Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001835

Physical Location & Seq

Genomic Coordinates Reverse (-)

1924214 .. 1929918

Gene Structure 5705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1032000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGAGTATGAATCAAATAAACGATTTCCTTTGGATGCAAAAGATTATAAGTTATATGAAGAAGTTGGTGAAGGTGTCAGTGCTTCCGTGTACAGGGCACTCTGTATACCACTTAATGAGATAGTTGCTATCAAGGTTCTTGATCTGGAAAAGTGTAACAATGACCTGGATGGTATCCGACGGGAGGTTAATACAATGACTTTGATTAAACACCAAAATTTAGTACGAGCACATTGTTCATTCACTGCTGGCCACAGCCTTTGGGTCGTGATGCCATATATGGCTGGAGGGTCCTGCCAGCATATAATGAAATCTTCTTATCCTGAAGGGTTTGAAGAGCCTGTTATTGCGACTTTATTGAACGAAGTTCTCAAAGCTCTTGTGTATCTTCATGCTCAGGGCGACATCCATAGAGATGTGAAGGCTGGGAATATTTTAATTGACTCTAATGGTGCCGTCAAGTTAGCAGACTTTGGAGTGTCCGCATGCATGTTCGATGCTGGTGATAGACAACGTTCCAGAAATACGTTTGTTGGAACTCCATGCTGGATGGCTCCTGAAGTTATGCAGGAGTTACCTGGATATGACTTCAAAGCAGACATCTGGTCATTTGGAATAACAGCGCTTGAGCTTGCTCATGGTCATGCCCCATTTTCTAAGTATCCGCCCATGAAAGTTTTGCTTATGACTTTACAAAATGCACCCCCAGGCCTTGACTATGAAAGAGACAAAAGATTTTCAAAGTCTTTCAAAGGGATGGTAGGTGCTTGCTTAGTGAAGGATCCAAAGAAGCGTCCATCTTCAGAGAAGCTTTTGAAGCACCATTTTTTCAAACATGCACGACCTGTTGAATATCTGTCGCGAACCATTCTTGAGGGTCTTTCTCCATTGGGTGAACGTTTCAGGATGCTGAAGGCAAAAGAATCCGATCTTCTTGTGCCGAATAAGGCTCTCTATGGGGATGAACATTTATCACAGCAAGAGTATATCCGAGGAATCAGTGCCTGGAATTTCAACATTGAGGATTTAAAAAATCAGGCTGCCCTTATTGAAGAGGATGGCATGCCCAATGCATCAAGTGAGAAGCAAATTGACAAGGACGAGGATGTTAGTTTTCCAGCGAAGAGGGAAGCCACTGAGATGGAAATCCAAGCAAATGCTGTGCCTTACGAGGAGGATGGCTTCAACGATCTGCATGATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

402

Amino Acids

45.19

Weight (kDa)

