Rw4G034990

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
61870543 .. 61875409
4867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G034990.1

Sequence Viewer

Length: 1776 bp
ATGGAATTTTTATTAAACAAGAAGAACTTTCCGTTGAATCACAAAGACTACACGTTGTACGAAGAAGTTGGTCAGGGTGTGAGTGCCACTGTGTACAGAGCTCTCTGCATCCCACTTGATGAAATTGTTGCCATCAAAGTTATAGACCTAGAGAAATGCAACAATGATATGGATATGATTCGACGAGAAGTACAGACTATGATCTTGCTGGATCATCCTAATCTGCTGAAAGCACACTGCTCTTTCACTGCTACCAGGAGTCTGTGGATTGTCATGCCTTACATGGCCGCCGGTTCCTGTCTTCACATCATTAAGTCTGATCATCCCAATGGTTTTGAAGAGCATACCATCGTGACATTGTTGTATGGGGTCATCAAAGCTCTTGCTTATCTACATTCCCATGGCTACATTCACAGAGATGTTAAGGCTGGAAATATACTGATTAATTCAAAAGGTGCAGTTAAGTTAGCAGACTTTGGTGTTTCAACGAGCTTGTTTGATTCTGGCAATAGACTGCAGTCAAAAAACACCTTTGTCGGAACTCCATGCTGGATGGCTCCAGAAGTTATGCAGCAATTGCATGGATACGACTTCAAAGCAGACATCTGGTCATTTGGGATAACAGCACTAGAACTTGCTCATGGTCATGCTCCATTCTCTAAGTATCCACCAATGAAGGTTTTGCTGATGACCTTACAAAATGCGCCTCCTGGCCTTGACTATGAAAGGGACAAGCGATTTTCAAAGTCCTTTAAAGAGATAGTAGCTGCTTGCTTAGTAAAGGATCCAAAGAAGCGTCCTACTGCAGAGAAGCTTTTGAAGCACCGTCTCTTCAAGCATGCACGTTCAAAAGAATTTATAGTTCGGACAATTCTTGATGGCCTTTGTCCCCTTGGCGATCGATTTAGAATGTTGAAGCAAAAAGAGGCTGAATTCTTTGCACAAAATGAGGCTACGTATGGTGACGAGCATTTATCACAGCAAAAGTATATACGGGGGATCAGTGCATGGAATTTTGATCTAGAGGAATTAAAAAGACAGGCTGCTCTTATTCAGGATGATGATGGCATCGCATTTGCAGAAAATCAAGAGTGGATCTGCAAACAGAAGGGTGAAATTGATGTCTCAGTTGATCTATTAAATAGATCAACATGGAAAGATGCGGACTTCAAAAAATTTGAAGAACCTGTTGACTCATCAAAATTGTGGCAAGGAGAAAAGAGTAGCTATTTTGGAGTTGATAATTTGGAGAGAAGTTTCTCTATGCCAAGAAATATCTATTCTGAAGCTCCAAATGATCAGTTGACACATCATCAGAAGAGAGATAGTTGTTTACATGAGACAGCATTAGATGAACTCGGGGTCCAATGTAAGGGGAAATTCAAAGTCAGAGTGCCAGATTTGAGTCAAAAGGACACGCCAAATGGCTTTACTAGACCATATATTGGGGAATCAGTAGATTCTGTAAACGGTCCAGCTGCTTGTGTCGTTCCTGCGCTCCATTGCATTCTGCAACAAAATGCCATGCAAATGGAAGAAACAATGAGATTGATTGAAGTTGTAGATCAAATCACAGGCAATCACGCAGAGCTCGCAGAGGCAGTAACAAGTAAAAAGCAGATGCAGTTGTCTTTAGCTTCTGCAAGGGAGAGAGTCCTAGAAGCTCATGTGATTTCTATTGAAAATAGGATTGAGAAACTAGTTGTCGAGTTGCAGATACAAAAGATGAAAAATACCAAGCTGGAGAGACAACTGAGACTAGTTGACAAGGAGTAG

Protein Analysis

591

Amino Acids

67.29

Weight (kDa)

