FvH4_4g36731

Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Electrons are transferred to the Fe-S cluster from NADPH via a FAD- and FMN-containing diflavin oxidoreductase. Has anti- apoptotic effects in the cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0008748
Physical Location & Seq
Forward (+)
33529583 .. 33531970
2388 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36731.t1

Sequence Viewer

Length: 783 bp
ATGGGATCGGTGCTGGCATTTACAGATGATGCGGTTCTATCTGCCAGTCTTGTTTTGGATGCGTTAAAGGAGCTTGGGAATGGAGTTTCGGATAAGTGTGAACCTCAAATTATCACTCAAGCGTCTTCCTTGAGTCAGCTGCCACAGGGGACTTCCTCTGTCGACATTGTGTTTGCCCTTTGCAGATCAATTGAATTCCCAAGTGATCAGTTGTTGAAGGAGGCCTCAAGAGTCTTGAAGCCTGGTGGAACAATTGTAGTTTGCAAGACTTCTGAAACAGATAAGACCACCTCTGTTCTTGAGCGCAAGTTACTGCTCTCTGGTTTTCTAGAAGCACAAGCTCTTCAAACAAAATCATCTCAGTTATGCTCTGGAGTCAAGGCTAAAAAGCCTTCTTGGAAAATTGGCTCATCCTTTGCCTTAAAAAAGCCTTCAAAAGCTCTACCAAAGTTGCAGATTGATGATGATTCGGATCTGATTGATGAGGATAGTTTACTAACAGAAGAGGACTTGAAGAAACCCCAGCCAGTTGTAGCTGATGATTGTGAAGTTGGAAGCACAAGGAAAGCTTGTAAAAACTGCACTTGTGGGAGGGCTGAAGCGGAGGAAAAAGTAGAGAAGTTACAATCTACTGTGGACTTAAGCAGTTTCCAGTCGGCATGTGGCAGCTGTGGATTAGGGGATGCTTTCCGATGCTCTACATGTCCTTATAAAGGTCTTCCTCCATTCAAACCAGGCGAGAAGGTAGTGTTTTCTTCAAACTTCCTTGCAGCAGACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0044085 GO:0044237 GO:0044424 GO:0044464 GO:0051186 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CIAPIN1 Methyltransf_11

Protein Analysis

261

Amino Acids

27.68

Weight (kDa)