5.6

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	16 - 277	7.8e-59	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	17 - 273	3.6e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14720 AT5G14720
fragaria_vesca	FvH4_4g34360 FvH4_4g34360 FvH4_6g50820 FvH4_6g50820 FvH4_6g50820 FvH4_6g50820 FvH4_6g50820
malus_domestica	MD09G1031900.v1.1 MD09G1032000.v1.1 MD16G1093600.v1.1 MD17G1033700.v1.1
prunus_persica	Prupe.1G252900_v2.0.a1 Prupe.1G252900_v2.0.a1 Prupe.1G252900_v2.0.a1 Prupe.1G252900_v2.0.a1 Prupe.1G252900_v2.0.a1 Prupe.3G286000_v2.0.a1 Prupe.3G286000_v2.0.a1 Prupe.3G286000_v2.0.a1 Prupe.3G286000_v2.0.a1
pyrus_communis	pycom111g02520 pycom16g07960 pycom17g03080
rosa_chinensis	RchiOBHm_Chr2g0172211 RchiOBHm_Chr4g0443771
rosa_laevigata	RLG00000005891 RLG00000022093
rosa_multiflora	Rmu_co8491651.1_g000001 Rmu_ssc0000252.1_g000052
rosa_roxburghii	Rroxscaffold_2G00080080 Rroxscaffold_5G00384340
rosa_rugosa	Rorug02G0557300 Rorug02G0557400 Rorug04G0347100
rosa_samantha	Rh2AG632700 Rh2BG646300 Rh2CG612900 Rh2DG653800 Rh2DG660900 Rh4AG407400 Rh4BG418300 Rh4CG432400 Rh4DG413600
rosa_wichuraiana	Rw2G052380 Rw4G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	48
AccB1I	GGYRCC	1 cut(s)	452
AccI	GTMKAC	1 cut(s)	106
AccII	CGCG	1 cut(s)	862
AciI	CCGC	2 cut(s)	483, 665
AclI	AACGTT	2 cut(s)	514, 898
AclWI	GGATC	2 cut(s)	776, 789
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	2 cut(s)	217, 1009
AcuI	CTGAAG	4 cut(s)	345, 579, 786, 932
AfaI	GTAC	2 cut(s)	92, 225
AfeI	AGCGCT	1 cut(s)	624
AfiI	CCNNNNNNNGG	2 cut(s)	93, 184
AhdI	GACNNNNNGTC	1 cut(s)	604
AjnI	CCWGG	4 cut(s)	165, 577, 706, 1004
AluBI	AGCT	3 cut(s)	377, 631, 811
AluI	AGCT	3 cut(s)	377, 631, 811
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	720
AlwI	GGATC	2 cut(s)	776, 789
AlwNI	CAGNNNCTG	1 cut(s)	1005
Aor51HI	AGCGCT	1 cut(s)	624
AoxI	GGCC	2 cut(s)	250, 709
ApeKI	GCWGC	1 cut(s)	1040
ApoI	RAATTY	2 cut(s)	217, 1009
AspLEI	GCGC	1 cut(s)	625
AspS9I	GGNCC	1 cut(s)	291
AsuHPI	GGTGA	3 cut(s)	80, 515, 905
AvaII	GGWCC	1 cut(s)	291
BaeGI	GKGCMC	1 cut(s)	100
BalI	TGGCCA	1 cut(s)	252
BamHI	GGATCC	1 cut(s)	781
BanI	GGYRCC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	1027
BccI	CCATC	7 cut(s)	164, 544, 751, 805, 1052, 1135, 1172
BceAI	ACGGC	1 cut(s)	440
BciT130I	CCWGG	4 cut(s)	167, 579, 708, 1006
BciVI	GTATCC	2 cut(s)	185, 672
BcoDI	GTCTC	1 cut(s)	720
BfoI	RGCGCY	1 cut(s)	626
BfuI	GTATCC	2 cut(s)	185, 672
BisI	GCNGC	1 cut(s)	1041
BlsI	GCNGC	1 cut(s)	1042
