Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008748

Physical Location & Seq

Genomic Coordinates Reverse (-)

473231 .. 476026

Gene Structure 2796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1007600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGGATCTGTGCTGGCATTTACGGATGATGGAGTTCTACCGGTTGGTCTAGTTTTTGATGCATCAAGGGAGCTCGGGACCGAAAAGTGTGAACCTCAAATTGTCACTCTGTCTTCTTCAAATGAGCTGCCGGTGGGGCCTTCCACTGTCAATATTGTGTTTACTCTTTGTAGATCGATTGAATTTCCAAATGAGCAGTTGCTAGGGGAAATCTCAAGAGTCTTGAAGCCTGGTGGGACAGTTCTAATTTACAAGATATCTGATGCTTCTAAAGGGGAAACAGATAAGACCACCTCCGTTATTGAGCGCAAGTTACTATTGTCTGGTTTTCTAGAAGCAAAAGCTTTTCAAGTTAAATCAAGTTTACCATCTGAGTTATCTTTTGGGGTCAAGGCTAAAAAGCCTTCTTGGAAGATTGGTTCATCTTTTGCCTTAAAAAAGACCACAAAAACTTTACCAAAAATTCAGATCAATGATGATTCAGATCTCATTGATGAAGATAGTTTACTAACAGAAGAGGACTTAAAGAAACCCCAGCTGCTATCAAGTGATTGCGAAGTTGGAAGCACAAGGAAAGCTTGTAAAAACTGCACATGTGGGAGAGCCGAAGAAGAGCAGAAAGTAGAGAAGTTAGGCTCCACTGTAGATTTGAGCAATTTCAAGTCGCAATGTGGCAGTTGTGGACTAGGGGATGCTTTTCGATGCGCTACATGTCCTTTTAAAGGTCTTCCTCCATTCAAACCCGGCGAGAAGGTATCATTGTCCGCGAACTTCCTTACAGCAGACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0044085 GO:0044237 GO:0044424 GO:0044464 GO:0051186 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CIAPIN1 Methyltransf_11

Protein Analysis

264

Amino Acids

28.28

Weight (kDa)