6.73

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 17 - 278 9.1e-62 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 18 - 274 1e-47 Protein tyrosine and serine/threonine kinase
Kinase-like PF14531 116 - 221 2.1e-06 Kinase-like
Pkinase_fungal PF17667 117 - 201 9.7e-07 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1445
AciI CCGC 2 cut(s) 288, 1163
AclWI GGATC 5 cut(s) 219, 779, 792, 1007, 1103
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 6 cut(s) 5, 854, 932, 1012, 1175, 1379
AcuI CTGAAG 1 cut(s) 1305
AfaI GTAC 3 cut(s) 59, 95, 192
AfiI CCNNNNNNNGG 2 cut(s) 1372, 1445
AflIII ACRYGT 1 cut(s) 51
AhdI GACNNNNNGTC 1 cut(s) 607
AhlI ACTAGT 2 cut(s) 1699, 1759
AjnI CCWGG 2 cut(s) 254, 709
AloI GAACNNNNNNTCC 2 cut(s) 1347, 1379
Alw21I GWGCWC 2 cut(s) 103, 1593
Alw26I GTCTC 5 cut(s) 833, 1129, 1334, 1741, 1750
AlwI GGATC 5 cut(s) 219, 779, 792, 1007, 1103
Ama87I CYCGRG 1 cut(s) 1358
AoxI GGCC 3 cut(s) 285, 712, 880
ApeKI GCWGC 4 cut(s) 571, 767, 1043, 1478
ApoI RAATTY 6 cut(s) 5, 854, 932, 1012, 1175, 1379
AseI ATTAAT 1 cut(s) 444
AspLEI GCGC 2 cut(s) 706, 1498
AspS9I GGNCC 2 cut(s) 1363, 1472
AsuHPI GGTGA 2 cut(s) 974, 1124
AvaI CYCGRG 1 cut(s) 1358
AvaII GGWCC 2 cut(s) 1363, 1472
BamHI GGATCC 1 cut(s) 784
BanII GRGCYC 2 cut(s) 103, 1593
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 2 cut(s) 103, 1593
BbvI GCAGC 4 cut(s) 583, 754, 1030, 1465
BccI CCATC 5 cut(s) 140, 356, 547, 872, 1058
BciT130I CCWGG 2 cut(s) 256, 711
BciVI GTATCC 2 cut(s) 578, 675
BclI TGATCA 2 cut(s) 319, 1297
BcoDI GTCTC 5 cut(s) 833, 1129, 1334, 1741, 1750
BcuI ACTAGT 2 cut(s) 1699, 1759
BfaI CTAG 7 cut(s) 149, 629, 1022, 1434, 1658, 1700, 1760
BfmI CTRYAG 2 cut(s) 515, 804
BfuI GTATCC 2 cut(s) 578, 675
BisI GCNGC 5 cut(s) 288, 572, 768, 1044, 1479
BlsI GCNGC 5 cut(s) 289, 573, 769, 1045, 1480
Bme1390I CCNGG 2 cut(s) 256, 711
Bme18I GGWCC 2 cut(s) 1363, 1472
BmeRI GACNNNNNGTC 1 cut(s) 607
BmeT110I CYCGRG 1 cut(s) 1358
BmgT120I GGNCC 2 cut(s) 1363, 1472
BmiI GGNNCC 4 cut(s) 295, 558, 786, 1364
BmrFI CCNGG 2 cut(s) 256, 711
BmsI GCATC 4 cut(s) 117, 1077, 1150, 1611
BoxI GACNNNNGTC 1 cut(s) 517
BpiI GAAGAC 1 cut(s) 293
BpmI CTGGAG 2 cut(s) 543, 1763
Bsa29I ATCGAT 1 cut(s) 901
BsaAI YACGTR 1 cut(s) 957
BsaJI CCNNGG 2 cut(s) 400, 892
Bsc4I CCNNNNNNNGG 2 cut(s) 1372, 1445
Bse118I RCCGGY 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 1501
BseBI CCWGG 2 cut(s) 256, 711
BseCI ATCGAT 1 cut(s) 901
BseDI CCNNGG 2 cut(s) 400, 892
BseGI GGATG 5 cut(s) 108, 214, 322, 558, 1063
BseLI CCNNNNNNNGG 2 cut(s) 1372, 1445
BseMI GCAATG 1 cut(s) 1501
BseMII CTCAG 2 cut(s) 1140, 1745
BseXI GCAGC 4 cut(s) 583, 754, 1030, 1465