Bme1390I	CCNGG	4 cut(s)	167, 579, 708, 1006
Bme18I	GGWCC	1 cut(s)	291
BmeRI	GACNNNNNGTC	1 cut(s)	604
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	4 cut(s)	292, 454, 555, 783
BmrFI	CCNGG	4 cut(s)	167, 579, 708, 1006
BmsI	GCATC	5 cut(s)	25, 261, 487, 897, 1082
BpmI	CTGGAG	1 cut(s)	306
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	2 cut(s)	647, 893
BsaBI	GATNNNNATC	1 cut(s)	1145
BsaJI	CCNNGG	2 cut(s)	706, 991
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 184
Bse8I	GATNNNNATC	1 cut(s)	1145
BseBI	CCWGG	4 cut(s)	167, 579, 708, 1006
BseDI	CCNNGG	2 cut(s)	706, 991
BseJI	GATNNNNATC	1 cut(s)	1145
BseLI	CCNNNNNNNGG	2 cut(s)	93, 184
BseMII	CTCAG	2 cut(s)	410, 1128
BseRI	GAGGAG	1 cut(s)	1187
BseSI	GKGCMC	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	1027
BseYI	CCCAGC	1 cut(s)	425
Bsh1236I	CGCG	1 cut(s)	862
BshFI	GGCC	2 cut(s)	252, 711
BshNI	GGYRCC	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	93, 184
BsmAI	GTCTC	1 cut(s)	720
BsnI	GGCC	2 cut(s)	252, 711
Bsp1286I	GDGCHC	2 cut(s)	100, 232
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	4 cut(s)	142, 781, 928, 1189
Bsp68I	TCGCGA	1 cut(s)	862
BspACI	CCGC	2 cut(s)	483, 665
BspANI	GGCC	2 cut(s)	252, 711
BspCNI	CTCAG	2 cut(s)	409, 1129
BspFNI	CGCG	1 cut(s)	862
BspLI	GGNNCC	4 cut(s)	292, 454, 555, 783
BspPI	GGATC	2 cut(s)	776, 789
BspQI	GCTCTTC	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	452
BsrGI	TGTACA	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	706, 991
BssMI	GATC	4 cut(s)	142, 781, 928, 1189
BssNAI	GTATAC	1 cut(s)	107
Bst1107I	GTATAC	1 cut(s)	107
Bst2UI	CCWGG	4 cut(s)	167, 579, 708, 1006
Bst6I	CTCTTC	3 cut(s)	330, 1047, 1118
BstAUI	TGTACA	1 cut(s)	90
BstC8I	GCNNGC	6 cut(s)	250, 299, 487, 633, 769, 1064
BstDEI	CTNAG	4 cut(s)	396, 657, 772, 1137
BstFNI	CGCG	1 cut(s)	862
BstH2I	RGCGCY	1 cut(s)	626
BstHHI	GCGC	1 cut(s)	625
BstKTI	GATC	4 cut(s)	145, 784, 931, 1192
BstMAI	GTCTC	1 cut(s)	720
BstMBI	GATC	4 cut(s)	142, 781, 928, 1189
BstMWI	GCNNNNNNNGC	1 cut(s)	817
BstNI	CCWGG	4 cut(s)	167, 579, 708, 1006
BstNSI	RCATGY	4 cut(s)	489, 493, 839, 1066
BstSCI	CCNGG	4 cut(s)	165, 577, 706, 1004
BstSLI	GKGCMC	1 cut(s)	100
BstUI	CGCG	1 cut(s)	862
BstV1I	GCAGC	1 cut(s)	1027
BstX2I	RGATCY	1 cut(s)	781
BstXI	CCANNNNNNTGG	1 cut(s)	1141
BstYI	RGATCY	1 cut(s)	781
BstZ17I	GTATAC	1 cut(s)	107
BsuI	GTATCC	2 cut(s)	185, 672
BsuRI	GGCC	2 cut(s)	252, 711
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	4 cut(s)	85, 243, 1006, 1134
BtuMI	TCGCGA	1 cut(s)	862
Cac8I	GCNNGC	6 cut(s)	250, 299, 487, 633, 769, 1064