5.53

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Anamorsin_N	PF20922	58 - 127	3e-07	Anamorsin, N-terminal
CIAPIN1	PF05093	217 - 254	5.3e-15	Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18400 AT5G18400 AT5G18400
fragaria_vesca	FvH4_4g36731
malus_domestica	MD13G1007600.v1.1 MD16G1000500.v1.1
prunus_persica	Prupe.1G345400_v2.0.a1 Prupe.1G345400_v2.0.a1 Prupe.8G036300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449691 RchiOBHm_Chr4g0446451
rosa_laevigata	RLG00000005660 RLG00000025805
rosa_multiflora	Rmu_sc0005526.1_g000008 Rmu_sc0009629.1_g000006 Rmu_sc0033369.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386890
rosa_samantha	Rh4AG433100 Rh4BG442300 Rh4CG459600 Rh4DG441000
rosa_wichuraiana	Rw3G001740 Rw4G037000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	767
AciI	CCGC	1 cut(s)	765
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	182, 462
AfiI	CCNNNNNNNGG	1 cut(s)	722
AflIII	ACRYGT	2 cut(s)	593, 710
AgeI	ACCGGT	1 cut(s)	40
AgsI	TTSAA	6 cut(s)	120, 182, 226, 350, 661, 739
AjnI	CCWGG	1 cut(s)	229
AloI	GAACNNNNNNTCC	2 cut(s)	403, 435
AluBI	AGCT	5 cut(s)	73, 127, 344, 538, 578
AluI	AGCT	5 cut(s)	73, 127, 344, 538, 578
Alw21I	GWGCWC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	2 cut(s)	127, 538
ApoI	RAATTY	2 cut(s)	182, 462
AsiGI	ACCGGT	1 cut(s)	40
AspLEI	GCGC	2 cut(s)	309, 707
AspS9I	GGNCC	2 cut(s)	78, 137
AsuC2I	CCSGG	1 cut(s)	744
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	75
BarI	GAAGNNNNNNTAC	2 cut(s)	489, 521
BbsI	GAAGAC	2 cut(s)	105, 719
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	114, 525
BccI	CCATC	2 cut(s)	23, 376
BciT130I	CCWGG	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	744
BfaI	CTAG	5 cut(s)	50, 203, 332, 686, 790
BfmI	CTRYAG	1 cut(s)	642
BglI	GCCNNNNNGGC	1 cut(s)	136
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	2 cut(s)	128, 539
BlsI	GCNGC	2 cut(s)	129, 540
Bme1390I	CCNGG	2 cut(s)	231, 744
Bme18I	GGWCC	1 cut(s)	78
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	78, 137
BmiI	GGNNCC	3 cut(s)	79, 138, 637
BmrFI	CCNGG	2 cut(s)	231, 744
BmsI	GCATC	5 cut(s)	49, 71, 253, 682, 692
BpiI	GAAGAC	2 cut(s)	105, 719
BpuEI	CTTGAG	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	744
Bsa29I	ATCGAT	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	483
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	722
Bse118I	RCCGGY	2 cut(s)	40, 130
Bse3DI	GCAATG	1 cut(s)	674
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	176
BseGI	GGATG	2 cut(s)	31, 697
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	1 cut(s)	722
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	114, 525
BseYI	CCCAGC	1 cut(s)	534
BsgI	GTGCAG	1 cut(s)	574
Bsh1236I	CGCG	1 cut(s)	767
BshFI	GGCC	1 cut(s)	139
BshTI	ACCGGT	1 cut(s)	40
BshVI	ATCGAT	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	3 cut(s)	41, 131, 744
BslFI	GGGAC	2 cut(s)	91, 250
BslI	CCNNNNNNNGG	1 cut(s)	722
BsmFI	GGGAC	2 cut(s)	91, 250
BsnI	GGCC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	4 cut(s)	5, 173, 468, 484
BspACI	CCGC	1 cut(s)	765
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	364
BspDI	ATCGAT	1 cut(s)	176
BspFNI	CGCG	1 cut(s)	767
BspLI	GGNNCC	3 cut(s)	79, 138, 637
BspPI	GGATC	1 cut(s)	13
BspQI	GCTCTTC	1 cut(s)	606
BsrDI	GCAATG	1 cut(s)	674
BsrFI	RCCGGY	2 cut(s)	40, 130
BssAI	RCCGGY	2 cut(s)	40, 130
BssMI	GATC	4 cut(s)	5, 173, 468, 484
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	3 cut(s)	148, 241, 643
Bst6I	CTCTTC	2 cut(s)	510, 606
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	372
BstENI	CCTNNNNNAGG	1 cut(s)	720
BstF5I	GGATG	2 cut(s)	31, 697
BstFNI	CGCG	1 cut(s)	767
BstHHI	GCGC	2 cut(s)	309, 707
BstKTI	GATC	4 cut(s)	8, 176, 471, 487
BstMBI	GATC	4 cut(s)	5, 173, 468, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	2 cut(s)	597, 714
BstSCI	CCNGG	2 cut(s)	229, 742
BstSFI	CTRYAG	1 cut(s)	642
BstUI	CGCG	1 cut(s)	767
BstV1I	GCAGC	2 cut(s)	114, 525
BstV2I	GAAGAC	2 cut(s)	105, 719
BstX2I	RGATCY	2 cut(s)	5, 484
BstYI	RGATCY	2 cut(s)	5, 484
Bsu15I	ATCGAT	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	139
BsuTUI	ATCGAT	1 cut(s)	176
BtsCI	GGATG	2 cut(s)	31, 697
BtsIMutI	CAGTG	2 cut(s)	144, 639
Cac8I	GCNNGC	1 cut(s)	15
CfoI	GCGC	2 cut(s)	309, 707
Cfr10I	RCCGGY	2 cut(s)	40, 130
Cfr13I	GGNCC	2 cut(s)	78, 137
ClaI	ATCGAT	1 cut(s)	176
CspAI	ACCGGT	1 cut(s)	40
CviAII	CATG	2 cut(s)	594, 711
