Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033369.1

Orthogroup ID

OG0008748

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1501

Gene Structure 1501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033369.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 700 bp

agcttcagataagtgtgaacctcaaattatcactcaagtgtcttccttgggtcagctgccacaggggacttcctctatcgacatagtgtttgccctttgcagatcaattgaattcctgagtgagcagttgttgaaggagacctcaagagtcttgaagcctggtggaacaatcctagtttacaagacttctgaaacagataagaccacctctgttcttgagcgcaagttacttttgtctggtttcctagaagcacaagctcttcaaacaaaatcatctgagttgtgctctggagtcaaggccaaaaagccttcttggaaaattggttcatcctttgccttaaaaaagccttcaaaaactctaccaaagttgcagatcgatgatgattcagatctgattgatgaggatagtctattaacggaagaggacttgaagaaaccccagccggtcgtagctgatgattgtgaagttggaagcacaaggaaagcttgtaaaaattgcacctgtgggagggctgaagcggagcaaaaagtagagaagtttcaatccactgtggatttgagcagtttccagtcagcatgtggcagttgtggactaggggatgctttccgatgcgctacatgtccttataaaggtcttcctccattcaaaccgggcgagaaggtagcgttctcttcaaacttccttgcagcagacatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0044085 GO:0044237 GO:0044424 GO:0044464 GO:0051186 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CIAPIN1 Methyltransf_11

Protein Analysis

232

Amino Acids

25.03

Weight (kDa)

