Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009629.1

Orthogroup ID

OG0008748

Physical Location & Seq

Genomic Coordinates Forward (+)

27524 .. 29532

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009629.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgggatcggtgctggcatttacggatgatgtggttctacccaccagtcagctgccacaggggacttcctctatcgacattgtggttgccctttgcagatcaattgaattcctgagtgagcagttgttgaaggagacctcaagagtcttgaagcctggtggaaccatcctagtttacaagacttatgaaacagataagaccacctctgttcttgagtgcaagttacttttgtctggtttcctagaagcacaagctcttcaaacaaaatcatctgagttgtgctctggagtcaaggccaaaaagccttcttggaaaattggctcatcctttgccttaaaaaagccttcaaaaactctaccgaagttgcagatcgatgatcattcagatctgattgatgaggatagtctattaacggaagaggacttgaagaaaccccagctggtcgtagctgatgattgtgaagttggaagcacaaggaaagcttgtaaaaattgcacttgtgggagggctgaagcggagcaaaaagtagagaagttacaatccactgtggatttgagcagtttccagtcagcatgtggaagttgtggactaggggatgctttccgatgcgctacatgtccttataagggtcttcctccattcaaaccgggcgagaaggtagcgttctcttcaaacttccttgcagcagacgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0044085 GO:0044237 GO:0044424 GO:0044464 GO:0051186 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CIAPIN1 Methyltransf_11

Protein Analysis

231

Amino Acids

24.87

Weight (kDa)