CaiI	CAGNNNCTG	1 cut(s)	1005
CfoI	GCGC	1 cut(s)	625
Cfr13I	GGNCC	1 cut(s)	291
CseI	GACGC	1 cut(s)	782
Csp6I	GTAC	2 cut(s)	91, 224
CspCI	CAANNNNNGTGG	2 cut(s)	242, 277
CviQI	GTAC	2 cut(s)	91, 224
DdeI	CTNAG	4 cut(s)	396, 657, 772, 1137
DpnI	GATC	4 cut(s)	144, 783, 930, 1191
DpnII	GATC	4 cut(s)	142, 781, 928, 1189
DraI	TTTAAA	1 cut(s)	1029
DriI	GACNNNNNGTC	1 cut(s)	604
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	3 cut(s)	330, 1047, 1118
Eam1105I	GACNNNNNGTC	1 cut(s)	604
EarI	CTCTTC	3 cut(s)	330, 1047, 1118
EciI	GGCGGA	1 cut(s)	654
Eco147I	AGGCCT	1 cut(s)	711
Eco47I	GGWCC	1 cut(s)	291
Eco47III	AGCGCT	1 cut(s)	624
Eco57I	CTGAAG	4 cut(s)	345, 579, 786, 932
EcoO109I	RGGNCCY	1 cut(s)	291
EcoRII	CCWGG	4 cut(s)	165, 577, 706, 1004
EcoT22I	ATGCAT	2 cut(s)	491, 1075
FalI	AAGNNNNNCTT	2 cut(s)	666, 698
FblI	GTMKAC	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	1041
Fsp4HI	GCNGC	1 cut(s)	1041
GlaI	GCGC	1 cut(s)	624
GluI	GCNGC	1 cut(s)	1041
GsaI	CCCAGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	306
HaeII	RGCGCY	1 cut(s)	626
HaeIII	GGCC	2 cut(s)	252, 711
HgaI	GACGC	1 cut(s)	782
HhaI	GCGC	1 cut(s)	625
Hin6I	GCGC	1 cut(s)	623
HinP1I	GCGC	1 cut(s)	623
HindIII	AAGCTT	1 cut(s)	809
HinfI	GANTC	4 cut(s)	11, 443, 923, 996
HphI	GGTGA	3 cut(s)	80, 515, 905
Hpy166II	GTNNAC	3 cut(s)	91, 107, 896
Hpy188I	TCNGA	4 cut(s)	179, 805, 928, 992
Hpy188III	TCNNGA	9 cut(s)	140, 146, 268, 323, 519, 557, 861, 872, 904
Hpy8I	GTNNAC	3 cut(s)	91, 107, 896
Hpy99I	CGWCG	1 cut(s)	183
HpyAV	CCTTC	5 cut(s)	65, 320, 415, 772, 907
HpyCH4IV	ACGT	3 cut(s)	514, 527, 898
HpyCH4V	TGCA	7 cut(s)	38, 489, 568, 701, 839, 1073, 1195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	817
HpyF3I	CTNAG	4 cut(s)	396, 657, 772, 1137
HpySE526I	ACGT	3 cut(s)	514, 527, 898
HspAI	GCGC	1 cut(s)	623
Kzo9I	GATC	4 cut(s)	142, 781, 928, 1189
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	1 cut(s)	1027
LweI	GCATC	5 cut(s)	25, 261, 487, 897, 1082
MaeII	ACGT	3 cut(s)	514, 527, 898
MaeIII	GTNAC	2 cut(s)	155, 573
MalI	GATC	4 cut(s)	144, 783, 930, 1191
MboI	GATC	4 cut(s)	142, 781, 928, 1189
MboII	GAAGA	8 cut(s)	71, 306, 347, 380, 792, 923, 1064, 1135
MflI	RGATCY	1 cut(s)	781
MhlI	GDGCHC	2 cut(s)	100, 232
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	4 cut(s)	217, 438, 1009, 1089
MluNI	TGGCCA	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	2 cut(s)	202, 514
Mox20I	TGGCCA	1 cut(s)	252
Mph1103I	ATGCAT	2 cut(s)	491, 1075