5.77

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18400 AT5G18400 AT5G18400
fragaria_vesca	FvH4_4g36731
malus_domestica	MD13G1007600.v1.1 MD16G1000500.v1.1
prunus_persica	Prupe.1G345400_v2.0.a1 Prupe.1G345400_v2.0.a1 Prupe.8G036300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449691 RchiOBHm_Chr4g0446451
rosa_laevigata	RLG00000005660 RLG00000025805
rosa_multiflora	Rmu_sc0005526.1_g000008 Rmu_sc0009629.1_g000006 Rmu_sc0033369.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386890
rosa_samantha	Rh4AG433100 Rh4BG442300 Rh4CG459600 Rh4DG441000
rosa_wichuraiana	Rw3G001740 Rw4G037000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	628
AciI	CCGC	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	535
AfiI	CCNNNNNNNGG	2 cut(s)	508, 630
AflIII	ACRYGT	1 cut(s)	618
AgsI	TTSAA	9 cut(s)	111, 134, 155, 264, 352, 431, 543, 647, 676
AjnI	CCWGG	1 cut(s)	158
AleI	CACNNNNGTG	1 cut(s)	36
AloI	GAACNNNNNNTCC	2 cut(s)	308, 340
AluBI	AGCT	5 cut(s)	3, 56, 258, 453, 486
AluI	AGCT	5 cut(s)	3, 56, 258, 453, 486
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	132
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	2 cut(s)	56, 687
ApoI	RAATTY	1 cut(s)	111
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
AspLEI	GCGC	2 cut(s)	223, 615
AsuC2I	CCSGG	1 cut(s)	652
BbsI	GAAGAC	2 cut(s)	34, 627
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	160
BcnI	CCSGG	1 cut(s)	652
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	3 cut(s)	174, 246, 594
BglII	AGATCT	1 cut(s)	389
BisI	GCNGC	2 cut(s)	57, 688
BlsI	GCNGC	2 cut(s)	58, 689
Bme1390I	CCNGG	2 cut(s)	160, 652
BmrFI	CCNGG	2 cut(s)	160, 652
BmsI	GCATC	2 cut(s)	590, 600
BpiI	GAAGAC	2 cut(s)	34, 627
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
BpmI	CTGGAG	1 cut(s)	310
BpuEI	CTTGAG	3 cut(s)	19, 128, 237
BpuMI	CCSGG	1 cut(s)	652
Bsa29I	ATCGAT	1 cut(s)	376
BsaBI	GATNNNNATC	1 cut(s)	388
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	2 cut(s)	508, 630
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	569
Bse8I	GATNNNNATC	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	160
BseCI	ATCGAT	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	2 cut(s)	327, 605
BseJI	GATNNNNATC	1 cut(s)	388
BseLI	CCNNNNNNNGG	2 cut(s)	508, 630
BseMII	CTCAG	2 cut(s)	108, 268
BseNI	ACTGG	1 cut(s)	569
BseXI	GCAGC	1 cut(s)	43
BseYI	CCCAGC	1 cut(s)	439
Bsh1285I	CGRYCG	1 cut(s)	448
BshFI	GGCC	1 cut(s)	300
BshVI	ATCGAT	1 cut(s)	376
BsiEI	CGRYCG	1 cut(s)	448
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	444, 651
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	508, 630
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	300
Bso31I	GGTCTC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	3 cut(s)	102, 373, 389
BspACI	CCGC	1 cut(s)	519
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	2 cut(s)	109, 269
BspDI	ATCGAT	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	569
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	3 cut(s)	102, 373, 389
BssT1I	CCWWGG	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	551
Bst6I	CTCTTC	3 cut(s)	265, 415, 677
BstDEI	CTNAG	2 cut(s)	117, 277
BstENI	CCTNNNNNAGG	2 cut(s)	506, 628
BstF5I	GGATG	2 cut(s)	327, 605
BstHHI	GCGC	2 cut(s)	223, 615
BstKTI	GATC	3 cut(s)	105, 376, 392
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	3 cut(s)	102, 373, 389
BstMCI	CGRYCG	1 cut(s)	448
BstNI	CCWGG	1 cut(s)	160
BstNSI	RCATGY	2 cut(s)	580, 622
BstSCI	CCNGG	2 cut(s)	158, 650
BstV1I	GCAGC	1 cut(s)	43
BstV2I	GAAGAC	2 cut(s)	34, 627
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
Bsu15I	ATCGAT	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	300
BsuTUI	ATCGAT	1 cut(s)	376
BtsCI	GGATG	2 cut(s)	327, 605
BtsIMutI	CAGTG	1 cut(s)	547
CfoI	GCGC	2 cut(s)	223, 615
