s) 326
BstYI RGATCY 1 cut(s) 781
Bsu15I ATCGAT 1 cut(s) 1148
Bsu36I CCTNAGG 1 cut(s) 1425
BsuI GTATCC 1 cut(s) 1704
BsuRI GGCC 4 cut(s) 284, 504, 711, 1167
BsuTUI ATCGAT 1 cut(s) 1148
BtgI CCRYGG 1 cut(s) 397
BtgZI GCGATG 1 cut(s) 1408
BtsCI GGATG 5 cut(s) 105, 211, 555, 912, 1469
BtsI GCAGTG 3 cut(s) 232, 243, 1315
BtsIMutI CAGTG 8 cut(s) 232, 243, 498, 623, 1009, 1297, 1315, 1566
BveI ACCTGC 1 cut(s) 1623
Cac8I GCNNGC 3 cut(s) 250, 487, 769
CciI TCATGA 1 cut(s) 306
CfoI GCGC 2 cut(s) 83, 1492
Cfr10I RCCGGY 1 cut(s) 248
ClaI ATCGAT 1 cut(s) 1148
CseI GACGC 2 cut(s) 179, 782
Csp6I GTAC 6 cut(s) 55, 661, 1256, 1404, 1467, 1626
CviQI GTAC 6 cut(s) 55, 661, 1256, 1404, 1467, 1626
DdeI CTNAG 4 cut(s) 772, 927, 1425, 1651
DraI TTTAAA 2 cut(s) 592, 751
DrdI GACNNNNNNGTC 1 cut(s) 1694
DriI GACNNNNNGTC 1 cut(s) 604
DseDI GACNNNNNNGTC 1 cut(s) 1694
EaeI YGGCCR 1 cut(s) 502
Eam1104I CTCTTC 3 cut(s) 1328, 1459, 1695
Eam1105I GACNNNNNGTC 1 cut(s) 604
EarI CTCTTC 3 cut(s) 1328, 1459, 1695
Ecl136II GAGCTC 1 cut(s) 98
Eco130I CCWWGG 3 cut(s) 397, 889, 1378
Eco24I GRGCYC 1 cut(s) 100
Eco31I GGTCTC 1 cut(s) 1355
Eco53kI GAGCTC 1 cut(s) 98
Eco81I CCTNAGG 1 cut(s) 1425
Eco88I CYCGRG 1 cut(s) 1169
EcoICRI GAGCTC 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 706
EcoT14I CCWWGG 3 cut(s) 397, 889, 1378
EcoT38I GRGCYC 1 cut(s) 100
ErhI CCWWGG 3 cut(s) 397, 889, 1378
FalI AAGNNNNNCTT 2 cut(s) 934, 966
FaqI GGGAC 1 cut(s) 740
FauNDI CATATG 1 cut(s) 1357
FbaI TGATCA 2 cut(s) 1273, 1312
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 5 cut(s) 338, 569, 765, 1044, 1099
FokI GGATG 5 cut(s) 92, 198, 562, 919, 1456
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 5 cut(s) 338, 569, 765, 1044, 1099
FspBI CTAG 1 cut(s) 1022
GlaI GCGC 2 cut(s) 82, 1491
GluI GCNGC 5 cut(s) 338, 569, 765, 1044, 1099
GsuI CTGGAG 2 cut(s) 1114, 1757
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 4 cut(s) 284, 504, 711, 1167
HapII CCGG 3 cut(s) 29, 249, 557
HgaI GACGC 2 cut(s) 179, 782
HhaI GCGC 2 cut(s) 83, 1492
Hin6I GCGC 2 cut(s) 81, 1490
HinP1I GCGC 2 cut(s) 81, 1490
HinfI GANTC 6 cut(s) 217, 817, 947, 1160, 1647, 1655
HpaII CCGG 3 cut(s) 29, 249, 557
HphI GGTGA 6 cut(s) 43, 812, 971, 1063, 1191, 1307
Hpy166II GTNNAC 3 cut(s) 34, 91, 1626
Hpy188I TCNGA 5 cut(s) 180, 216, 786, 1332, 1372
Hpy188III TCNNGA 7 cut(s) 262, 307, 557, 814, 1022, 1055, 1206
Hpy8I GTNNAC 3 cut(s) 34, 91, 1626
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 4 cut(s) 667, 907, 1269, 1293
HpyCH4III ACNGT 5 cut(s) 54, 88, 124, 824, 1630
HpyCH4IV ACGT 1 cut(s) 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 574, 1741
HpyF3I CTNAG 4 cut(s) 772, 927, 1425, 1651
HpySE526I ACGT 1 cut(s) 527
HspAI GCGC 2 cut(s) 81, 1490
Kpn2I TCCGGA 1 cut(s) 556
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Ksp22I TGATCA 2 cut(s) 1273, 1312
LmnI GCTCC 6 cut(s) 559, 652, 706, 850, 1095, 1497
Lsp1109I GCAGC 5 cut(s) 349, 580, 751, 1030, 1085
LweI GCATC 3 cut(s) 114, 1077, 1385
MaeI CTAG 1 cut(s) 1022
MaeII ACGT 1 cut(s) 527
MaeIII GTNAC 3 cut(s) 268, 959, 1597
MfeI CAATTG 1 cut(s) 572
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 1 cut(s) 100