5.16

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Anamorsin_N PF20922 38 - 119 3.5e-07 Anamorsin, N-terminal
CIAPIN1 PF05093 204 - 249 1.4e-15 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 711
AccI GTMKAC 1 cut(s) 162
AciI CCGC 2 cut(s) 32, 602
AclWI GGATC 2 cut(s) 13, 480
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 618
AfiI CCNNNNNNNGG 1 cut(s) 713
AflII CTTAAG 1 cut(s) 640
AflIII ACRYGT 1 cut(s) 701
AgsI TTSAA 8 cut(s) 194, 217, 238, 347, 435, 514, 730, 759
AjnI CCWGG 2 cut(s) 241, 733
AluBI AGCT 7 cut(s) 73, 139, 341, 440, 536, 569, 669
AluI AGCT 7 cut(s) 73, 139, 341, 440, 536, 569, 669
AlwI GGATC 2 cut(s) 13, 480
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 3 cut(s) 139, 666, 770
ApoI RAATTY 1 cut(s) 194
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspLEI GCGC 1 cut(s) 306
BbsI GAAGAC 2 cut(s) 117, 710
BbvI GCAGC 2 cut(s) 126, 678
BciT130I CCWGG 2 cut(s) 243, 735
BclI TGATCA 1 cut(s) 205
BfaI CTAG 1 cut(s) 329
BfrI CTTAAG 1 cut(s) 640
BisI GCNGC 3 cut(s) 140, 667, 771
BlsI GCNGC 3 cut(s) 141, 668, 772
Bme1390I CCNGG 2 cut(s) 243, 735
BmrFI CCNGG 2 cut(s) 243, 735
BmsI GCATC 4 cut(s) 19, 49, 673, 683
BpiI GAAGAC 2 cut(s) 117, 710
BpmI CTGGAG 1 cut(s) 393
BpuEI CTTGAG 4 cut(s) 102, 151, 211, 320
BsaBI GATNNNNATC 1 cut(s) 471
Bsc4I CCNNNNNNNGG 1 cut(s) 713
Bse1I ACTGG 3 cut(s) 45, 527, 652
Bse8I GATNNNNATC 1 cut(s) 471
BseBI CCWGG 2 cut(s) 243, 735
BseGI GGATG 3 cut(s) 64, 410, 688
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 713
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 3 cut(s) 45, 527, 652
BseXI GCAGC 2 cut(s) 126, 678
BseYI CCCAGC 1 cut(s) 522
BsgI GTGCAG 1 cut(s) 565
BshFI GGCC 1 cut(s) 224
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 713
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 1 cut(s) 224
Bsp143I GATC 4 cut(s) 5, 185, 205, 472
BspACI CCGC 2 cut(s) 32, 602
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 373
BspPI GGATC 2 cut(s) 13, 480
BspQI GCTCTTC 1 cut(s) 348
BspTI CTTAAG 1 cut(s) 640
BsrI ACTGG 3 cut(s) 45, 527, 652
BssMI GATC 4 cut(s) 5, 185, 205, 472
Bst2UI CCWGG 2 cut(s) 243, 735
Bst4CI ACNGT 1 cut(s) 634
Bst6I CTCTTC 2 cut(s) 348, 498
BstAFI CTTAAG 1 cut(s) 640
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 360
BstENI CCTNNNNNAGG 1 cut(s) 711
BstF5I GGATG 3 cut(s) 64, 410, 688
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 4 cut(s) 8, 188, 208, 475
BstMBI GATC 4 cut(s) 5, 185, 205, 472
BstNI CCWGG 2 cut(s) 243, 735
BstNSI RCATGY 2 cut(s) 663, 705
BstSCI CCNGG 2 cut(s) 241, 733
BstV1I GCAGC 2 cut(s) 126, 678
BstV2I GAAGAC 2 cut(s) 117, 710
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 3 cut(s) 64, 410, 688
Cac8I GCNNGC 1 cut(s) 15
CfoI GCGC 1 cut(s) 306
CseI GACGC 1 cut(s) 111
CviAII CATG 2 cut(s) 660, 702
DdeI CTNAG 1 cut(s) 360
DpnI GATC 4 cut(s) 7, 187, 207, 474
DpnII GATC 4 cut(s) 5, 185, 205, 472
Eam1104I CTCTTC 2 cut(s) 348, 498
EarI CTCTTC 2 cut(s) 348, 498
Eco147I AGGCCT 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 618
EcoNI CCTNNNNNAGG 1 cut(s) 711
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 241, 733
FaeI CATG 2 cut(s) 663, 705
FaiI YATR 6 cut(s) 367, 661, 703, 711, 779, 781