5.62

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18400 AT5G18400 AT5G18400
fragaria_vesca	FvH4_4g36731
malus_domestica	MD13G1007600.v1.1 MD16G1000500.v1.1
prunus_persica	Prupe.1G345400_v2.0.a1 Prupe.1G345400_v2.0.a1 Prupe.8G036300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449691 RchiOBHm_Chr4g0446451
rosa_laevigata	RLG00000005660 RLG00000025805
rosa_multiflora	Rmu_sc0005526.1_g000008 Rmu_sc0009629.1_g000006 Rmu_sc0033369.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386890
rosa_samantha	Rh4AG433100 Rh4BG442300 Rh4CG459600 Rh4DG441000
rosa_wichuraiana	Rw3G001740 Rw4G037000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	624
AciI	CCGC	1 cut(s)	515
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	531
AfiI	CCNNNNNNNGG	1 cut(s)	626
AflIII	ACRYGT	1 cut(s)	614
AgsI	TTSAA	8 cut(s)	107, 130, 151, 260, 348, 427, 643, 672
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	5 cut(s)	52, 254, 439, 449, 482
AluI	AGCT	5 cut(s)	52, 254, 439, 449, 482
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	52, 683
ApoI	RAATTY	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	611
AsuC2I	CCSGG	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	623
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	156
BclI	TGATCA	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	648
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	3 cut(s)	170, 242, 590
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	2 cut(s)	53, 684
BlsI	GCNGC	2 cut(s)	54, 685
Bme1390I	CCNGG	2 cut(s)	156, 648
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	2 cut(s)	156, 648
BmsI	GCATC	2 cut(s)	586, 596
BpiI	GAAGAC	1 cut(s)	623
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BpmI	CTGGAG	1 cut(s)	306
BpuEI	CTTGAG	2 cut(s)	124, 233
BpuMI	CCSGG	1 cut(s)	648
Bsa29I	ATCGAT	1 cut(s)	372
BsaI	GGTCTC	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
Bse1I	ACTGG	2 cut(s)	45, 565
BseBI	CCWGG	1 cut(s)	156
BseCI	ATCGAT	1 cut(s)	372
BseGI	GGATG	4 cut(s)	31, 165, 323, 601
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseMII	CTCAG	2 cut(s)	104, 264
BseNI	ACTGG	2 cut(s)	45, 565
BseXI	GCAGC	1 cut(s)	39
BseYI	CCCAGC	1 cut(s)	435
BshFI	GGCC	1 cut(s)	296
BshVI	ATCGAT	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	647
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	626
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	5 cut(s)	5, 98, 369, 376, 385
BspACI	CCGC	1 cut(s)	515
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	2 cut(s)	105, 265
BspDI	ATCGAT	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	1 cut(s)	13
BspQI	GCTCTTC	1 cut(s)	261
BspTNI	GGTCTC	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	45, 565
BssMI	GATC	5 cut(s)	5, 98, 369, 376, 385
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	547
Bst6I	CTCTTC	3 cut(s)	261, 411, 673
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	113, 273
BstF5I	GGATG	4 cut(s)	31, 165, 323, 601
BstHHI	GCGC	1 cut(s)	611
BstKTI	GATC	5 cut(s)	8, 101, 372, 379, 388
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	5 cut(s)	5, 98, 369, 376, 385
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	2 cut(s)	576, 618
BstSCI	CCNGG	2 cut(s)	154, 646
BstV1I	GCAGC	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	623
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
Bsu15I	ATCGAT	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	296
BsuTUI	ATCGAT	1 cut(s)	372
BtsCI	GGATG	4 cut(s)	31, 165, 323, 601
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	1 cut(s)	15
CfoI	GCGC	1 cut(s)	611
ClaI	ATCGAT	1 cut(s)	372
CviAII	CATG	2 cut(s)	573, 615
DdeI	CTNAG	2 cut(s)	113, 273
DpnI	GATC	5 cut(s)	7, 100, 371, 378, 387
DpnII	GATC	5 cut(s)	5, 98, 369, 376, 385
Eam1104I	CTCTTC	3 cut(s)	261, 411, 673
EarI	CTCTTC	3 cut(s)	261, 411, 673
Eco31I	GGTCTC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	531
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	154
FaeI	CATG	2 cut(s)	576, 618
FaiI	YATR	5 cut(s)	186, 574, 616, 624, 694
FalI	AAGNNNNNCTT	2 cut(s)	466, 498
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	2 cut(s)	572, 614
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	2 cut(s)	53, 684
FokI	GGATG	4 cut(s)	38, 152, 310, 608
Fsp4HI	GCNGC	2 cut(s)	53, 684
FspBI	CTAG	3 cut(s)	170, 242, 590
GlaI	GCGC	1 cut(s)	610
GluI	GCNGC	2 cut(s)	53, 684
GsaI	CCCAGC	1 cut(s)	439
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	1 cut(s)	647
HhaI	GCGC	1 cut(s)	611
Hin1II	CATG	2 cut(s)	576, 618
Hin6I	GCGC	1 cut(s)	609
HinP1I	GCGC	1 cut(s)	609
HindIII	AAGCTT	1 cut(s)	480
HinfI	GANTC	2 cut(s)	144, 288
HpaII	CCGG	1 cut(s)	647
Hpy166II	GTNNAC	2 cut(s)	175, 587
Hpy188I	TCNGA	4 cut(s)	274, 385, 390, 605
Hpy188III	TCNNGA	5 cut(s)	112, 141, 148, 212, 285
Hpy8I	GTNNAC	2 cut(s)	175, 587
HpyAV	CCTTC	4 cut(s)	124, 315, 354, 649
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4IV	ACGT	1 cut(s)	690
HpyCH4V	TGCA	5 cut(s)	96, 219, 367, 495, 683
HpyF3I	CTNAG	2 cut(s)	113, 273
HpySE526I	ACGT	1 cut(s)	690
Hsp92II	CATG	2 cut(s)	576, 618
HspAI	GCGC	1 cut(s)	609
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	5 cut(s)	5, 98, 369, 376, 385
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	1 cut(s)	39
LweI	GCATC	2 cut(s)	586, 596
MaeI	CTAG	3 cut(s)	170, 242, 590
MaeII	ACGT	1 cut(s)	690
MaeIII	GTNAC	2 cut(s)	222, 534
MalI	GATC	5 cut(s)	7, 100, 371, 378, 387
MboI	GATC	5 cut(s)	5, 98, 369, 376, 385
MboII	GAAGA	5 cut(s)	248, 428, 439, 623, 660
MfeI	CAATTG	1 cut(s)	102
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	4 cut(s)	102, 107, 315, 490
MlyI	GAGTC	2 cut(s)	153, 297
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	7 cut(s)	79, 148, 214, 391, 412, 498, 645
MseI	TTAA	2 cut(s)	335, 410
MspA1I	CMGCKG	2 cut(s)	52, 439
MspI	CCGG	1 cut(s)	647
MspR9I	CCNGG	2 cut(s)	156, 648
MunI	CAATTG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	156
NciI	CCSGG	1 cut(s)	648
NdeII	GATC	5 cut(s)	5, 98, 369, 376, 385
NlaIII	CATG	2 cut(s)	576, 618
NlaIV	GGNNCC	1 cut(s)	163
NspI	RCATGY	2 cut(s)	576, 618
PciI	ACATGT	1 cut(s)	614
PciSI	GCTCTTC	1 cut(s)	261
PkrI	GCNGC	2 cut(s)	54, 685
PleI	GAGTC	2 cut(s)	152, 296
PpsI	GAGTC	2 cut(s)	152, 296
PscI	ACATGT	1 cut(s)	614
PsiI	TTATAA	1 cut(s)	624
Psp6I	CCWGG	1 cut(s)	154
PspFI	CCCAGC	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	385
PvuII	CAGCTG	2 cut(s)	52, 439
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	335, 410
SatI	GCNGC	2 cut(s)	53, 684
Sau3AI	GATC	5 cut(s)	5, 98, 369, 376, 385
SchI	GAGTC	2 cut(s)	153, 297
ScrFI	CCNGG	2 cut(s)	156, 648
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	9 cut(s)	54, 140, 206, 256, 441, 451, 484, 660, 693
SfaNI	GCATC	2 cut(s)	586, 596
SmlI	CTYRAG	2 cut(s)	139, 212
SmoI	CTYRAG	2 cut(s)	139, 212
Sse9I	AATT	4 cut(s)	102, 107, 315, 490
SsiI	CCGC	1 cut(s)	515
SspMI	CTAG	3 cut(s)	170, 242, 590
StyD4I	CCNGG	2 cut(s)	154, 646
TaaI	ACNGT	1 cut(s)	547
TaiI	ACGT	1 cut(s)	693
TaqI	TCGA	2 cut(s)	75, 372
TasI	AATT	4 cut(s)	102, 107, 315, 490
Tru1I	TTAA	2 cut(s)	335, 410
Tru9I	TTAA	2 cut(s)	335, 410
TscAI	CASTG	1 cut(s)	550
TseI	GCWGC	2 cut(s)	52, 683
TspDTI	ATGAA	1 cut(s)	201
TspGWI	ACGGA	2 cut(s)	38, 428
TspRI	CASTG	1 cut(s)	550
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	2 cut(s)	576, 618
XcmI	CCANNNNNNNNNTGG	1 cut(s)	572
XspI	CTAG	3 cut(s)	170, 242, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.