MlsI TGGCCA 1 cut(s) 504
MluCI AATT 9 cut(s) 5, 572, 734, 867, 1012, 1176, 1185, 1551, 1683
MluNI TGGCCA 1 cut(s) 504
MlyI GAGTC 2 cut(s) 956, 1656
MmeI TCCRAC 1 cut(s) 514
Mox20I TGGCCA 1 cut(s) 504
MroI TCCGGA 1 cut(s) 556
MroNI GCCGGC 1 cut(s) 248
MscI TGGCCA 1 cut(s) 504
MseI TTAA 9 cut(s) 114, 420, 459, 591, 683, 750, 777, 873, 1748
MslI CAYNNNNRTG 5 cut(s) 324, 396, 414, 582, 642
Msp20I TGGCCA 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 1130
MspI CCGG 3 cut(s) 29, 249, 557
MspR9I CCNGG 1 cut(s) 708
MunI CAATTG 1 cut(s) 572
Mva1269I GAATGC 3 cut(s) 703, 841, 1732
MvaI CCWGG 1 cut(s) 708
MwoI GCNNNNNNNGC 2 cut(s) 574, 1741
NaeI GCCGGC 1 cut(s) 250
NcoI CCATGG 1 cut(s) 397
NdeI CATATG 1 cut(s) 1357
NgoMIV GCCGGC 1 cut(s) 248
NlaIV GGNNCC 2 cut(s) 555, 783
NmeAIII GCCGAG 1 cut(s) 1756
NmuCI GTSAC 2 cut(s) 268, 959
NspI RCATGY 1 cut(s) 839
PagI TCATGA 1 cut(s) 306
PaqCI CACCTGC 1 cut(s) 1623
PciI ACATGT 1 cut(s) 835
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 3 cut(s) 703, 841, 1732
PdiI GCCGGC 1 cut(s) 250
PfeI GAWTC 4 cut(s) 217, 817, 1160, 1655
PkrI GCNGC 5 cut(s) 339, 570, 766, 1045, 1100
PleI GAGTC 2 cut(s) 955, 1655
PpsI GAGTC 2 cut(s) 955, 1655
PscI ACATGT 1 cut(s) 835
Psp124BI GAGCTC 1 cut(s) 100
Psp1406I AACGTT 1 cut(s) 527
Psp6I CCWGG 1 cut(s) 706
PspGI CCWGG 1 cut(s) 706
PspN4I GGNNCC 2 cut(s) 555, 783
PstI CTGCAG 1 cut(s) 1620
PsuI RGATCY 1 cut(s) 781
PvuII CAGCTG 1 cut(s) 1130
RsaI GTAC 6 cut(s) 56, 662, 1257, 1405, 1468, 1627
RsaNI GTAC 6 cut(s) 55, 661, 1256, 1404, 1467, 1626
RseI CAYNNNNRTG 5 cut(s) 324, 396, 414, 582, 642
SacI GAGCTC 1 cut(s) 100
SaqAI TTAA 9 cut(s) 114, 420, 459, 591, 683, 750, 777, 873, 1748
SatI GCNGC 5 cut(s) 338, 569, 765, 1044, 1099
SchI GAGTC 2 cut(s) 956, 1656
ScrFI CCNGG 1 cut(s) 708
SduI GDGCHC 1 cut(s) 100
SfaNI GCATC 3 cut(s) 114, 1077, 1385
SfcI CTRYAG 2 cut(s) 91, 1616
SmiMI CAYNNNNRTG 5 cut(s) 324, 396, 414, 582, 642
SmlI CTYRAG 2 cut(s) 146, 224
SmoI CTYRAG 2 cut(s) 146, 224
Sse9I AATT 9 cut(s) 5, 572, 734, 867, 1012, 1176, 1185, 1551, 1683
SsiI CCGC 4 cut(s) 365, 803, 1473, 1708
SspMI CTAG 1 cut(s) 1022
SstI GAGCTC 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 706
StyI CCWWGG 3 cut(s) 397, 889, 1378
TaaI ACNGT 5 cut(s) 54, 88, 124, 824, 1630
TaiI ACGT 1 cut(s) 530
TaqI TCGA 5 cut(s) 141, 495, 1148, 1675, 1698
TaqII GACCGA 1 cut(s) 56
TasI AATT 9 cut(s) 5, 572, 734, 867, 1012, 1176, 1185, 1551, 1683
TfiI GAWTC 4 cut(s) 217, 817, 1160, 1655
Tru1I TTAA 9 cut(s) 114, 420, 459, 591, 683, 750, 777, 873, 1748
Tru9I TTAA 9 cut(s) 114, 420, 459, 591, 683, 750, 777, 873, 1748
TscAI CASTG 8 cut(s) 239, 250, 505, 630, 1009, 1297, 1315, 1573
TseFI GTSAC 2 cut(s) 268, 959
TseI GCWGC 5 cut(s) 337, 568, 764, 1043, 1098
Tsp45I GTSAC 2 cut(s) 268, 959
TspDTI ATGAA 4 cut(s) 323, 398, 686, 1344
TspGWI ACGGA 1 cut(s) 1595
TspRI CASTG 8 cut(s) 239, 250, 505, 630, 1009, 1297, 1315, 1573
XapI RAATTY 3 cut(s) 5, 734, 1012
XbaI TCTAGA 1 cut(s) 1021
XceI RCATGY 1 cut(s) 839
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 1 cut(s) 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.