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	4 cut(s)	7, 175, 470, 486
DpnII	GATC	4 cut(s)	5, 173, 468, 484
DraI	TTTAAA	1 cut(s)	721
Eam1104I	CTCTTC	2 cut(s)	510, 606
EarI	CTCTTC	2 cut(s)	510, 606
Ecl136II	GAGCTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	75
Eco32I	GATATC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	720
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	2 cut(s)	597, 714
FaiI	YATR	2 cut(s)	595, 712
FalI	AAGNNNNNCTT	2 cut(s)	562, 594
FaqI	GGGAC	2 cut(s)	91, 250
FatI	CATG	2 cut(s)	593, 710
Fnu4HI	GCNGC	2 cut(s)	128, 539
FokI	GGATG	2 cut(s)	38, 704
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	2 cut(s)	128, 539
FspBI	CTAG	5 cut(s)	50, 203, 332, 686, 790
GlaI	GCGC	2 cut(s)	308, 706
GluI	GCNGC	2 cut(s)	128, 539
GsaI	CCCAGC	1 cut(s)	538
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	3 cut(s)	41, 131, 744
HhaI	GCGC	2 cut(s)	309, 707
Hin1II	CATG	2 cut(s)	597, 714
Hin6I	GCGC	2 cut(s)	307, 705
HinP1I	GCGC	2 cut(s)	307, 705
HindIII	AAGCTT	2 cut(s)	342, 576
HinfI	GANTC	2 cut(s)	219, 479
HpaII	CCGG	3 cut(s)	41, 131, 744
Hpy166II	GTNNAC	5 cut(s)	92, 162, 365, 506, 683
Hpy188I	TCNGA	4 cut(s)	262, 373, 468, 484
Hpy188III	TCNNGA	4 cut(s)	76, 216, 223, 332
Hpy8I	GTNNAC	5 cut(s)	92, 162, 365, 506, 683
HpyAV	CCTTC	3 cut(s)	150, 414, 745
HpyCH4III	ACNGT	3 cut(s)	148, 241, 643
HpyCH4V	TGCA	2 cut(s)	62, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	597, 714
HspAI	GCGC	2 cut(s)	307, 705
Kzo9I	GATC	4 cut(s)	5, 173, 468, 484
LguI	GCTCTTC	1 cut(s)	606
LmnI	GCTCC	2 cut(s)	70, 641
LpnPI	CCDG	7 cut(s)	54, 144, 216, 243, 309, 548, 757
Lsp1109I	GCAGC	2 cut(s)	114, 525
LweI	GCATC	5 cut(s)	49, 71, 253, 682, 692
MaeI	CTAG	5 cut(s)	50, 203, 332, 686, 790
MaeIII	GTNAC	2 cut(s)	103, 312
MalI	GATC	4 cut(s)	7, 175, 470, 486
MboI	GATC	4 cut(s)	5, 173, 468, 484
MboII	GAAGA	8 cut(s)	105, 108, 424, 509, 527, 620, 623, 719
MflI	RGATCY	2 cut(s)	5, 484
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	5 cut(s)	99, 182, 246, 462, 655
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	4 cut(s)	105, 304, 511, 741
Mph1103I	ATGCAT	1 cut(s)	64
MseI	TTAA	4 cut(s)	354, 434, 524, 720
MspA1I	CMGCKG	1 cut(s)	538
MspI	CCGG	3 cut(s)	41, 131, 744
MspR9I	CCNGG	2 cut(s)	231, 744
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	767
MwoI	GCNNNNNNNGC	1 cut(s)	136
NciI	CCSGG	1 cut(s)	744
NdeII	GATC	4 cut(s)	5, 173, 468, 484
NlaIII	CATG	2 cut(s)	597, 714
NlaIV	GGNNCC	3 cut(s)	79, 138, 637
NmuCI	GTSAC	1 cut(s)	103
NsiI	ATGCAT	1 cut(s)	64
NspI	RCATGY	2 cut(s)	597, 714
PciI	ACATGT	2 cut(s)	593, 710
PciSI	GCTCTTC	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	479
PinAI	ACCGGT	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	129, 540
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PscI	ACATGT	2 cut(s)	593, 710
Psp124BI	GAGCTC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	79, 138, 637
PspPI	GGNCC	2 cut(s)	78, 137
PsuI	RGATCY	2 cut(s)	5, 484
PvuII	CAGCTG	1 cut(s)	538
SacI	GAGCTC	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	606
SaqAI	TTAA	4 cut(s)	354, 434, 524, 720
SatI	GCNGC	2 cut(s)	128, 539
Sau3AI	GATC	4 cut(s)	5, 173, 468, 484
Sau96I	GGNCC	2 cut(s)	78, 137
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	2 cut(s)	231, 744
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	9 cut(s)	75, 97, 129, 296, 346, 540, 580, 727, 756
SfaNI	GCATC	5 cut(s)	49, 71, 253, 682, 692
SfcI	CTRYAG	1 cut(s)	642
SinI	GGWCC	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	5 cut(s)	99, 182, 246, 462, 655
SsiI	CCGC	1 cut(s)	765
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	5 cut(s)	50, 203, 332, 686, 790
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	229, 742
TaaI	ACNGT	3 cut(s)	148, 241, 643
TaqI	TCGA	2 cut(s)	176, 700
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	5 cut(s)	99, 182, 246, 462, 655
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	4 cut(s)	354, 434, 524, 720
Tru9I	TTAA	4 cut(s)	354, 434, 524, 720
TscAI	CASTG	2 cut(s)	151, 646
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	2 cut(s)	127, 538
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	2 cut(s)	411, 510
TspGWI	ACGGA	2 cut(s)	38, 286
TspRI	CASTG	2 cut(s)	151, 646
VpaK11BI	GGWCC	1 cut(s)	78
XagI	CCTNNNNNAGG	1 cut(s)	720
XapI	RAATTY	2 cut(s)	182, 462
XbaI	TCTAGA	1 cut(s)	331
XceI	RCATGY	2 cut(s)	597, 714
XspI	CTAG	5 cut(s)	50, 203, 332, 686, 790
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.