Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008748

Physical Location & Seq

Genomic Coordinates Forward (+)

3311786 .. 3314156

Gene Structure 2371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G036300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGGAGATTGGGAGTGGAGCTACCGAAAAGTGCGAACCTCAATTATCACTGAAGTGTCTTCTTTAAGTCAGCTTCCCCTGGGGCCTTCCTCAGTGAACGTTGTTTTTACTCTTTGTAGATCGATTGAATTTCTTAATGAGCAATTGTTAGGGGAAATCTCAAGAGTCTTGGAGCCTGGTGGAACAGTCCTAATTTACAAGACTTCTGATTCTTCCAAAGGGGAAAGTGATAAGGCTGCCTCTGTTATTGGGCGTAAGTTACTGTTGTCTGGTTTTCTAGAAGCACAAGCTCTTCAAATTAAATCAAATTTACCATCTGAGTTGCATGCCATTCGCAATCCCTTTTATCCACCTCATCAATCTTCCTTTATTTTAAATTGGCTCCAACTTGTCAAGGCAAAAAAGCCTTCCTGGAAGATTGGTTCCTCCTTCGCCTTAAAAAAGACCACCAAAAGTTTACCAAAAGTTCAGATCAATGATGATTCAGATCTGATTGATGAGGATAGTCTGTTAACAGAAGAGGACTTAAAGAAACCGCAGCCGCTTCCACCTGGTGATTGTGAAGTTGGAAGCACAAGGAAAGCTTGTAAAAATTGCACTTGCGGACCAGGTGATGCTTTTAGATGCTCTACATGTCCTTTTAAAGGTCTTCCTCCATTCAAACCAGGCGAGAAGGTATCATTGTCAGCGAACTTCCTTGCAGCAGACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0044085 GO:0044237 GO:0044424 GO:0044464 GO:0051186 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CIAPIN1 Methyltransf_11

Protein Analysis

238

Amino Acids

25.96

Weight (kDa)