BsgI GTGCAG 1 cut(s) 477
Bsh1285I CGRYCG 1 cut(s) 901
BshFI GGCC 3 cut(s) 287, 714, 882
BshVI ATCGAT 1 cut(s) 901
BsiEI CGRYCG 1 cut(s) 901
BsiHKAI GWGCWC 2 cut(s) 103, 1593
BsiHKCI CYCGRG 1 cut(s) 1358
BsiSI CCGG 1 cut(s) 291
BslFI GGGAC 2 cut(s) 743, 873
BslI CCNNNNNNNGG 2 cut(s) 1372, 1445
BsmAI GTCTC 5 cut(s) 833, 1129, 1334, 1741, 1750
BsmBI CGTCTC 1 cut(s) 833
BsmFI GGGAC 2 cut(s) 743, 873
BsmI GAATGC 1 cut(s) 1506
BsnI GGCC 3 cut(s) 287, 714, 882
BsoBI CYCGRG 1 cut(s) 1358
Bsp1286I GDGCHC 2 cut(s) 103, 1593
Bsp1407I TGTACA 1 cut(s) 93
Bsp19I CCATGG 1 cut(s) 400
BspACI CCGC 2 cut(s) 288, 1163
BspANI GGCC 3 cut(s) 287, 714, 882
BspCNI CTCAG 2 cut(s) 1139, 1746
BspDI ATCGAT 1 cut(s) 901
BspLI GGNNCC 4 cut(s) 295, 558, 786, 1364
BspMAI CTGCAG 2 cut(s) 519, 808
BspPI GGATC 5 cut(s) 219, 779, 792, 1007, 1103
BspQI GCTCTTC 1 cut(s) 333
BsrDI GCAATG 1 cut(s) 1501
BsrFI RCCGGY 1 cut(s) 290
BsrGI TGTACA 1 cut(s) 93
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 400, 892
BssT1I CCWWGG 2 cut(s) 400, 892
Bst2UI CCWGG 2 cut(s) 256, 711
Bst4CI ACNGT 3 cut(s) 91, 827, 1472
Bst6I CTCTTC 3 cut(s) 333, 836, 1313
BstAPI GCANNNNNTGC 1 cut(s) 577
BstAUI TGTACA 1 cut(s) 93
BstBAI YACGTR 1 cut(s) 957
BstC8I GCNNGC 3 cut(s) 772, 840, 1593
BstDEI CTNAG 4 cut(s) 660, 775, 1126, 1754
BstDSI CCRYGG 1 cut(s) 400
BstF5I GGATG 5 cut(s) 108, 214, 322, 558, 1063
BstHHI GCGC 2 cut(s) 706, 1498
BstMAI GTCTC 5 cut(s) 833, 1129, 1334, 1741, 1750
BstMCI CGRYCG 1 cut(s) 901
BstMWI GCNNNNNNNGC 3 cut(s) 577, 820, 1592
BstNI CCWGG 2 cut(s) 256, 711
BstNSI RCATGY 1 cut(s) 842
BstPAI GACNNNNGTC 1 cut(s) 517
BstSCI CCNGG 2 cut(s) 254, 709
BstSFI CTRYAG 2 cut(s) 515, 804
BstSNI TACGTA 1 cut(s) 957
BstV1I GCAGC 4 cut(s) 583, 754, 1030, 1465
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 2 cut(s) 784, 1095
BstXI CCANNNNNNTGG 1 cut(s) 1531
BstYI RGATCY 2 cut(s) 784, 1095
Bsu15I ATCGAT 1 cut(s) 901
BsuI GTATCC 2 cut(s) 578, 675
BsuRI GGCC 3 cut(s) 287, 714, 882
BsuTUI ATCGAT 1 cut(s) 901
BtgI CCRYGG 1 cut(s) 400
BtgZI GCGATG 1 cut(s) 1054
BtsCI GGATG 5 cut(s) 108, 214, 322, 558, 1063
BtsI GCAGTG 2 cut(s) 235, 246
BtsIMutI CAGTG 4 cut(s) 87, 235, 246, 1009
Cac8I GCNNGC 3 cut(s) 772, 840, 1593
CfoI GCGC 2 cut(s) 706, 1498
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 1363, 1472
ClaI ATCGAT 1 cut(s) 901
CseI GACGC 1 cut(s) 785
Csp6I GTAC 3 cut(s) 58, 94, 191
CviQI GTAC 3 cut(s) 58, 94, 191
DdeI CTNAG 4 cut(s) 660, 775, 1126, 1754
DraI TTTAAA 1 cut(s) 754
DriI GACNNNNNGTC 1 cut(s) 607
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 3 cut(s) 333, 836, 1313
Eam1105I GACNNNNNGTC 1 cut(s) 607
EarI CTCTTC 3 cut(s) 333, 836, 1313