FalI AAGNNNNNCTT 2 cut(s) 553, 585
FaqI GGGAC 1 cut(s) 163
FatI CATG 2 cut(s) 659, 701
FbaI TGATCA 1 cut(s) 205
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 3 cut(s) 140, 667, 771
FokI GGATG 3 cut(s) 71, 397, 695
Fsp4HI GCNGC 3 cut(s) 140, 667, 771
FspBI CTAG 1 cut(s) 329
GlaI GCGC 1 cut(s) 305
GluI GCNGC 3 cut(s) 140, 667, 771
GsaI CCCAGC 1 cut(s) 526
GsuI CTGGAG 1 cut(s) 393
HaeIII GGCC 1 cut(s) 224
HgaI GACGC 1 cut(s) 111
HhaI GCGC 1 cut(s) 306
Hin1II CATG 2 cut(s) 663, 705
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 567
HinfI GANTC 4 cut(s) 133, 231, 375, 467
Hpy166II GTNNAC 4 cut(s) 101, 163, 494, 637
Hpy188I TCNGA 5 cut(s) 91, 274, 472, 477, 692
Hpy188III TCNNGA 5 cut(s) 228, 235, 299, 329, 372
Hpy8I GTNNAC 4 cut(s) 101, 163, 494, 637
HpyAV CCTTC 4 cut(s) 211, 402, 441, 736
HpyCH4III ACNGT 1 cut(s) 634
HpyCH4V TGCA 5 cut(s) 183, 264, 454, 582, 770
HpyF3I CTNAG 1 cut(s) 360
Hsp92II CATG 2 cut(s) 663, 705
HspAI GCGC 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 4 cut(s) 5, 185, 205, 472
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 1 cut(s) 70
Lsp1109I GCAGC 2 cut(s) 126, 678
LweI GCATC 4 cut(s) 19, 49, 673, 683
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 2 cut(s) 309, 621
MalI GATC 4 cut(s) 7, 187, 207, 474
MboI GATC 4 cut(s) 5, 185, 205, 472
MboII GAAGA 6 cut(s) 117, 335, 515, 526, 710, 747
MfeI CAATTG 2 cut(s) 189, 252
MflI RGATCY 1 cut(s) 472
MluCI AATT 5 cut(s) 108, 189, 194, 252, 402
MlyI GAGTC 3 cut(s) 142, 240, 384
MmeI TCCRAC 1 cut(s) 532
MseI TTAA 3 cut(s) 65, 422, 641
MspA1I CMGCKG 2 cut(s) 139, 669
MspCI CTTAAG 1 cut(s) 640
MspR9I CCNGG 2 cut(s) 243, 735
MunI CAATTG 2 cut(s) 189, 252
MvaI CCWGG 2 cut(s) 243, 735
NdeII GATC 4 cut(s) 5, 185, 205, 472
NlaIII CATG 2 cut(s) 663, 705
NspI RCATGY 2 cut(s) 663, 705
PceI AGGCCT 1 cut(s) 224
PciI ACATGT 1 cut(s) 701
PciSI GCTCTTC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 467
PkrI GCNGC 3 cut(s) 141, 668, 772
PleI GAGTC 3 cut(s) 141, 239, 383
PpsI GAGTC 3 cut(s) 141, 239, 383
PscI ACATGT 1 cut(s) 701
PsiI TTATAA 1 cut(s) 711
Psp6I CCWGG 2 cut(s) 241, 733
PspFI CCCAGC 1 cut(s) 522
PspGI CCWGG 2 cut(s) 241, 733
PsuI RGATCY 1 cut(s) 472
PvuII CAGCTG 2 cut(s) 139, 669
SalI GTCGAC 1 cut(s) 161
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 3 cut(s) 65, 422, 641
SatI GCNGC 3 cut(s) 140, 667, 771
Sau3AI GATC 4 cut(s) 5, 185, 205, 472
SchI GAGTC 3 cut(s) 142, 240, 384
ScrFI CCNGG 2 cut(s) 243, 735
SfaNI GCATC 4 cut(s) 19, 49, 673, 683
SmlI CTYRAG 5 cut(s) 117, 130, 226, 299, 640
SmoI CTYRAG 5 cut(s) 117, 130, 226, 299, 640
Sse9I AATT 5 cut(s) 108, 189, 194, 252, 402
SseBI AGGCCT 1 cut(s) 224
SsiI CCGC 2 cut(s) 32, 602
SspMI CTAG 1 cut(s) 329
StuI AGGCCT 1 cut(s) 224
StyD4I CCNGG 2 cut(s) 241, 733
TaaI ACNGT 1 cut(s) 634
TaqI TCGA 1 cut(s) 162
TasI AATT 5 cut(s) 108, 189, 194, 252, 402
TfiI GAWTC 1 cut(s) 467
Tru1I TTAA 3 cut(s) 65, 422, 641
Tru9I TTAA 3 cut(s) 65, 422, 641
TseI GCWGC 3 cut(s) 139, 666, 770
Vha464I CTTAAG 1 cut(s) 640
XagI CCTNNNNNAGG 1 cut(s) 711
XapI RAATTY 1 cut(s) 194
XbaI TCTAGA 1 cut(s) 328
XceI RCATGY 2 cut(s) 663, 705
XcmI CCANNNNNNNNNTGG 2 cut(s) 52, 659
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.