8.41

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18400 AT5G18400 AT5G18400
fragaria_vesca	FvH4_4g36731
malus_domestica	MD13G1007600.v1.1 MD16G1000500.v1.1
prunus_persica	Prupe.1G345400_v2.0.a1 Prupe.1G345400_v2.0.a1 Prupe.8G036300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449691 RchiOBHm_Chr4g0446451
rosa_laevigata	RLG00000005660 RLG00000025805
rosa_multiflora	Rmu_sc0005526.1_g000008 Rmu_sc0009629.1_g000006 Rmu_sc0033369.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386890
rosa_samantha	Rh4AG433100 Rh4BG442300 Rh4CG459600 Rh4DG441000
rosa_wichuraiana	Rw3G001740 Rw4G037000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	536, 542, 603
AclI	AACGTT	1 cut(s)	99
AcsI	RAATTY	2 cut(s)	128, 307
AcuI	CTGAAG	1 cut(s)	72
AdeI	CACNNNGTG	1 cut(s)	554
AfiI	CCNNNNNNNGG	1 cut(s)	644
AflIII	ACRYGT	1 cut(s)	632
AgsI	TTSAA	3 cut(s)	128, 296, 661
AjnI	CCWGG	6 cut(s)	78, 175, 410, 550, 607, 664
AleI	CACNNNNGTG	1 cut(s)	53
AloI	GAACNNNNNNTCC	2 cut(s)	406, 438
AluBI	AGCT	4 cut(s)	21, 73, 290, 584
AluI	AGCT	4 cut(s)	21, 73, 290, 584
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	3 cut(s)	236, 538, 701
ApoI	RAATTY	2 cut(s)	128, 307
AspS9I	GGNCC	2 cut(s)	83, 605
AsuHPI	GGTGA	2 cut(s)	566, 623
AvaII	GGWCC	1 cut(s)	605
BbsI	GAAGAC	2 cut(s)	51, 641
BbvI	GCAGC	2 cut(s)	223, 550
BccI	CCATC	1 cut(s)	322
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	6 cut(s)	80, 177, 412, 552, 609, 666
BfaI	CTAG	1 cut(s)	278
BglII	AGATCT	1 cut(s)	487
BisI	GCNGC	4 cut(s)	237, 539, 542, 702
BlsI	GCNGC	4 cut(s)	238, 540, 543, 703
Bme1390I	CCNGG	6 cut(s)	80, 177, 412, 552, 609, 666
Bme18I	GGWCC	1 cut(s)	605
BmgT120I	GGNCC	2 cut(s)	83, 605
BmiI	GGNNCC	4 cut(s)	84, 174, 383, 424
BmrFI	CCNGG	6 cut(s)	80, 177, 412, 552, 609, 666
BmsI	GCATC	2 cut(s)	604, 614
BpiI	GAAGAC	2 cut(s)	51, 641
BpuEI	CTTGAG	1 cut(s)	145
Bsa29I	ATCGAT	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	78, 79
Bsc4I	CCNNNNNNNGG	1 cut(s)	644
Bse8I	GATNNNNATC	1 cut(s)	486
BseBI	CCWGG	6 cut(s)	80, 177, 412, 552, 609, 666
BseCI	ATCGAT	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	78, 79
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	644
BseMII	CTCAG	2 cut(s)	105, 309
BseXI	GCAGC	2 cut(s)	223, 550
BshFI	GGCC	1 cut(s)	85
BshVI	ATCGAT	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	644
BsnI	GGCC	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	119, 471, 487
BspACI	CCGC	3 cut(s)	536, 542, 603
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	2 cut(s)	104, 310
BspDI	ATCGAT	1 cut(s)	122
BspLI	GGNNCC	4 cut(s)	84, 174, 383, 424
BspQI	GCTCTTC	1 cut(s)	297
BssECI	CCNNGG	2 cut(s)	78, 79
BssMI	GATC	3 cut(s)	119, 471, 487
Bst2UI	CCWGG	6 cut(s)	80, 177, 412, 552, 609, 666
Bst4CI	ACNGT	2 cut(s)	187, 264
Bst6I	CTCTTC	2 cut(s)	297, 513
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	2 cut(s)	91, 318
BstENI	CCTNNNNNAGG	1 cut(s)	642
BstKTI	GATC	3 cut(s)	122, 474, 490
BstMBI	GATC	3 cut(s)	119, 471, 487
BstNI	CCWGG	6 cut(s)	80, 177, 412, 552, 609, 666
BstNSI	RCATGY	2 cut(s)	329, 636
BstSCI	CCNGG	6 cut(s)	78, 175, 410, 550, 607, 664
BstV1I	GCAGC	2 cut(s)	223, 550
BstV2I	GAAGAC	2 cut(s)	51, 641
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
Bsu15I	ATCGAT	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	85
BsuTUI	ATCGAT	1 cut(s)	122
BtsIMutI	CAGTG	2 cut(s)	48, 99
Cac8I	GCNNGC	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	83, 605
ClaI	ATCGAT	1 cut(s)	122
CsiI	ACCWGGT	2 cut(s)	550, 607
CviAII	CATG	2 cut(s)	326, 633
DdeI	CTNAG	2 cut(s)	91, 318
DpnI	GATC	3 cut(s)	121, 473, 489
DpnII	GATC	3 cut(s)	119, 471, 487
DraI	TTTAAA	2 cut(s)	375, 643
DraIII	CACNNNGTG	1 cut(s)	554
Eam1104I	CTCTTC	2 cut(s)	297, 513
EarI	CTCTTC	2 cut(s)	297, 513
Eco47I	GGWCC	1 cut(s)	605
Eco57I	CTGAAG	1 cut(s)	72