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	5 cut(s)	114, 189, 207, 437, 1028
MslI	CAYNNNNRTG	3 cut(s)	414, 642, 1139
Msp20I	TGGCCA	1 cut(s)	252
MspR9I	CCNGG	4 cut(s)	167, 579, 708, 1006
MvaI	CCWGG	4 cut(s)	167, 579, 708, 1006
MvnI	CGCG	1 cut(s)	862
MwoI	GCNNNNNNNGC	1 cut(s)	817
NdeII	GATC	4 cut(s)	142, 781, 928, 1189
NlaIV	GGNNCC	4 cut(s)	292, 454, 555, 783
NruI	TCGCGA	1 cut(s)	862
NsiI	ATGCAT	2 cut(s)	491, 1075
NspI	RCATGY	4 cut(s)	489, 493, 839, 1066
PaeI	GCATGC	2 cut(s)	489, 1066
PceI	AGGCCT	1 cut(s)	711
PciSI	GCTCTTC	1 cut(s)	330
PfeI	GAWTC	3 cut(s)	11, 923, 996
PkrI	GCNGC	1 cut(s)	1042
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
PpuMI	RGGWCCY	1 cut(s)	291
PsiI	TTATAA	1 cut(s)	48
Psp1406I	AACGTT	2 cut(s)	514, 898
Psp5II	RGGWCCY	1 cut(s)	291
Psp6I	CCWGG	4 cut(s)	165, 577, 706, 1004
PspFI	CCCAGC	1 cut(s)	425
PspGI	CCWGG	4 cut(s)	165, 577, 706, 1004
PspN4I	GGNNCC	4 cut(s)	292, 454, 555, 783
PspPI	GGNCC	1 cut(s)	291
PspPPI	RGGWCCY	1 cut(s)	291
PstNI	CAGNNNCTG	1 cut(s)	1005
PsuI	RGATCY	1 cut(s)	781
RruI	TCGCGA	1 cut(s)	862
RsaI	GTAC	2 cut(s)	92, 225
RsaNI	GTAC	2 cut(s)	91, 224
RseI	CAYNNNNRTG	3 cut(s)	414, 642, 1139
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	5 cut(s)	114, 189, 207, 437, 1028
SatI	GCNGC	1 cut(s)	1041
Sau3AI	GATC	4 cut(s)	142, 781, 928, 1189
Sau96I	GGNCC	1 cut(s)	291
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	4 cut(s)	167, 579, 708, 1006
SduI	GDGCHC	2 cut(s)	100, 232
SfaNI	GCATC	5 cut(s)	25, 261, 487, 897, 1082
SinI	GGWCC	1 cut(s)	291
SmiMI	CAYNNNNRTG	3 cut(s)	414, 642, 1139
SmlI	CTYRAG	2 cut(s)	626, 872
SmoI	CTYRAG	2 cut(s)	626, 872
SphI	GCATGC	2 cut(s)	489, 1066
Sse9I	AATT	4 cut(s)	217, 438, 1009, 1089
SseBI	AGGCCT	1 cut(s)	711
SsiI	CCGC	2 cut(s)	483, 665
SspI	AATATT	1 cut(s)	433
StuI	AGGCCT	1 cut(s)	711
StyD4I	CCNGG	4 cut(s)	165, 577, 706, 1004
TaiI	ACGT	3 cut(s)	517, 530, 901
TaqI	TCGA	1 cut(s)	495
TasI	AATT	4 cut(s)	217, 438, 1009, 1089
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	3 cut(s)	11, 923, 996
Tru1I	TTAA	5 cut(s)	114, 189, 207, 437, 1028
Tru9I	TTAA	5 cut(s)	114, 189, 207, 437, 1028
TscAI	CASTG	4 cut(s)	85, 250, 1006, 1141
TseI	GCWGC	1 cut(s)	1040
TspDTI	ATGAA	8 cut(s)	24, 72, 228, 323, 380, 686, 735, 978
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	4 cut(s)	85, 250, 1006, 1141
VpaK11BI	GGWCC	1 cut(s)	291
XapI	RAATTY	2 cut(s)	217, 1009
XceI	RCATGY	4 cut(s)	489, 493, 839, 1066
XmiI	GTMKAC	1 cut(s)	106
Zsp2I	ATGCAT	2 cut(s)	491, 1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.