Cfr10I	RCCGGY	1 cut(s)	443
ClaI	ATCGAT	1 cut(s)	376
CviAII	CATG	2 cut(s)	577, 619
DdeI	CTNAG	2 cut(s)	117, 277
DpnI	GATC	3 cut(s)	104, 375, 391
DpnII	GATC	3 cut(s)	102, 373, 389
Eam1104I	CTCTTC	3 cut(s)	265, 415, 677
EarI	CTCTTC	3 cut(s)	265, 415, 677
Eco130I	CCWWGG	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	535
EcoNI	CCTNNNNNAGG	2 cut(s)	506, 628
EcoRI	GAATTC	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	2 cut(s)	580, 622
FaiI	YATR	6 cut(s)	84, 578, 620, 628, 696, 698
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	2 cut(s)	576, 618
Fnu4HI	GCNGC	2 cut(s)	57, 688
FokI	GGATG	2 cut(s)	314, 612
Fsp4HI	GCNGC	2 cut(s)	57, 688
FspBI	CTAG	3 cut(s)	174, 246, 594
GlaI	GCGC	2 cut(s)	222, 614
GluI	GCNGC	2 cut(s)	57, 688
GsaI	CCCAGC	1 cut(s)	443
GsuI	CTGGAG	1 cut(s)	310
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	2 cut(s)	444, 651
HhaI	GCGC	2 cut(s)	223, 615
Hin1II	CATG	2 cut(s)	580, 622
Hin6I	GCGC	2 cut(s)	221, 613
HinP1I	GCGC	2 cut(s)	221, 613
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	3 cut(s)	148, 292, 384
HpaII	CCGG	2 cut(s)	444, 651
Hpy166II	GTNNAC	3 cut(s)	18, 179, 591
Hpy188I	TCNGA	6 cut(s)	8, 191, 278, 389, 394, 609
Hpy188III	TCNNGA	5 cut(s)	116, 145, 152, 216, 289
Hpy8I	GTNNAC	3 cut(s)	18, 179, 591
HpyAV	CCTTC	4 cut(s)	128, 319, 358, 653
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4V	TGCA	4 cut(s)	100, 371, 499, 687
HpyF3I	CTNAG	2 cut(s)	117, 277
Hsp92II	CATG	2 cut(s)	580, 622
HspAI	GCGC	2 cut(s)	221, 613
Kzo9I	GATC	3 cut(s)	102, 373, 389
LguI	GCTCTTC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	521
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	2 cut(s)	590, 600
MaeI	CTAG	3 cut(s)	174, 246, 594
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	3 cut(s)	104, 375, 391
MboI	GATC	3 cut(s)	102, 373, 389
MboII	GAAGA	6 cut(s)	34, 252, 432, 443, 627, 664
MfeI	CAATTG	1 cut(s)	106
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	5 cut(s)	25, 106, 111, 319, 494
MlyI	GAGTC	2 cut(s)	157, 301
MmeI	TCCRAC	1 cut(s)	449
MnlI	CCTC	8 cut(s)	31, 83, 152, 218, 395, 416, 502, 649
MseI	TTAA	2 cut(s)	339, 414
MslI	CAYNNNNRTG	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	2 cut(s)	444, 651
MspR9I	CCNGG	2 cut(s)	160, 652
MunI	CAATTG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	160
NciI	CCSGG	1 cut(s)	652
NdeII	GATC	3 cut(s)	102, 373, 389
NlaIII	CATG	2 cut(s)	580, 622
NspI	RCATGY	2 cut(s)	580, 622
OliI	CACNNNNGTG	1 cut(s)	36
PciI	ACATGT	1 cut(s)	618
PciSI	GCTCTTC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	384
PkrI	GCNGC	2 cut(s)	58, 689
PleI	GAGTC	2 cut(s)	156, 300
PpsI	GAGTC	2 cut(s)	156, 300
PscI	ACATGT	1 cut(s)	618
PsiI	TTATAA	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	36
SapI	GCTCTTC	1 cut(s)	265
SaqAI	TTAA	2 cut(s)	339, 414
SatI	GCNGC	2 cut(s)	57, 688
Sau3AI	GATC	3 cut(s)	102, 373, 389
SchI	GAGTC	2 cut(s)	157, 301
ScrFI	CCNGG	2 cut(s)	160, 652
SduI	GDGCHC	1 cut(s)	288
SfaNI	GCATC	2 cut(s)	590, 600
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	3 cut(s)	34, 143, 216
SmoI	CTYRAG	3 cut(s)	34, 143, 216
Sse9I	AATT	5 cut(s)	25, 106, 111, 319, 494
SsiI	CCGC	1 cut(s)	519
SspMI	CTAG	3 cut(s)	174, 246, 594
StyD4I	CCNGG	2 cut(s)	158, 650
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	551
TaqI	TCGA	2 cut(s)	79, 376
TasI	AATT	5 cut(s)	25, 106, 111, 319, 494
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	2 cut(s)	339, 414
Tru9I	TTAA	2 cut(s)	339, 414
TscAI	CASTG	1 cut(s)	554
TseI	GCWGC	2 cut(s)	56, 687
TspDTI	ATGAA	1 cut(s)	316
TspGWI	ACGGA	1 cut(s)	432
TspRI	CASTG	1 cut(s)	554
XagI	CCTNNNNNAGG	2 cut(s)	506, 628
XapI	RAATTY	1 cut(s)	111
XceI	RCATGY	2 cut(s)	580, 622
XcmI	CCANNNNNNNNNTGG	1 cut(s)	576
XspI	CTAG	3 cut(s)	174, 246, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.