EcoNI	CCTNNNNNAGG	1 cut(s)	642
EcoO109I	RGGNCCY	1 cut(s)	83
EcoRII	CCWGG	6 cut(s)	78, 175, 410, 550, 607, 664
FaeI	CATG	2 cut(s)	329, 636
FaiI	YATR	2 cut(s)	327, 634
FalI	AAGNNNNNCTT	2 cut(s)	568, 600
FatI	CATG	2 cut(s)	325, 632
Fnu4HI	GCNGC	4 cut(s)	237, 539, 542, 702
Fsp4HI	GCNGC	4 cut(s)	237, 539, 542, 702
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	4 cut(s)	237, 539, 542, 702
HaeIII	GGCC	1 cut(s)	85
Hin1II	CATG	2 cut(s)	329, 636
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	3 cut(s)	165, 209, 482
HpaI	GTTAAC	1 cut(s)	513
HphI	GGTGA	2 cut(s)	566, 623
Hpy166II	GTNNAC	3 cut(s)	97, 458, 513
Hpy188I	TCNGA	5 cut(s)	208, 319, 471, 487, 492
Hpy188III	TCNNGA	2 cut(s)	162, 278
Hpy8I	GTNNAC	3 cut(s)	97, 458, 513
HpyAV	CCTTC	4 cut(s)	96, 417, 439, 667
HpyCH4III	ACNGT	2 cut(s)	187, 264
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	3 cut(s)	325, 597, 701
HpyF3I	CTNAG	2 cut(s)	91, 318
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	329, 636
KspAI	GTTAAC	1 cut(s)	513
Kzo9I	GATC	3 cut(s)	119, 471, 487
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	3 cut(s)	18, 172, 387
Lsp1109I	GCAGC	2 cut(s)	223, 550
LweI	GCATC	2 cut(s)	604, 614
MabI	ACCWGGT	2 cut(s)	550, 607
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	3 cut(s)	121, 473, 489
MboI	GATC	3 cut(s)	119, 471, 487
MboII	GAAGA	7 cut(s)	51, 204, 284, 354, 427, 530, 641
MfeI	CAATTG	1 cut(s)	143
MflI	RGATCY	1 cut(s)	487
MluCI	AATT	8 cut(s)	42, 128, 143, 192, 297, 307, 376, 592
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	2 cut(s)	409, 547
MnlI	CCTC	8 cut(s)	49, 100, 250, 363, 436, 493, 514, 663
MseI	TTAA	8 cut(s)	65, 135, 300, 374, 437, 512, 527, 642
MslI	CAYNNNNRTG	1 cut(s)	53
MspR9I	CCNGG	6 cut(s)	80, 177, 412, 552, 609, 666
MunI	CAATTG	1 cut(s)	143
MvaI	CCWGG	6 cut(s)	80, 177, 412, 552, 609, 666
NdeII	GATC	3 cut(s)	119, 471, 487
NlaIII	CATG	2 cut(s)	329, 636
NlaIV	GGNNCC	4 cut(s)	84, 174, 383, 424
NspI	RCATGY	2 cut(s)	329, 636
OliI	CACNNNNGTG	1 cut(s)	53
PaeI	GCATGC	1 cut(s)	329
PasI	CCCWGGG	1 cut(s)	79
PciI	ACATGT	1 cut(s)	632
PciSI	GCTCTTC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	209, 482
PfoI	TCCNGGA	1 cut(s)	410
PkrI	GCNGC	4 cut(s)	238, 540, 543, 703
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PscI	ACATGT	1 cut(s)	632
Psp1406I	AACGTT	1 cut(s)	99
Psp6I	CCWGG	6 cut(s)	78, 175, 410, 550, 607, 664
PspGI	CCWGG	6 cut(s)	78, 175, 410, 550, 607, 664
PspN4I	GGNNCC	4 cut(s)	84, 174, 383, 424
PspPI	GGNCC	2 cut(s)	83, 605
PsuI	RGATCY	1 cut(s)	487
RseI	CAYNNNNRTG	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	8 cut(s)	65, 135, 300, 374, 437, 512, 527, 642
SatI	GCNGC	4 cut(s)	237, 539, 542, 702
Sau3AI	GATC	3 cut(s)	119, 471, 487
Sau96I	GGNCC	2 cut(s)	83, 605
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	6 cut(s)	80, 177, 412, 552, 609, 666
SexAI	ACCWGGT	2 cut(s)	550, 607
SfaNI	GCATC	2 cut(s)	604, 614
SinI	GGWCC	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
SphI	GCATGC	1 cut(s)	329
Sse9I	AATT	8 cut(s)	42, 128, 143, 192, 297, 307, 376, 592
SsiI	CCGC	3 cut(s)	536, 542, 603
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	6 cut(s)	78, 175, 410, 550, 607, 664
TaaI	ACNGT	2 cut(s)	187, 264
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	122
TasI	AATT	8 cut(s)	42, 128, 143, 192, 297, 307, 376, 592
TauI	GCSGC	1 cut(s)	544
TfiI	GAWTC	2 cut(s)	209, 482
Tru1I	TTAA	8 cut(s)	65, 135, 300, 374, 437, 512, 527, 642
Tru9I	TTAA	8 cut(s)	65, 135, 300, 374, 437, 512, 527, 642
TscAI	CASTG	2 cut(s)	55, 99
TseI	GCWGC	3 cut(s)	236, 538, 701
TspRI	CASTG	2 cut(s)	55, 99
VpaK11BI	GGWCC	1 cut(s)	605
XagI	CCTNNNNNAGG	1 cut(s)	642
XapI	RAATTY	2 cut(s)	128, 307
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	2 cut(s)	329, 636
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.