Ecl136II GAGCTC 2 cut(s) 101, 1591
Eco105I TACGTA 1 cut(s) 957
Eco130I CCWWGG 2 cut(s) 400, 892
Eco24I GRGCYC 2 cut(s) 103, 1593
Eco47I GGWCC 2 cut(s) 1363, 1472
Eco53kI GAGCTC 2 cut(s) 101, 1591
Eco57I CTGAAG 1 cut(s) 1305
Eco88I CYCGRG 1 cut(s) 1358
EcoICRI GAGCTC 2 cut(s) 101, 1591
EcoRI GAATTC 1 cut(s) 932
EcoRII CCWGG 2 cut(s) 254, 709
EcoT14I CCWWGG 2 cut(s) 400, 892
EcoT38I GRGCYC 2 cut(s) 103, 1593
ErhI CCWWGG 2 cut(s) 400, 892
Esp3I CGTCTC 1 cut(s) 833
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FaqI GGGAC 2 cut(s) 743, 873
FbaI TGATCA 2 cut(s) 319, 1297
Fnu4HI GCNGC 5 cut(s) 288, 572, 768, 1044, 1479
FokI GGATG 5 cut(s) 95, 201, 309, 565, 1070
FriOI GRGCYC 2 cut(s) 103, 1593
Fsp4HI GCNGC 5 cut(s) 288, 572, 768, 1044, 1479
FspBI CTAG 7 cut(s) 149, 629, 1022, 1434, 1658, 1700, 1760
GlaI GCGC 2 cut(s) 705, 1497
GluI GCNGC 5 cut(s) 288, 572, 768, 1044, 1479
GsuI CTGGAG 2 cut(s) 543, 1763
HaeIII GGCC 3 cut(s) 287, 714, 882
HapII CCGG 1 cut(s) 291
HgaI GACGC 1 cut(s) 785
HhaI GCGC 2 cut(s) 706, 1498
Hin6I GCGC 2 cut(s) 704, 1496
HinP1I GCGC 2 cut(s) 704, 1496
HincII GTYRAC 3 cut(s) 1192, 1305, 1765
HindII GTYRAC 3 cut(s) 1192, 1305, 1765
HindIII AAGCTT 1 cut(s) 812
HinfI GANTC 9 cut(s) 37, 178, 259, 500, 1193, 1405, 1451, 1460, 1653
HpaII CCGG 1 cut(s) 291
HphI GGTGA 2 cut(s) 974, 1124
Hpy166II GTNNAC 6 cut(s) 94, 1192, 1305, 1334, 1468, 1765
Hpy188I TCNGA 6 cut(s) 319, 539, 867, 1285, 1317, 1391
Hpy188III TCNNGA 6 cut(s) 352, 560, 875, 1022, 1055, 1088
Hpy8I GTNNAC 6 cut(s) 94, 1192, 1305, 1334, 1468, 1765
Hpy99I CGWCG 1 cut(s) 186
HpyAV CCTTC 2 cut(s) 670, 1102
HpyCH4III ACNGT 3 cut(s) 91, 827, 1472
HpyCH4IV ACGT 3 cut(s) 53, 844, 956
HpyF10VI GCNNNNNNNGC 3 cut(s) 577, 820, 1592
HpyF3I CTNAG 4 cut(s) 660, 775, 1126, 1754
HpySE526I ACGT 3 cut(s) 53, 844, 956
HspAI GCGC 2 cut(s) 704, 1496
Ksp22I TGATCA 2 cut(s) 319, 1297
LguI GCTCTTC 1 cut(s) 333
LmnI GCTCC 4 cut(s) 562, 655, 1294, 1503
Lsp1109I GCAGC 4 cut(s) 583, 754, 1030, 1465
LweI GCATC 4 cut(s) 117, 1077, 1150, 1611
MaeI CTAG 7 cut(s) 149, 629, 1022, 1434, 1658, 1700, 1760
MaeII ACGT 3 cut(s) 53, 844, 956
MaeIII GTNAC 3 cut(s) 352, 962, 1603
MboII GAAGA 8 cut(s) 34, 74, 293, 350, 823, 1193, 1330, 1547
MfeI CAATTG 1 cut(s) 575
MflI RGATCY 2 cut(s) 784, 1095
MhlI GDGCHC 2 cut(s) 103, 1593
MlyI GAGTC 4 cut(s) 268, 1187, 1414, 1662
MmeI TCCRAC 1 cut(s) 517
MnlI CCTC 5 cut(s) 717, 919, 943, 1018, 1591
MseI TTAA 8 cut(s) 14, 312, 423, 444, 462, 753, 1031, 1139
MslI CAYNNNNRTG 5 cut(s) 327, 399, 417, 645, 1529
MspA1I CMGCKG 1 cut(s) 1478
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 2 cut(s) 256, 711
MunI CAATTG 1 cut(s) 575
Mva1269I GAATGC 1 cut(s) 1506
MvaI CCWGG 2 cut(s) 256, 711
MwoI GCNNNNNNNGC 3 cut(s) 577, 820, 1592
NcoI CCATGG 1 cut(s) 400
NlaIV GGNNCC 4 cut(s) 295, 558, 786, 1364
NmuCI GTSAC 2 cut(s) 352, 962
NspI RCATGY 1 cut(s) 842
PaeI GCATGC 1 cut(s) 842
PciSI GCTCTTC 1 cut(s) 333
PctI GAATGC 1 cut(s) 1506
PfeI GAWTC 5 cut(s) 37, 178, 500, 1451, 1460
PflMI CCANNNNNTGG 1 cut(s) 1445
PkrI GCNGC 5 cut(s) 289, 573, 769, 1045, 1480
Ple19I CGATCG 1 cut(s) 901
PleI GAGTC 4 cut(s) 267, 1187, 1413, 1661
PpsI GAGTC 4 cut(s) 267, 1187, 1413, 1661
Ppu21I YACGTR 1 cut(s) 957
PshAI GACNNNNGTC 1 cut(s) 517
PshBI ATTAAT 1 cut(s) 444
Psp124BI GAGCTC 2 cut(s) 103, 1593
Psp6I CCWGG 2 cut(s) 254, 709
PspGI CCWGG 2 cut(s) 254, 709
PspN4I GGNNCC 4 cut(s) 295, 558, 786, 1364
PspPI GGNCC 2 cut(s) 1363, 1472
PstI CTGCAG 2 cut(s) 519, 808
PsuI RGATCY 2 cut(s) 784, 1095
PvuI CGATCG 1 cut(s) 901
PvuII CAGCTG 1 cut(s) 1478
RsaI GTAC 3 cut(s) 59, 95, 192
RsaNI GTAC 3 cut(s) 58, 94, 191
RseI CAYNNNNRTG 5 cut(s) 327, 399, 417, 645, 1529
SacI GAGCTC 2 cut(s) 103, 1593
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 8 cut(s) 14, 312, 423, 444, 462, 753, 1031, 1139
SatI GCNGC 5 cut(s) 288, 572, 768, 1044, 1479
Sau96I GGNCC 2 cut(s) 1363, 1472
SchI GAGTC 4 cut(s) 268, 1187, 1414, 1662
ScrFI CCNGG 2 cut(s) 256, 711
SduI GDGCHC 2 cut(s) 103, 1593
SfaNI GCATC 4 cut(s) 117, 1077, 1150, 1611
SfcI CTRYAG 2 cut(s) 515, 804
SinI GGWCC 2 cut(s) 1363, 1472
SmiMI CAYNNNNRTG 5 cut(s) 327, 399, 417, 645, 1529
SnaBI TACGTA 1 cut(s) 957
SpeI ACTAGT 2 cut(s) 1699, 1759
SphI GCATGC 1 cut(s) 842
SsiI CCGC 2 cut(s) 288, 1163
SspMI CTAG 7 cut(s) 149, 629, 1022, 1434, 1658, 1700, 1760
SstI GAGCTC 2 cut(s) 103, 1593
StyD4I CCNGG 2 cut(s) 254, 709
StyI CCWWGG 2 cut(s) 400, 892
TaaI ACNGT 3 cut(s) 91, 827, 1472
TaiI ACGT 3 cut(s) 56, 847, 959
TaqI TCGA 3 cut(s) 181, 901, 1707
TatI WGTACW 2 cut(s) 93, 190
TauI GCSGC 1 cut(s) 290
TfiI GAWTC 5 cut(s) 37, 178, 500, 1451, 1460
Tru1I TTAA 8 cut(s) 14, 312, 423, 444, 462, 753, 1031, 1139
Tru9I TTAA 8 cut(s) 14, 312, 423, 444, 462, 753, 1031, 1139
TscAI CASTG 4 cut(s) 94, 242, 253, 1009
TseFI GTSAC 2 cut(s) 352, 962
TseI GCWGC 4 cut(s) 571, 767, 1043, 1478
Tsp45I GTSAC 2 cut(s) 352, 962
TspDTI ATGAA 5 cut(s) 135, 689, 738, 1368, 1742
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 4 cut(s) 94, 242, 253, 1009
Van91I CCANNNNNTGG 1 cut(s) 1445
VpaK11BI GGWCC 2 cut(s) 1363, 1472
VspI ATTAAT 1 cut(s) 444
XapI RAATTY 6 cut(s) 5, 854, 932, 1012, 1175, 1379
XbaI TCTAGA 1 cut(s) 1021
XceI RCATGY 1 cut(s) 842
XspI CTAG 7 cut(s) 149, 629, 1022, 1434, 1658, 1700, 1760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.